Wall clock time and date at job start Tue Mar 31 2020 13:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.53007 * 109.47146 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47187 * 64.99595 * 12 11 10 14 14 C 1.34768 * 119.99624 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00423 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99693 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47273 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00452 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00602 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00235 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99567 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47506 * 89.99932 * 22 20 18 24 24 H 1.48500 * 109.46964 * 209.99919 * 22 20 18 25 25 H 1.48500 * 109.47125 * 329.99701 * 22 20 18 26 26 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 27 27 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 28 28 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 30 30 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 31 31 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 32 32 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 33 33 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 34 34 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 36 36 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 37 37 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 38 38 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 39 39 H 1.08996 * 109.46972 * 184.99920 * 12 11 10 40 40 H 1.09003 * 109.46445 * 304.99769 * 12 11 10 41 41 H 0.97001 * 119.99769 * 0.02562 * 13 12 11 42 42 H 1.09005 * 109.47301 * 299.99700 * 16 14 13 43 43 H 1.08997 * 109.47766 * 60.00278 * 16 14 13 44 44 H 0.96997 * 120.00009 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2458 -3.8415 -1.6450 13 7 5.0304 -2.7821 -2.2841 14 6 5.3835 -2.8936 -3.5799 15 8 5.0515 -3.8707 -4.2171 16 6 6.1911 -1.8042 -4.2372 17 16 6.5022 -2.2429 -5.9654 18 6 7.4350 -0.8375 -6.4748 19 1 7.6446 -0.0448 -5.7718 20 6 7.9004 -0.7491 -7.7794 21 7 8.5968 0.3011 -8.1600 22 14 7.5373 -2.1198 -8.9954 23 1 6.2591 -1.8348 -9.6955 24 1 8.6377 -2.2043 -9.9891 25 1 7.4267 -3.4100 -8.2685 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.0783 0.6395 2.5847 34 1 1.8985 -0.5195 4.5950 35 1 3.3136 -2.5214 4.3748 36 1 3.9149 -3.3662 2.1426 37 1 4.9303 -3.2694 0.3156 38 1 3.4767 -4.2968 0.3154 39 1 4.7991 -4.7795 -1.6877 40 1 3.2960 -3.9557 -2.1675 41 1 5.2962 -2.0008 -1.7744 42 1 5.6378 -0.8659 -4.1949 43 1 7.1407 -1.6900 -3.7144 44 1 8.9218 0.3631 -9.0718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110507855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:36 Heat of formation + Delta-G solvation = -89.350318 kcal Electronic energy + Delta-G solvation = -24084.709292 eV Core-core repulsion = 20513.067297 eV Total energy + Delta-G solvation = -3571.641994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38135 -40.59609 -38.71233 -36.23668 -35.88470 -34.67687 -32.20058 -31.00549 -30.54424 -29.27154 -27.98611 -27.85218 -25.02166 -23.81927 -22.67814 -21.89310 -20.90393 -19.91183 -19.13278 -17.99384 -17.69778 -17.14859 -17.05541 -16.59821 -16.48945 -16.41645 -15.63025 -15.42873 -15.09289 -14.92373 -14.79601 -14.68167 -14.56416 -14.24065 -13.95113 -13.43767 -13.35639 -13.29806 -13.05099 -13.00796 -12.92401 -12.74888 -12.60137 -12.43928 -12.05239 -11.93961 -11.85826 -11.51874 -11.40010 -11.17583 -11.03409 -10.54935 -10.19304 -9.73638 -9.04935 -9.00321 -8.51972 -6.22958 0.42100 0.53734 0.98037 1.31437 1.46405 1.53850 1.55793 2.13828 2.23334 2.27312 2.71074 2.85418 2.86166 3.65122 3.72420 3.85546 3.93841 4.05099 4.16333 4.19498 4.21253 4.30923 4.33224 4.36193 4.45725 4.53084 4.54811 4.60327 4.77336 4.79501 4.84107 4.92607 4.98161 5.12916 5.21831 5.31064 5.34033 5.37877 5.48788 5.62571 5.67355 5.70283 5.91200 6.10935 6.40409 6.47395 6.93015 7.14771 8.60530 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.002397 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.695041 B =11677.530127 C =12408.969644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.121 4.121 5 C -0.086 4.086 6 C -0.161 4.161 7 C -0.092 4.092 8 C -0.213 4.213 9 C 0.111 3.889 10 O -0.326 6.326 11 C 0.053 3.947 12 C 0.124 3.876 13 N -0.711 5.711 14 C 0.536 3.464 15 O -0.562 6.562 16 C -0.112 4.112 17 S -0.173 6.173 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.236 1.236 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.415 0.585 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.973 -3.745 28.090 32.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.121 4.121 5 C -0.104 4.104 6 C -0.179 4.179 7 C -0.110 4.110 8 C -0.231 4.231 9 C 0.066 3.934 10 O -0.241 6.241 11 C -0.022 4.022 12 C 0.000 4.000 13 N -0.365 5.365 14 C 0.322 3.678 15 O -0.440 6.440 16 C -0.263 4.263 17 S 0.053 5.947 18 C -0.677 4.677 19 H 0.079 0.921 20 C -0.161 4.161 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.160 1.160 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.484 -5.200 26.735 31.330 hybrid contribution 0.845 1.272 0.134 1.533 sum -14.639 -3.929 26.868 30.849 Atomic orbital electron populations 1.21813 0.93713 1.01561 1.02460 1.19941 0.96311 0.95941 0.95011 1.21826 1.00656 0.94815 1.02413 1.19427 1.00823 0.95719 0.96181 1.21057 0.98767 0.99740 0.90794 1.21362 1.00169 0.97048 0.99310 1.21261 0.96532 0.95979 0.97204 1.21491 1.05873 1.03369 0.92393 1.19031 0.95991 0.94220 0.84126 1.86091 1.66792 1.44713 1.26454 1.23164 0.95430 0.87595 0.96022 1.21501 0.96141 0.91127 0.91209 1.45719 1.55661 1.24896 1.10218 1.19902 0.79143 0.86455 0.82310 1.90689 1.55896 1.33200 1.64226 1.23266 1.03827 1.01252 0.97960 1.84668 1.70672 1.30389 1.08926 1.22461 1.38845 1.05908 1.00469 0.92056 1.25584 0.93326 0.97964 0.99206 1.70018 1.35914 1.29885 1.19712 0.85854 0.79256 0.81223 0.79957 1.18729 1.18270 1.15961 0.91418 0.92159 0.93445 0.91718 0.92246 0.91416 0.93536 0.84228 0.83985 0.83766 0.83844 0.89455 0.88102 0.88343 0.91654 0.74874 0.87238 0.86780 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.01 71.98 0.65 -1.48 16 2 C -0.05 -0.97 3.06 -11.54 -0.04 -1.01 16 3 C -0.14 -2.29 9.01 71.98 0.65 -1.64 16 4 C -0.12 -2.16 4.79 -19.77 -0.09 -2.26 16 5 C -0.09 -1.23 8.71 22.25 0.19 -1.04 16 6 C -0.16 -1.99 10.04 22.28 0.22 -1.77 16 7 C -0.09 -1.13 10.04 22.25 0.22 -0.91 16 8 C -0.21 -3.03 9.04 22.37 0.20 -2.82 16 9 C 0.11 2.02 6.66 22.51 0.15 2.17 16 10 O -0.33 -6.17 8.85 -92.44 -0.82 -6.98 16 11 C 0.05 0.71 4.87 71.98 0.35 1.06 16 12 C 0.12 2.37 6.06 86.38 0.52 2.89 16 13 N -0.71 -16.97 5.50 -463.06 -2.55 -19.52 16 14 C 0.54 18.50 7.85 87.66 0.69 19.19 16 15 O -0.56 -23.84 15.86 -3.03 -0.05 -23.89 16 16 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 17 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 18 C -0.53 -31.09 10.04 67.95 0.68 -30.41 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 20 C 0.04 2.63 5.50 84.86 0.47 3.10 16 21 N -0.92 -56.25 13.97 21.65 0.30 -55.94 16 22 Si 0.92 45.26 27.74 68.60 1.90 47.16 16 23 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 26 H 0.07 0.84 7.39 -2.39 -0.02 0.82 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 1.45 6.99 -2.38 -0.02 1.43 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.90 7.39 -2.39 -0.02 0.88 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.14 1.51 7.10 -2.91 -0.02 1.49 16 34 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.14 1.43 6.30 -2.91 -0.02 1.41 16 37 H 0.09 0.90 7.66 -2.39 -0.02 0.88 16 38 H 0.10 0.93 7.67 -2.39 -0.02 0.92 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.41 8.02 8.47 -92.71 -0.79 7.23 16 42 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 44 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -74.87 378.82 3.23 -71.65 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.17 Total: 16.17 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 5.31 Total: -18.78 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -2.25 Total: -75.47 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.87 Total: -30.87 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -74.87 3.23 -71.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110507855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.704 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds