Wall clock time and date at job start Tue Mar 31 2020 14:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47075 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47154 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00150 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47439 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.40134 * 120.00068 * 185.53129 * 9 7 6 11 11 C 1.38648 * 120.10201 * 24.81560 * 10 9 7 12 12 C 1.38254 * 120.00935 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.20737 * 359.97261 * 12 11 10 14 14 C 1.38191 * 120.20073 * 0.02728 * 13 12 11 15 15 C 1.38782 * 119.99201 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.10682 * 180.02562 * 15 14 13 17 17 C 1.81399 * 103.00125 * 359.95629 * 16 15 14 18 18 C 1.50695 * 109.47411 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00238 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00203 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47214 * 89.99814 * 22 20 18 24 24 H 1.48496 * 109.47166 * 209.99956 * 22 20 18 25 25 H 1.48496 * 109.46623 * 329.99754 * 22 20 18 26 26 H 1.09006 * 109.47105 * 300.00653 * 1 2 3 27 27 H 1.08997 * 109.46694 * 60.00117 * 1 2 3 28 28 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47462 * 239.99390 * 2 1 3 30 30 H 1.09003 * 109.46697 * 119.99188 * 2 1 3 31 31 H 1.08998 * 109.47370 * 59.99868 * 3 2 1 32 32 H 1.09006 * 109.47099 * 299.99511 * 3 2 1 33 33 H 1.08998 * 109.47130 * 59.99720 * 4 3 2 34 34 H 1.09006 * 109.46758 * 299.99720 * 4 3 2 35 35 H 1.09003 * 109.47030 * 59.99406 * 6 5 4 36 36 H 1.09001 * 109.46783 * 300.00124 * 6 5 4 37 37 H 0.97000 * 119.99717 * 5.52573 * 9 7 6 38 38 H 1.08003 * 119.99520 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.89520 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.89265 * 179.74764 * 13 12 11 41 41 H 1.08006 * 120.00386 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.46737 * 300.00429 * 17 16 15 43 43 H 1.09002 * 109.46929 * 59.99775 * 17 16 15 44 44 H 0.96999 * 120.00173 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9026 0.0012 7 6 5.8595 4.3586 -0.0002 8 8 5.0010 5.2154 -0.0025 9 7 7.1610 4.7088 0.0000 10 6 7.5238 6.0574 0.1157 11 6 6.6649 6.9586 0.7259 12 6 7.0244 8.2888 0.8385 13 6 8.2403 8.7252 0.3445 14 6 9.1029 7.8344 -0.2654 15 6 8.7504 6.4973 -0.3829 16 16 9.8483 5.3587 -1.1593 17 6 11.2597 6.4015 -1.6189 18 6 12.3042 5.5594 -2.3050 19 1 12.1356 4.5025 -2.4505 20 6 13.4750 6.1380 -2.7470 21 7 14.3863 5.4032 -3.3462 22 14 13.7668 7.9658 -2.4947 23 1 14.4428 8.1838 -1.1907 24 1 14.6243 8.4859 -3.5898 25 1 12.4652 8.6806 -2.5032 26 1 -0.3633 0.5140 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8910 35 1 5.8745 2.4183 -0.8881 36 1 5.8729 2.4197 0.8919 37 1 7.8466 4.0272 -0.0799 38 1 5.7144 6.6216 1.1126 39 1 6.3538 8.9893 1.3138 40 1 8.5142 9.7663 0.4315 41 1 10.0518 8.1786 -0.6497 42 1 10.9251 7.1883 -2.2949 43 1 11.6869 6.8504 -0.7221 44 1 15.2102 5.8102 -3.6568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118226285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:22 Heat of formation + Delta-G solvation = -87.608340 kcal Electronic energy + Delta-G solvation = -23583.977503 eV Core-core repulsion = 20012.411047 eV Total energy + Delta-G solvation = -3571.566456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66830 -39.69073 -38.68722 -35.98506 -35.79821 -35.25193 -32.32614 -31.55317 -31.26601 -30.22536 -28.17941 -25.06223 -24.24535 -24.10203 -23.37931 -22.08249 -21.46380 -19.55745 -18.87208 -18.35832 -18.03069 -17.59525 -17.20197 -16.64204 -16.52097 -16.11807 -15.93168 -15.58749 -15.20770 -15.08722 -14.93995 -14.78509 -14.48392 -14.32874 -14.07007 -13.94933 -13.63458 -13.17474 -12.91468 -12.74544 -12.65688 -12.43675 -12.21449 -12.12140 -11.96760 -11.88467 -11.78004 -11.59349 -11.52751 -11.01904 -10.94232 -10.86172 -10.70393 -10.59795 -9.35569 -8.40960 -8.24096 -6.51681 0.15542 0.30624 0.65951 1.33236 1.34532 1.42833 1.44380 1.61062 1.73304 2.26439 2.75283 2.85658 2.92352 3.50866 3.85147 3.99189 4.05855 4.13498 4.17157 4.20365 4.22845 4.35630 4.42438 4.44047 4.47718 4.48449 4.53100 4.64619 4.68980 4.84844 4.91610 4.94922 5.02742 5.11013 5.23637 5.24460 5.27833 5.35271 5.40665 5.44890 5.53706 5.95811 6.00957 6.03821 6.30441 6.52001 6.93305 7.11642 8.74117 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.002364 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.015473 B =11839.063547 C =13295.125608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.119 4.119 4 C 0.055 3.945 5 O -0.396 6.396 6 C 0.050 3.950 7 C 0.512 3.488 8 O -0.541 6.541 9 N -0.657 5.657 10 C 0.149 3.851 11 C -0.127 4.127 12 C -0.106 4.106 13 C -0.114 4.114 14 C -0.131 4.131 15 C -0.125 4.125 16 S -0.137 6.137 17 C 0.035 3.965 18 C -0.532 4.532 19 H 0.044 0.956 20 C 0.026 3.974 21 N -0.934 5.934 22 Si 0.945 3.055 23 H -0.260 1.260 24 H -0.278 1.278 25 H -0.245 1.245 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.421 0.579 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.124 0.876 42 H 0.046 0.954 43 H 0.048 0.952 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.929 -4.705 10.534 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.156 4.156 4 C -0.021 4.021 5 O -0.315 6.315 6 C -0.030 4.030 7 C 0.301 3.699 8 O -0.417 6.417 9 N -0.303 5.303 10 C 0.048 3.952 11 C -0.149 4.149 12 C -0.127 4.127 13 C -0.134 4.134 14 C -0.156 4.156 15 C -0.240 4.240 16 S 0.108 5.892 17 C -0.113 4.113 18 C -0.571 4.571 19 H 0.063 0.937 20 C -0.175 4.175 21 N -0.572 5.572 22 Si 0.767 3.233 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.168 1.168 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.260 0.740 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.141 0.859 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.567 -5.284 10.198 25.322 hybrid contribution 1.395 1.294 -0.194 1.913 sum -21.172 -3.990 10.003 23.754 Atomic orbital electron populations 1.21773 0.95233 1.02243 1.01880 1.21426 0.96425 0.94698 1.02964 1.21555 0.93094 0.98307 1.02681 1.22829 0.95557 0.81851 1.01871 1.87946 1.19029 1.28692 1.95827 1.22251 0.83916 0.91026 1.05769 1.21087 0.81327 0.92487 0.75046 1.90663 1.50123 1.52777 1.48169 1.43452 1.08407 1.06780 1.71706 1.17350 0.93368 0.84850 0.99594 1.21409 1.00109 0.93829 0.99533 1.21388 0.96758 0.95096 0.99495 1.21354 0.93732 1.00434 0.97883 1.21272 1.01050 0.91699 1.01536 1.21832 0.98491 0.98287 1.05378 1.84915 1.16090 1.17515 1.70699 1.21489 0.93350 0.97005 0.99418 1.20565 1.01396 0.95782 1.39338 0.93731 1.25794 0.94743 1.03532 0.93444 1.69992 1.08967 1.38641 1.39635 0.85741 0.79733 0.78897 0.78954 1.18465 1.20280 1.16849 0.92743 0.92929 0.91686 0.91174 0.90915 0.91845 0.92176 0.91741 0.91276 0.87412 0.86588 0.74011 0.84001 0.82591 0.82838 0.85850 0.93566 0.93383 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.80 16 2 C -0.12 -1.19 5.93 30.60 0.18 -1.00 16 3 C -0.12 -1.70 5.58 30.60 0.17 -1.53 16 4 C 0.05 0.80 5.94 71.98 0.43 1.22 16 5 O -0.40 -8.83 9.88 -129.94 -1.28 -10.12 16 6 C 0.05 0.91 6.42 71.23 0.46 1.36 16 7 C 0.51 13.77 7.71 87.66 0.68 14.45 16 8 O -0.54 -18.62 13.67 15.95 0.22 -18.40 16 9 N -0.66 -18.00 5.17 -303.01 -1.57 -19.57 16 10 C 0.15 4.78 6.44 38.22 0.25 5.03 16 11 C -0.13 -3.79 8.72 22.37 0.20 -3.59 16 12 C -0.11 -2.66 10.04 22.29 0.22 -2.44 16 13 C -0.11 -2.95 10.04 22.27 0.22 -2.73 16 14 C -0.13 -4.25 9.36 22.39 0.21 -4.04 16 15 C -0.12 -4.36 6.12 22.71 0.14 -4.23 16 16 S -0.14 -5.43 20.55 -56.49 -1.16 -6.59 16 17 C 0.04 1.62 3.16 71.23 0.23 1.85 16 18 C -0.53 -29.59 9.68 25.60 0.25 -29.34 16 19 H 0.04 2.76 7.96 -2.91 -0.02 2.74 16 20 C 0.03 1.44 5.47 84.65 0.46 1.90 16 21 N -0.93 -55.82 13.96 21.45 0.30 -55.53 16 22 Si 0.94 41.21 27.47 68.60 1.88 43.09 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.25 -9.83 6.54 99.48 0.65 -9.18 16 26 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.42 10.16 7.65 -92.71 -0.71 9.45 16 38 H 0.14 4.34 5.79 -2.91 -0.02 4.32 16 39 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.12 4.09 5.88 -2.91 -0.02 4.07 16 42 H 0.05 2.08 6.81 -2.39 -0.02 2.06 16 43 H 0.05 2.10 7.17 -2.39 -0.02 2.08 16 44 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -71.02 377.23 3.42 -67.60 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.23 Total: 23.39 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.80 Total: -23.88 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.27 Total: -75.09 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -1.07 Total: -28.52 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.09 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -1.16 Total: -6.59 kcal Total: -71.02 3.42 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118226285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.008 kcal (2) G-P(sol) polarization free energy of solvation -71.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds