Wall clock time and date at job start Tue Mar 31 2020 14:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47075 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47154 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00150 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47439 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.40134 * 120.00068 * 185.53129 * 9 7 6 11 11 C 1.38648 * 120.10201 * 24.81560 * 10 9 7 12 12 C 1.38254 * 120.00935 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.20737 * 359.97261 * 12 11 10 14 14 C 1.38191 * 120.20073 * 0.02728 * 13 12 11 15 15 C 1.38782 * 119.99201 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.10682 * 180.02562 * 15 14 13 17 17 C 1.81399 * 103.00125 * 359.95629 * 16 15 14 18 18 C 1.50695 * 109.47411 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00238 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00203 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47214 * 89.99814 * 22 20 18 24 24 H 1.48496 * 109.47166 * 209.99956 * 22 20 18 25 25 H 1.48496 * 109.46623 * 329.99754 * 22 20 18 26 26 H 1.09006 * 109.47105 * 300.00653 * 1 2 3 27 27 H 1.08997 * 109.46694 * 60.00117 * 1 2 3 28 28 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47462 * 239.99390 * 2 1 3 30 30 H 1.09003 * 109.46697 * 119.99188 * 2 1 3 31 31 H 1.08998 * 109.47370 * 59.99868 * 3 2 1 32 32 H 1.09006 * 109.47099 * 299.99511 * 3 2 1 33 33 H 1.08998 * 109.47130 * 59.99720 * 4 3 2 34 34 H 1.09006 * 109.46758 * 299.99720 * 4 3 2 35 35 H 1.09003 * 109.47030 * 59.99406 * 6 5 4 36 36 H 1.09001 * 109.46783 * 300.00124 * 6 5 4 37 37 H 0.97000 * 119.99717 * 5.52573 * 9 7 6 38 38 H 1.08003 * 119.99520 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.89520 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.89265 * 179.74764 * 13 12 11 41 41 H 1.08006 * 120.00386 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.46737 * 300.00429 * 17 16 15 43 43 H 1.09002 * 109.46929 * 59.99775 * 17 16 15 44 44 H 0.96999 * 120.00173 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9026 0.0012 7 6 5.8595 4.3586 -0.0002 8 8 5.0010 5.2154 -0.0025 9 7 7.1610 4.7088 0.0000 10 6 7.5238 6.0574 0.1157 11 6 6.6649 6.9586 0.7259 12 6 7.0244 8.2888 0.8385 13 6 8.2403 8.7252 0.3445 14 6 9.1029 7.8344 -0.2654 15 6 8.7504 6.4973 -0.3829 16 16 9.8483 5.3587 -1.1593 17 6 11.2597 6.4015 -1.6189 18 6 12.3042 5.5594 -2.3050 19 1 12.1356 4.5025 -2.4505 20 6 13.4750 6.1380 -2.7470 21 7 14.3863 5.4032 -3.3462 22 14 13.7668 7.9658 -2.4947 23 1 14.4428 8.1838 -1.1907 24 1 14.6243 8.4859 -3.5898 25 1 12.4652 8.6806 -2.5032 26 1 -0.3633 0.5140 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8910 35 1 5.8745 2.4183 -0.8881 36 1 5.8729 2.4197 0.8919 37 1 7.8466 4.0272 -0.0799 38 1 5.7144 6.6216 1.1126 39 1 6.3538 8.9893 1.3138 40 1 8.5142 9.7663 0.4315 41 1 10.0518 8.1786 -0.6497 42 1 10.9251 7.1883 -2.2949 43 1 11.6869 6.8504 -0.7221 44 1 15.2102 5.8102 -3.6568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118226285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:23 Heat of formation + Delta-G solvation = -69.788451 kcal Electronic energy + Delta-G solvation = -23583.204775 eV Core-core repulsion = 20012.411047 eV Total energy + Delta-G solvation = -3570.793728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54020 -38.67677 -37.75327 -35.27903 -34.76335 -33.21015 -30.96762 -30.58579 -29.52257 -29.34462 -27.31362 -23.70656 -23.28978 -22.82885 -22.06051 -21.49686 -20.37235 -18.16462 -17.38330 -17.10643 -16.90195 -16.67295 -16.28091 -15.69879 -15.11768 -15.03445 -14.69919 -14.36248 -14.11073 -13.95218 -13.52911 -13.39276 -13.35112 -13.24799 -12.99644 -12.57240 -12.52424 -12.26674 -11.91367 -11.82643 -11.49492 -11.36463 -11.29451 -11.03025 -10.93653 -10.64232 -10.40733 -10.31349 -10.00835 -9.83150 -9.71609 -9.33321 -9.31897 -8.82247 -8.13379 -6.76187 -6.31140 -4.35554 1.36289 1.54997 2.15562 2.50409 2.59886 3.12957 3.19954 3.21494 3.33951 3.66491 3.96461 4.19801 4.44910 4.52155 4.64370 4.72899 4.81826 4.85609 4.95096 5.00134 5.03564 5.11967 5.20394 5.21645 5.40855 5.42835 5.44962 5.51137 5.66249 5.67196 5.72884 5.85295 5.92542 6.05113 6.30178 6.38673 6.41777 6.48951 6.56683 6.71853 6.75475 7.15595 7.24806 7.35522 8.01119 8.13860 8.68096 9.23515 10.80401 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.002364 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.015473 B =11839.063547 C =13295.125608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.059 3.941 5 O -0.364 6.364 6 C 0.046 3.954 7 C 0.514 3.486 8 O -0.502 6.502 9 N -0.660 5.660 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.118 4.118 15 C -0.104 4.104 16 S -0.132 6.132 17 C 0.034 3.966 18 C -0.522 4.522 19 H 0.085 0.915 20 C 0.084 3.916 21 N -0.886 5.886 22 Si 0.876 3.124 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.264 1.264 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.415 0.585 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.743 -5.896 9.225 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.282 6.282 6 C -0.034 4.034 7 C 0.301 3.699 8 O -0.376 6.376 9 N -0.306 5.306 10 C 0.054 3.946 11 C -0.137 4.137 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.143 4.143 15 C -0.219 4.219 16 S 0.114 5.886 17 C -0.114 4.114 18 C -0.561 4.561 19 H 0.103 0.897 20 C -0.122 4.122 21 N -0.523 5.523 22 Si 0.702 3.298 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.252 0.748 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.364 -6.454 8.874 24.017 hybrid contribution 1.162 1.722 0.166 2.084 sum -20.203 -4.732 9.040 22.633 Atomic orbital electron populations 1.21754 0.95350 1.01729 1.02124 1.21445 0.96337 0.95918 1.02257 1.21547 0.93099 0.97294 1.03748 1.22631 0.95499 0.83153 1.00447 1.87987 1.18221 1.26478 1.95501 1.22145 0.84174 0.93805 1.03254 1.20337 0.82084 0.91004 0.76521 1.90691 1.49261 1.51301 1.46323 1.43393 1.07866 1.07323 1.72016 1.17159 0.93798 0.83619 0.99978 1.21247 1.00287 0.92983 0.99227 1.20964 0.96664 0.95308 1.01148 1.21026 0.94310 0.99298 0.99184 1.21123 1.00602 0.91605 1.00936 1.21890 0.98233 0.98187 1.03615 1.85085 1.16627 1.17352 1.69521 1.21726 0.92930 0.97167 0.99561 1.20380 0.99825 0.96927 1.38935 0.89701 1.24821 0.95182 0.98175 0.93992 1.69848 1.08148 1.36180 1.38125 0.86833 0.78985 0.85320 0.78642 1.19683 1.20588 1.18914 0.92582 0.92536 0.92595 0.91753 0.91815 0.90958 0.90887 0.92952 0.93048 0.89634 0.89743 0.74779 0.83785 0.85959 0.86075 0.85282 0.93774 0.94260 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.12 -0.90 5.58 -26.73 -0.15 -1.04 16 4 C 0.06 0.48 5.94 37.16 0.22 0.70 16 5 O -0.36 -4.26 9.88 -55.14 -0.54 -4.80 16 6 C 0.05 0.46 6.42 36.00 0.23 0.69 16 7 C 0.51 7.12 7.71 -10.99 -0.08 7.04 16 8 O -0.50 -8.70 13.67 -14.37 -0.20 -8.90 16 9 N -0.66 -9.27 5.17 -9.71 -0.05 -9.32 16 10 C 0.15 2.55 6.44 -83.43 -0.54 2.02 16 11 C -0.12 -1.82 8.72 -39.42 -0.34 -2.16 16 12 C -0.12 -1.68 10.04 -39.55 -0.40 -2.08 16 13 C -0.12 -1.71 10.04 -39.57 -0.40 -2.11 16 14 C -0.12 -2.02 9.36 -39.40 -0.37 -2.39 16 15 C -0.10 -1.86 6.12 -38.90 -0.24 -2.10 16 16 S -0.13 -2.61 20.55 -107.50 -2.21 -4.82 16 17 C 0.03 0.78 3.16 36.00 0.11 0.89 16 18 C -0.52 -14.14 9.68 -34.44 -0.33 -14.48 16 19 H 0.09 2.50 7.96 -52.48 -0.42 2.08 16 20 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 21 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 22 Si 0.88 20.19 27.47 -169.99 -4.67 15.52 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.41 5.13 7.65 -40.82 -0.31 4.82 16 38 H 0.14 2.28 5.79 -52.48 -0.30 1.97 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.13 2.25 5.88 -52.48 -0.31 1.94 16 42 H 0.04 1.01 6.81 -51.92 -0.35 0.66 16 43 H 0.04 0.87 7.17 -51.92 -0.37 0.50 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -31.87 377.23 -10.11 -41.99 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.73 Total: 3.82 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.17 Total: -14.12 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.72 Total: -34.36 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.74 Total: -13.70 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.21 Total: -4.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.87 -10.11 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118226285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.801 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds