Wall clock time and date at job start Tue Mar 31 2020 14:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21336 * 120.00645 * 2 1 4 4 C 1.46547 * 119.99750 * 180.02562 * 2 1 3 5 5 C 1.37078 * 123.03517 * 0.02917 * 4 2 1 6 6 S 1.70587 * 110.49108 * 180.24526 * 5 4 2 7 7 C 1.75669 * 91.90967 * 359.65241 * 6 5 4 8 8 C 1.46765 * 124.99843 * 180.02562 * 7 6 5 9 9 O 1.21680 * 119.99605 * 172.36247 * 8 7 6 10 10 N 1.34770 * 120.00316 * 352.36648 * 8 7 6 11 11 C 1.46498 * 120.00261 * 1.76495 * 10 8 7 12 12 C 1.50695 * 109.47139 * 82.11055 * 11 10 8 13 13 H 1.08004 * 120.00238 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00134 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99921 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00248 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46794 * 59.99750 * 16 14 12 18 18 H 1.48498 * 109.47023 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47001 * 300.00347 * 16 14 12 20 20 C 1.46508 * 120.00033 * 181.76983 * 10 8 7 21 21 C 1.52992 * 109.47378 * 89.99706 * 20 10 8 22 22 C 1.52998 * 109.47159 * 180.02562 * 21 20 10 23 23 C 1.52999 * 109.47241 * 64.99899 * 22 21 20 24 24 C 1.53000 * 109.46987 * 185.00107 * 22 21 20 25 25 C 1.34730 * 109.99825 * 0.34773 * 7 6 5 26 26 H 1.08991 * 109.47440 * 239.99601 * 1 2 3 27 27 H 1.09006 * 109.46763 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47348 * 119.99160 * 1 2 3 29 29 H 1.07995 * 124.75336 * 359.97419 * 5 4 2 30 30 H 1.08992 * 109.47315 * 202.11493 * 11 10 8 31 31 H 1.09009 * 109.46782 * 322.11382 * 11 10 8 32 32 H 0.96998 * 120.00061 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.46806 * 209.99874 * 20 10 8 34 34 H 1.08999 * 109.46909 * 329.98996 * 20 10 8 35 35 H 1.08998 * 109.47289 * 299.99872 * 21 20 10 36 36 H 1.09006 * 109.47476 * 59.99435 * 21 20 10 37 37 H 1.09004 * 109.47070 * 304.99603 * 22 21 20 38 38 H 1.08999 * 109.47041 * 299.99962 * 23 22 21 39 39 H 1.08997 * 109.46900 * 60.00403 * 23 22 21 40 40 H 1.09000 * 109.47018 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.47507 * 59.99836 * 24 22 21 42 42 H 1.08996 * 109.47000 * 180.02562 * 24 22 21 43 43 H 1.09007 * 109.47300 * 299.99714 * 24 22 21 44 44 H 1.07998 * 123.16300 * 179.77698 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2396 -1.2692 -0.0006 5 6 1.6180 -2.4909 -0.0017 6 16 2.7714 -3.7477 0.0048 7 6 4.1045 -2.6038 -0.0016 8 6 5.5263 -2.9681 -0.0005 9 8 6.3747 -2.1080 -0.1453 10 7 5.8921 -4.2551 0.1608 11 6 4.8699 -5.2957 0.2963 12 6 4.3743 -5.6940 -1.0700 13 1 4.7805 -5.2197 -1.9512 14 6 3.4024 -6.6639 -1.1952 15 7 2.9074 -7.2411 -0.1221 16 14 2.7885 -7.1581 -2.8888 17 1 3.9223 -7.6804 -3.6932 18 1 1.7514 -8.2119 -2.7514 19 1 2.2036 -5.9742 -3.5682 20 6 7.3121 -4.6136 0.2007 21 6 7.8118 -4.5574 1.6456 22 6 9.2949 -4.9312 1.6872 23 6 10.1082 -3.8751 0.9362 24 6 9.7637 -4.9966 3.1421 25 6 3.6298 -1.3430 -0.0006 26 1 -0.3634 -0.5138 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8901 29 1 0.5480 -2.6372 -0.0019 30 1 5.2998 -6.1647 0.7944 31 1 4.0378 -4.9129 0.8872 32 1 2.2239 -7.9237 -0.2101 33 1 7.4431 -5.6226 -0.1902 34 1 7.8813 -3.9113 -0.4083 35 1 7.6807 -3.5484 2.0365 36 1 7.2425 -5.2597 2.2546 37 1 9.4379 -5.9033 1.2153 38 1 9.7742 -3.8285 -0.1003 39 1 9.9652 -2.9030 1.4082 40 1 11.1647 -4.1416 0.9655 41 1 9.1842 -5.7490 3.6772 42 1 10.8203 -5.2624 3.1717 43 1 9.6206 -4.0245 3.6141 44 1 4.2677 -0.4715 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106771772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:57 Heat of formation + Delta-G solvation = -62.736733 kcal Electronic energy + Delta-G solvation = -25365.587722 eV Core-core repulsion = 21795.099779 eV Total energy + Delta-G solvation = -3570.487943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.46277 -39.01305 -36.77631 -36.01117 -34.94596 -32.89827 -31.03115 -29.73986 -28.08263 -27.27925 -27.03375 -24.86821 -23.58466 -23.36840 -21.13253 -19.79267 -18.71905 -18.27719 -17.29204 -16.79041 -15.89963 -15.51444 -15.36311 -14.99900 -14.77024 -14.63597 -14.34572 -14.06666 -13.72565 -13.45799 -13.12657 -12.82783 -12.55063 -12.46216 -12.27227 -12.19248 -12.11133 -12.09091 -11.84114 -11.70938 -11.55080 -11.23143 -11.08340 -10.94245 -10.79291 -10.56806 -10.40132 -10.16118 -10.04137 -9.90733 -9.30212 -9.12358 -8.90067 -8.35774 -7.93646 -7.72338 -6.51065 -4.54373 1.03985 1.88460 2.32205 2.74577 3.08592 3.13530 3.17325 3.36728 3.74773 3.93748 4.10504 4.52562 4.82843 5.01417 5.08522 5.10534 5.23237 5.30209 5.44218 5.49044 5.64671 5.69017 5.70351 5.78482 5.85481 5.91305 5.93872 5.97173 6.07815 6.10333 6.21346 6.26841 6.33244 6.34924 6.40609 6.56433 6.63000 6.71301 6.78608 6.83306 7.30670 7.46145 7.62009 7.88561 8.10029 8.47812 8.86748 9.06398 10.52201 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008897 B = 0.005305 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.243021 B = 5276.560633 C = 7751.641067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.413 3.587 3 O -0.477 6.477 4 C -0.224 4.224 5 C -0.294 4.294 6 S 0.450 5.550 7 C -0.302 4.302 8 C 0.590 3.410 9 O -0.561 6.561 10 N -0.597 5.597 11 C 0.227 3.773 12 C -0.540 4.540 13 H 0.071 0.929 14 C 0.076 3.924 15 N -0.874 5.874 16 Si 0.892 3.108 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.121 3.879 21 C -0.129 4.129 22 C -0.093 4.093 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.034 4.034 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.273 0.727 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 1.568 3.361 3.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.291 3.709 3 O -0.355 6.355 4 C -0.239 4.239 5 C -0.434 4.434 6 S 0.728 5.272 7 C -0.423 4.423 8 C 0.378 3.622 9 O -0.442 6.442 10 N -0.327 5.327 11 C 0.104 3.896 12 C -0.582 4.582 13 H 0.089 0.911 14 C -0.131 4.131 15 N -0.509 5.509 16 Si 0.718 3.282 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.002 4.002 21 C -0.168 4.168 22 C -0.112 4.112 23 C -0.205 4.205 24 C -0.202 4.202 25 C -0.065 4.065 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.176 0.824 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.941 0.831 3.390 3.615 hybrid contribution -0.625 1.020 -0.942 1.523 sum 0.316 1.851 2.448 3.085 Atomic orbital electron populations 1.22184 0.94559 1.04254 1.04254 1.21990 0.91058 0.87412 0.70447 1.90511 1.72284 1.34485 1.38266 1.19313 0.93707 0.94372 1.16519 1.27817 1.08135 1.02669 1.04733 1.86177 0.88237 0.97879 1.54938 1.24296 0.98880 0.98781 1.20310 1.17025 0.86355 0.82484 0.76296 1.90713 1.51783 1.49324 1.52415 1.48023 1.07540 1.06904 1.70216 1.19653 0.85528 0.86670 0.97700 1.21553 1.22036 1.21836 0.92766 0.91086 1.24943 0.95671 0.94963 0.97507 1.69896 1.27324 1.25283 1.28438 0.86605 0.79023 0.78893 0.83715 1.19622 1.20642 1.19408 1.21403 0.81157 1.01281 0.96313 1.22020 0.94868 1.02077 0.97843 1.21044 0.94844 0.99313 0.96023 1.21884 0.98966 0.98898 1.00784 1.21824 1.00516 1.01680 0.96218 1.20125 0.93551 0.96722 0.96057 0.89238 0.90331 0.89230 0.82392 0.92586 0.94473 0.91704 0.90428 0.90377 0.91822 0.91777 0.91171 0.92242 0.92694 0.93258 0.92766 0.93028 0.92867 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 9.32 36.00 0.34 -1.88 16 2 C 0.41 6.74 7.23 -30.96 -0.22 6.52 16 3 O -0.48 -9.30 17.42 5.51 0.10 -9.20 16 4 C -0.22 -3.96 5.81 -106.61 -0.62 -4.58 16 5 C -0.29 -4.76 10.38 30.31 0.31 -4.44 16 6 S 0.45 8.49 15.69 -107.50 -1.69 6.81 16 7 C -0.30 -6.23 6.16 -37.38 -0.23 -6.46 16 8 C 0.59 12.89 7.56 -12.82 -0.10 12.79 16 9 O -0.56 -13.27 16.37 5.21 0.09 -13.18 16 10 N -0.60 -12.12 2.48 -176.58 -0.44 -12.56 16 11 C 0.23 4.83 4.74 -5.20 -0.02 4.80 16 12 C -0.54 -12.26 6.90 -34.44 -0.24 -12.49 16 13 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 14 C 0.08 1.72 4.98 -17.82 -0.09 1.64 16 15 N -0.87 -20.33 13.29 55.43 0.74 -19.59 16 16 Si 0.89 18.23 29.54 -169.99 -5.02 13.21 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 C 0.12 2.12 5.14 -4.04 -0.02 2.10 16 21 C -0.13 -1.96 5.01 -26.74 -0.13 -2.10 16 22 C -0.09 -1.16 2.92 -90.62 -0.26 -1.43 16 23 C -0.15 -1.82 8.95 37.16 0.33 -1.48 16 24 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 25 C -0.03 -0.67 9.47 -40.46 -0.38 -1.06 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.16 2.02 7.65 -52.49 -0.40 1.62 16 30 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 31 H 0.04 0.82 4.50 -22.05 -0.10 0.72 16 32 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 33 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.08 1.40 5.82 -51.93 -0.30 1.10 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.14 2.96 7.96 -52.49 -0.42 2.54 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -26.82 374.11 -8.18 -35.00 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.59 Total: 3.21 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.00 Total: -9.33 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.30 Total: -32.15 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.18 Total: -22.38 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -1.69 Total: 6.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.82 -8.18 -35.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106771772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.737 kcal (2) G-P(sol) polarization free energy of solvation -26.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds