Wall clock time and date at job start Tue Mar 31 2020 13:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.53007 * 109.47146 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47187 * 64.99595 * 12 11 10 14 14 C 1.34768 * 119.99624 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00423 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99693 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47273 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00452 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00602 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00235 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99567 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47506 * 89.99932 * 22 20 18 24 24 H 1.48500 * 109.46964 * 209.99919 * 22 20 18 25 25 H 1.48500 * 109.47125 * 329.99701 * 22 20 18 26 26 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 27 27 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 28 28 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 30 30 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 31 31 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 32 32 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 33 33 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 34 34 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 36 36 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 37 37 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 38 38 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 39 39 H 1.08996 * 109.46972 * 184.99920 * 12 11 10 40 40 H 1.09003 * 109.46445 * 304.99769 * 12 11 10 41 41 H 0.97001 * 119.99769 * 0.02562 * 13 12 11 42 42 H 1.09005 * 109.47301 * 299.99700 * 16 14 13 43 43 H 1.08997 * 109.47766 * 60.00278 * 16 14 13 44 44 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2458 -3.8415 -1.6450 13 7 5.0304 -2.7821 -2.2841 14 6 5.3835 -2.8936 -3.5799 15 8 5.0515 -3.8707 -4.2171 16 6 6.1911 -1.8042 -4.2372 17 16 6.5022 -2.2429 -5.9654 18 6 7.4350 -0.8375 -6.4748 19 1 7.6446 -0.0448 -5.7718 20 6 7.9004 -0.7491 -7.7794 21 7 8.5968 0.3011 -8.1600 22 14 7.5373 -2.1198 -8.9954 23 1 6.2591 -1.8348 -9.6955 24 1 8.6377 -2.2043 -9.9891 25 1 7.4267 -3.4100 -8.2685 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.0783 0.6395 2.5847 34 1 1.8985 -0.5195 4.5950 35 1 3.3136 -2.5214 4.3748 36 1 3.9149 -3.3662 2.1426 37 1 4.9303 -3.2694 0.3156 38 1 3.4767 -4.2968 0.3154 39 1 4.7991 -4.7795 -1.6877 40 1 3.2960 -3.9557 -2.1675 41 1 5.2962 -2.0008 -1.7744 42 1 5.6378 -0.8659 -4.1949 43 1 7.1407 -1.6900 -3.7144 44 1 8.9218 0.3631 -9.0718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110507855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:37 Heat of formation + Delta-G solvation = -67.857215 kcal Electronic energy + Delta-G solvation = -24083.777281 eV Core-core repulsion = 20513.067297 eV Total energy + Delta-G solvation = -3570.709983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72546 -39.29234 -37.99615 -35.60735 -34.73590 -32.43022 -31.08700 -30.41129 -29.63747 -28.23857 -27.32935 -25.61017 -24.31064 -23.12063 -22.00245 -20.57221 -20.24821 -18.50387 -17.90507 -16.77090 -16.70109 -16.18212 -15.87232 -15.47845 -15.26505 -14.94333 -14.79141 -14.37429 -14.14140 -13.91549 -13.69922 -13.53000 -13.32188 -13.04788 -12.79215 -12.68990 -12.42170 -12.32422 -12.05486 -12.00284 -11.77075 -11.37098 -11.31279 -11.25349 -11.00120 -10.85882 -10.77540 -10.59474 -9.85199 -9.54554 -9.15266 -9.03997 -8.97690 -8.49315 -8.42977 -6.90905 -6.28058 -3.99709 1.00473 1.13786 2.74541 2.81856 2.98010 3.30636 3.34791 3.44221 3.51152 3.66270 4.32243 4.33908 4.35933 4.54925 4.66651 4.70754 4.76549 4.79034 4.87269 4.95223 5.00896 5.08254 5.10963 5.21958 5.24849 5.29739 5.42348 5.48681 5.57953 5.63201 5.65686 5.74808 5.78430 5.84407 5.93019 6.03145 6.04810 6.07690 6.20726 6.30919 6.44604 6.49259 7.09286 7.58621 7.95080 8.42730 8.47475 9.18121 10.81205 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.002397 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.695041 B =11677.530127 C =12408.969644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.086 4.086 8 C -0.207 4.207 9 C 0.132 3.868 10 O -0.307 6.307 11 C 0.048 3.952 12 C 0.125 3.875 13 N -0.734 5.734 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.402 0.598 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.263 -2.914 25.875 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.104 4.104 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.105 4.105 8 C -0.226 4.226 9 C 0.086 3.914 10 O -0.221 6.221 11 C -0.028 4.028 12 C 0.001 3.999 13 N -0.389 5.389 14 C 0.318 3.682 15 O -0.395 6.395 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.236 0.764 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.772 -4.392 24.466 28.915 hybrid contribution 0.671 0.953 0.617 1.319 sum -14.101 -3.439 25.082 28.979 Atomic orbital electron populations 1.21844 0.94462 1.01841 1.01757 1.20002 0.95678 0.95884 0.95717 1.21850 1.01376 0.95000 1.01772 1.19275 1.00137 0.95255 0.95730 1.20845 0.98611 0.99212 0.91068 1.21035 1.00738 0.97226 0.98564 1.20915 0.96930 0.95959 0.96649 1.21246 1.05863 1.02945 0.92567 1.18824 0.95082 0.93565 0.83885 1.86129 1.66195 1.43945 1.25787 1.23135 0.94494 0.87241 0.97917 1.21326 0.97139 0.91541 0.89882 1.45898 1.57048 1.24013 1.11940 1.20274 0.79332 0.87617 0.81005 1.90701 1.54026 1.31879 1.62932 1.23271 1.02216 0.99992 1.01950 1.84772 1.71268 1.31721 1.03805 1.22318 1.38558 1.05348 1.00610 0.89385 1.24718 0.93471 0.95748 0.97414 1.69939 1.34846 1.28139 1.18805 0.86730 0.78887 0.84185 0.82019 1.19204 1.19962 1.15920 0.92760 0.92254 0.92704 0.89386 0.92187 0.92782 0.92488 0.85554 0.86063 0.85974 0.85513 0.91156 0.90382 0.89333 0.90358 0.76352 0.88434 0.88472 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.01 37.16 0.33 -0.80 16 2 C -0.05 -0.50 3.06 -91.77 -0.28 -0.78 16 3 C -0.14 -1.20 9.01 37.16 0.33 -0.87 16 4 C -0.10 -0.97 4.79 -104.48 -0.50 -1.47 16 5 C -0.08 -0.64 8.71 -39.61 -0.34 -0.99 16 6 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 7 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16 8 C -0.21 -1.72 9.04 -39.43 -0.36 -2.07 16 9 C 0.13 1.28 6.66 -39.21 -0.26 1.02 16 10 O -0.31 -3.08 8.85 -19.43 -0.17 -3.25 16 11 C 0.05 0.37 4.87 37.16 0.18 0.55 16 12 C 0.13 1.30 6.06 -4.04 -0.02 1.28 16 13 N -0.73 -9.32 5.50 -60.29 -0.33 -9.65 16 14 C 0.53 9.42 7.85 -10.99 -0.09 9.33 16 15 O -0.52 -11.16 15.86 5.56 0.09 -11.07 16 16 C -0.12 -2.41 6.16 36.01 0.22 -2.18 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 19 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 22 Si 0.86 21.87 27.74 -169.99 -4.72 17.16 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -5.99 6.74 56.52 0.38 -5.60 16 26 H 0.05 0.37 7.39 -51.93 -0.38 -0.01 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.96 6.99 -51.93 -0.36 0.59 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.39 7.39 -51.93 -0.38 0.01 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.13 0.81 7.10 -52.48 -0.37 0.44 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.13 0.82 6.30 -52.49 -0.33 0.49 16 37 H 0.07 0.47 7.66 -51.93 -0.40 0.07 16 38 H 0.08 0.47 7.67 -51.93 -0.40 0.07 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.40 4.27 8.47 -40.82 -0.35 3.93 16 42 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -34.34 378.82 -8.78 -43.12 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.78 Total: 1.16 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.36 Total: -11.66 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.44 Total: -35.56 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.08 Total: -14.32 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.34 -8.78 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110507855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.734 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds