Wall clock time and date at job start Tue Mar 31 2020 14:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21336 * 120.00645 * 2 1 4 4 C 1.46547 * 119.99750 * 180.02562 * 2 1 3 5 5 C 1.37078 * 123.03517 * 0.02917 * 4 2 1 6 6 S 1.70587 * 110.49108 * 180.24526 * 5 4 2 7 7 C 1.75669 * 91.90967 * 359.65241 * 6 5 4 8 8 C 1.46765 * 124.99843 * 180.02562 * 7 6 5 9 9 O 1.21680 * 119.99605 * 172.36247 * 8 7 6 10 10 N 1.34770 * 120.00316 * 352.36648 * 8 7 6 11 11 C 1.46498 * 120.00261 * 1.76495 * 10 8 7 12 12 C 1.50695 * 109.47139 * 82.11055 * 11 10 8 13 13 H 1.08004 * 120.00238 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00134 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99921 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00248 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46794 * 59.99750 * 16 14 12 18 18 H 1.48498 * 109.47023 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47001 * 300.00347 * 16 14 12 20 20 C 1.46508 * 120.00033 * 181.76983 * 10 8 7 21 21 C 1.52992 * 109.47378 * 89.99706 * 20 10 8 22 22 C 1.52998 * 109.47159 * 180.02562 * 21 20 10 23 23 C 1.52999 * 109.47241 * 64.99899 * 22 21 20 24 24 C 1.53000 * 109.46987 * 185.00107 * 22 21 20 25 25 C 1.34730 * 109.99825 * 0.34773 * 7 6 5 26 26 H 1.08991 * 109.47440 * 239.99601 * 1 2 3 27 27 H 1.09006 * 109.46763 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47348 * 119.99160 * 1 2 3 29 29 H 1.07995 * 124.75336 * 359.97419 * 5 4 2 30 30 H 1.08992 * 109.47315 * 202.11493 * 11 10 8 31 31 H 1.09009 * 109.46782 * 322.11382 * 11 10 8 32 32 H 0.96998 * 120.00061 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.46806 * 209.99874 * 20 10 8 34 34 H 1.08999 * 109.46909 * 329.98996 * 20 10 8 35 35 H 1.08998 * 109.47289 * 299.99872 * 21 20 10 36 36 H 1.09006 * 109.47476 * 59.99435 * 21 20 10 37 37 H 1.09004 * 109.47070 * 304.99603 * 22 21 20 38 38 H 1.08999 * 109.47041 * 299.99962 * 23 22 21 39 39 H 1.08997 * 109.46900 * 60.00403 * 23 22 21 40 40 H 1.09000 * 109.47018 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.47507 * 59.99836 * 24 22 21 42 42 H 1.08996 * 109.47000 * 180.02562 * 24 22 21 43 43 H 1.09007 * 109.47300 * 299.99714 * 24 22 21 44 44 H 1.07998 * 123.16300 * 179.77698 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2396 -1.2692 -0.0006 5 6 1.6180 -2.4909 -0.0017 6 16 2.7714 -3.7477 0.0048 7 6 4.1045 -2.6038 -0.0016 8 6 5.5263 -2.9681 -0.0005 9 8 6.3747 -2.1080 -0.1453 10 7 5.8921 -4.2551 0.1608 11 6 4.8699 -5.2957 0.2963 12 6 4.3743 -5.6940 -1.0700 13 1 4.7805 -5.2197 -1.9512 14 6 3.4024 -6.6639 -1.1952 15 7 2.9074 -7.2411 -0.1221 16 14 2.7885 -7.1581 -2.8888 17 1 3.9223 -7.6804 -3.6932 18 1 1.7514 -8.2119 -2.7514 19 1 2.2036 -5.9742 -3.5682 20 6 7.3121 -4.6136 0.2007 21 6 7.8118 -4.5574 1.6456 22 6 9.2949 -4.9312 1.6872 23 6 10.1082 -3.8751 0.9362 24 6 9.7637 -4.9966 3.1421 25 6 3.6298 -1.3430 -0.0006 26 1 -0.3634 -0.5138 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8901 29 1 0.5480 -2.6372 -0.0019 30 1 5.2998 -6.1647 0.7944 31 1 4.0378 -4.9129 0.8872 32 1 2.2239 -7.9237 -0.2101 33 1 7.4431 -5.6226 -0.1902 34 1 7.8813 -3.9113 -0.4083 35 1 7.6807 -3.5484 2.0365 36 1 7.2425 -5.2597 2.2546 37 1 9.4379 -5.9033 1.2153 38 1 9.7742 -3.8285 -0.1003 39 1 9.9652 -2.9030 1.4082 40 1 11.1647 -4.1416 0.9655 41 1 9.1842 -5.7490 3.6772 42 1 10.8203 -5.2624 3.1717 43 1 9.6206 -4.0245 3.6141 44 1 4.2677 -0.4715 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106771772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:56 Heat of formation + Delta-G solvation = -75.398412 kcal Electronic energy + Delta-G solvation = -25366.136773 eV Core-core repulsion = 21795.099779 eV Total energy + Delta-G solvation = -3571.036994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03629 -40.45784 -38.13607 -37.40404 -36.55141 -34.58677 -32.35310 -31.02964 -29.46141 -28.85634 -28.01719 -26.29971 -25.10609 -24.90663 -22.53549 -20.90175 -20.26843 -19.71821 -18.89548 -18.49526 -17.43841 -16.99280 -16.80136 -16.36469 -16.24944 -15.96544 -15.74901 -15.44435 -15.04094 -14.67723 -14.47163 -14.42773 -14.23785 -13.78702 -13.57034 -13.53810 -13.35425 -13.12576 -13.05421 -12.95622 -12.85593 -12.77117 -12.60271 -12.27603 -12.09337 -11.98295 -11.65454 -11.55090 -11.44412 -11.35668 -11.00058 -10.67420 -10.47844 -9.92203 -9.49846 -9.29294 -8.24707 -6.33271 -0.39516 0.42439 0.78107 1.26840 1.46254 1.49930 1.54550 1.90757 2.17121 2.34050 2.43404 3.06998 3.31196 3.72107 3.93603 3.96311 4.06204 4.11142 4.28779 4.33127 4.44025 4.52815 4.65794 4.66611 4.69146 4.70313 4.78189 4.79827 4.84067 4.93879 5.01343 5.04307 5.09401 5.11960 5.12794 5.26287 5.30828 5.37180 5.45941 5.50244 5.62010 5.76317 5.88493 6.40695 6.62251 6.70298 7.16579 7.31166 8.78629 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008897 B = 0.005305 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.243021 B = 5276.560633 C = 7751.641067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.412 3.588 3 O -0.518 6.518 4 C -0.237 4.237 5 C -0.254 4.254 6 S 0.433 5.567 7 C -0.325 4.325 8 C 0.580 3.420 9 O -0.591 6.591 10 N -0.596 5.596 11 C 0.235 3.765 12 C -0.548 4.548 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.890 5.890 16 Si 0.932 3.068 17 H -0.278 1.278 18 H -0.274 1.274 19 H -0.267 1.267 20 C 0.117 3.883 21 C -0.119 4.119 22 C -0.090 4.090 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.042 4.042 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.205 0.795 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.276 0.724 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 0.867 3.507 3.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.293 3.707 3 O -0.399 6.399 4 C -0.250 4.250 5 C -0.394 4.394 6 S 0.709 5.291 7 C -0.445 4.445 8 C 0.370 3.630 9 O -0.476 6.476 10 N -0.324 5.324 11 C 0.112 3.888 12 C -0.590 4.590 13 H 0.071 0.929 14 C -0.150 4.150 15 N -0.527 5.527 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.198 1.198 19 H -0.192 1.192 20 C -0.005 4.005 21 C -0.157 4.157 22 C -0.109 4.109 23 C -0.204 4.204 24 C -0.199 4.199 25 C -0.075 4.075 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.222 0.778 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.920 0.095 3.539 3.658 hybrid contribution -0.075 1.306 -0.976 1.632 sum -0.995 1.401 2.564 3.086 Atomic orbital electron populations 1.22211 0.89761 1.05829 1.06517 1.22663 0.93452 0.85881 0.68716 1.90509 1.73649 1.35511 1.40238 1.19559 0.92758 0.96112 1.16599 1.28076 1.09773 1.00506 1.01026 1.86096 0.88375 0.98482 1.56152 1.24281 0.98834 0.99549 1.21838 1.17331 0.86941 0.82649 0.76081 1.90676 1.52738 1.50053 1.54094 1.48119 1.08569 1.06365 1.69377 1.19523 0.85721 0.86365 0.97185 1.21461 1.22630 1.22370 0.92530 0.92874 1.25299 0.95539 0.94734 0.99476 1.69934 1.27702 1.25622 1.29403 0.85981 0.78493 0.78721 0.81070 1.20355 1.19843 1.19224 1.21582 0.79791 1.01233 0.97891 1.21918 0.97017 1.00925 0.95869 1.21046 0.92647 0.99703 0.97472 1.21866 1.00289 0.98382 0.99816 1.21795 1.01697 1.01644 0.94762 1.20236 0.95033 0.95941 0.96246 0.86573 0.89392 0.86823 0.77772 0.93426 0.94268 0.91406 0.89709 0.91248 0.93753 0.91827 0.90143 0.93467 0.93740 0.91021 0.92426 0.91152 0.93298 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 9.32 71.23 0.66 -2.76 16 2 C 0.41 12.64 7.23 27.85 0.20 12.84 16 3 O -0.52 -20.03 17.42 -3.20 -0.06 -20.09 16 4 C -0.24 -8.01 5.81 -21.15 -0.12 -8.14 16 5 C -0.25 -7.46 10.38 67.55 0.70 -6.75 16 6 S 0.43 15.96 15.69 -56.49 -0.89 15.08 16 7 C -0.32 -13.71 6.16 23.70 0.15 -13.57 16 8 C 0.58 26.50 7.56 86.47 0.65 27.15 16 9 O -0.59 -29.54 16.37 -4.29 -0.07 -29.61 16 10 N -0.60 -25.06 2.48 -830.80 -2.06 -27.12 16 11 C 0.23 10.15 4.74 85.63 0.41 10.55 16 12 C -0.55 -25.08 6.90 25.60 0.18 -24.90 16 13 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 14 C 0.05 2.45 4.98 84.65 0.42 2.87 16 15 N -0.89 -40.62 13.29 21.45 0.28 -40.33 16 16 Si 0.93 36.42 29.54 68.60 2.03 38.44 16 17 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 20 C 0.12 4.24 5.14 86.38 0.44 4.68 16 21 C -0.12 -3.69 5.01 30.59 0.15 -3.54 16 22 C -0.09 -2.19 2.92 -10.79 -0.03 -2.22 16 23 C -0.15 -3.56 8.95 71.98 0.64 -2.92 16 24 C -0.14 -2.93 9.19 71.98 0.66 -2.27 16 25 C -0.04 -1.73 9.47 21.70 0.21 -1.53 16 26 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.51 8.12 -2.38 -0.02 1.49 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.21 4.05 7.65 -2.91 -0.02 4.02 16 30 H 0.05 2.12 8.01 -2.39 -0.02 2.10 16 31 H 0.04 1.74 4.50 -21.38 -0.10 1.65 16 32 H 0.28 11.98 8.31 -92.71 -0.77 11.21 16 33 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 34 H 0.07 2.62 5.82 -2.39 -0.01 2.61 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.25 6.56 -2.39 -0.02 1.23 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.12 5.46 7.96 -2.91 -0.02 5.44 16 Total: -1.00 -59.70 374.11 5.47 -54.23 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.90 Total: 19.89 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.33 Total: -10.49 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -1.78 Total: -67.45 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -0.13 Total: -49.70 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 15.96 SS G_CDS: -0.89 Total: 15.08 kcal Total: -59.70 5.47 -54.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106771772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.168 kcal (2) G-P(sol) polarization free energy of solvation -59.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds