Wall clock time and date at job start Tue Mar 31 2020 13:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47269 * 2 1 4 4 C 1.52998 * 109.47065 * 180.45732 * 3 2 1 5 5 C 1.52998 * 115.54856 * 295.37943 * 4 3 2 6 6 N 1.46499 * 109.47491 * 278.98966 * 5 4 3 7 7 S 1.65600 * 120.00166 * 164.85922 * 6 5 4 8 8 O 1.42100 * 106.40209 * 311.45626 * 7 6 5 9 9 O 1.42106 * 106.40214 * 178.54010 * 7 6 5 10 10 C 1.76193 * 107.21974 * 64.99889 * 7 6 5 11 11 C 1.38640 * 119.75308 * 90.00366 * 10 7 6 12 12 C 1.37613 * 120.25401 * 179.70590 * 11 10 7 13 13 C 1.40719 * 119.74088 * 0.26904 * 12 11 10 14 14 C 1.41399 * 120.24353 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99619 * 331.41968 * 14 13 12 16 16 C 1.39940 * 120.00067 * 151.42523 * 14 13 12 17 17 N 1.30824 * 120.00346 * 343.50576 * 16 14 13 18 18 Si 1.86804 * 120.00025 * 163.50911 * 16 14 13 19 19 H 1.48498 * 109.47243 * 94.95762 * 18 16 14 20 20 H 1.48502 * 109.47162 * 214.96284 * 18 16 14 21 21 H 1.48497 * 109.46762 * 334.96026 * 18 16 14 22 22 C 1.40719 * 119.51427 * 0.02562 * 13 12 11 23 23 C 1.37621 * 119.74173 * 359.97438 * 22 13 12 24 24 C 1.52993 * 117.52036 * 81.08479 * 4 3 2 25 25 C 1.53004 * 117.49756 * 149.71945 * 4 3 2 26 26 H 1.09004 * 109.46965 * 60.00623 * 1 2 3 27 27 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47358 * 300.00511 * 1 2 3 29 29 H 1.08996 * 109.47358 * 239.99489 * 2 1 3 30 30 H 1.09004 * 109.46965 * 119.99377 * 2 1 3 31 31 H 1.09001 * 109.47132 * 60.45286 * 3 2 1 32 32 H 1.09003 * 109.46540 * 300.45392 * 3 2 1 33 33 H 1.08999 * 109.47126 * 158.98640 * 5 4 3 34 34 H 1.09002 * 109.47307 * 38.98649 * 5 4 3 35 35 H 0.97008 * 120.00027 * 344.85573 * 6 5 4 36 36 H 1.08005 * 119.87238 * 359.97075 * 11 10 7 37 37 H 1.07992 * 120.12979 * 180.29281 * 12 11 10 38 38 H 0.97001 * 120.00362 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.12523 * 180.02562 * 22 13 12 40 40 H 1.07999 * 119.87114 * 180.02562 * 23 22 13 41 41 H 1.09001 * 117.50021 * 214.96878 * 24 4 3 42 42 H 1.09001 * 117.49866 * 359.97438 * 24 4 3 43 43 H 1.08997 * 117.49939 * 359.96235 * 25 4 3 44 44 H 1.08998 * 117.49923 * 144.99556 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0115 5 6 4.2391 0.8475 1.2291 6 7 4.2631 1.8484 2.2985 7 16 4.5780 1.3871 3.8575 8 8 3.7376 0.2726 4.1237 9 8 4.5644 2.5746 4.6379 10 6 6.2328 0.7836 3.8987 11 6 7.2772 1.6564 4.1625 12 6 8.5730 1.1950 4.2032 13 6 8.8365 -0.1675 3.9701 14 6 10.1638 -0.6532 4.0098 15 1 10.9858 0.0007 3.7584 16 6 10.4124 -1.9811 4.3747 17 7 9.4859 -2.6771 4.9818 18 14 12.0674 -2.7599 3.9951 19 1 12.9546 -2.6395 5.1798 20 1 11.8750 -4.1948 3.6644 21 1 12.6881 -2.0645 2.8391 22 6 7.7693 -1.0432 3.6972 23 6 6.4813 -0.5596 3.6616 24 6 4.2668 1.2357 -1.3578 25 6 4.2713 2.6163 -0.6980 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6833 1.9540 0.8940 32 1 1.6700 1.9586 -0.8859 33 1 5.2595 0.5520 0.9850 34 1 3.6776 -0.0257 1.5613 35 1 4.0946 2.7815 2.0935 36 1 7.0725 2.7018 4.3410 37 1 9.3845 1.8758 4.4135 38 1 9.6583 -3.5975 5.2351 39 1 7.9602 -2.0909 3.5173 40 1 5.6606 -1.2298 3.4527 41 1 5.2020 0.6758 -1.3597 42 1 3.6352 1.0993 -2.2356 43 1 3.6427 3.3882 -1.1420 44 1 5.2094 2.9645 -0.2659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131379696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:51 Heat of formation + Delta-G solvation = -61.891454 kcal Electronic energy + Delta-G solvation = -25219.110314 eV Core-core repulsion = 21648.659025 eV Total energy + Delta-G solvation = -3570.451289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.91212 -37.57777 -36.45798 -35.10558 -34.11414 -33.99131 -33.62603 -30.25212 -29.49443 -27.66732 -25.84416 -25.74307 -22.72371 -21.62729 -21.51202 -21.14385 -19.23912 -18.75658 -17.60055 -17.07915 -16.58228 -15.96027 -15.53447 -15.36117 -15.11836 -14.41984 -14.12765 -13.94918 -13.52989 -13.35304 -13.21932 -12.88731 -12.80092 -12.42356 -12.20001 -12.11560 -11.76663 -11.72998 -11.52666 -11.44502 -11.41009 -11.34678 -11.27950 -11.21947 -10.92168 -10.86394 -10.69251 -10.43809 -10.16465 -9.81600 -9.74545 -9.63885 -9.50106 -9.00070 -7.92878 -7.71388 -7.12053 -4.79440 1.26870 2.25097 2.87963 2.89299 2.90995 2.96046 3.52467 3.67890 3.91550 4.27247 4.49808 4.54912 4.64453 4.78733 4.86938 5.08723 5.16193 5.24317 5.31760 5.36359 5.56706 5.57921 5.61723 5.73818 5.78663 5.83467 5.88219 5.93814 6.05867 6.07751 6.10393 6.18541 6.20116 6.27123 6.31358 6.67595 6.72810 6.88893 7.03779 7.32468 7.36729 7.41433 7.60659 7.76126 7.97657 8.31730 8.51489 8.63911 9.81432 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.003365 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.837949 B = 8319.921987 C = 8848.265008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.080 4.080 4 C -0.132 4.132 5 C 0.157 3.843 6 N -1.123 6.123 7 S 2.694 3.306 8 O -0.983 6.983 9 O -0.987 6.987 10 C -0.785 4.785 11 C 0.002 3.998 12 C -0.237 4.237 13 C 0.143 3.857 14 C -0.441 4.441 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.769 5.769 18 Si 0.916 3.084 19 H -0.267 1.267 20 H -0.271 1.271 21 H -0.257 1.257 22 C -0.179 4.179 23 C -0.017 4.017 24 C -0.166 4.166 25 C -0.172 4.172 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.410 0.590 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.289 0.711 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 3.883 -11.380 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.117 4.117 4 C -0.133 4.133 5 C 0.031 3.969 6 N -0.879 5.879 7 S 2.792 3.208 8 O -0.974 6.974 9 O -0.977 6.977 10 C -0.881 4.881 11 C -0.018 4.018 12 C -0.257 4.257 13 C 0.139 3.861 14 C -0.469 4.469 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.391 5.391 18 Si 0.739 3.261 19 H -0.192 1.192 20 H -0.196 1.196 21 H -0.181 1.181 22 C -0.199 4.199 23 C -0.037 4.037 24 C -0.204 4.204 25 C -0.209 4.209 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.474 3.503 -10.518 14.583 hybrid contribution 1.423 -0.219 -0.410 1.497 sum -8.052 3.284 -10.929 13.966 Atomic orbital electron populations 1.21769 0.96073 1.01564 1.01522 1.21548 0.95498 0.96778 1.02640 1.21123 0.91397 0.97210 1.02012 1.21657 0.94714 1.03584 0.93360 1.20707 1.00099 0.90554 0.85514 1.55700 1.89057 1.16955 1.26200 1.01197 0.74972 0.72855 0.71734 1.93483 1.66788 1.53764 1.83331 1.93490 1.88458 1.48645 1.67137 1.29191 1.19683 1.03341 1.35838 1.20173 0.92588 0.96486 0.92601 1.21064 0.95103 0.96637 1.12944 1.17849 0.93337 0.91091 0.83784 1.19893 0.93615 0.95609 1.37764 0.89496 1.26101 0.99577 0.96997 0.92224 1.69815 1.34610 1.10438 1.24277 0.86163 0.80970 0.78799 0.80184 1.19158 1.19619 1.18065 1.21262 0.91666 1.00011 1.06994 1.20264 0.96856 0.92178 0.94429 1.23037 1.02397 0.99825 0.95106 1.23029 1.02666 0.91495 1.03757 0.93113 0.92789 0.92718 0.91934 0.91197 0.91294 0.92015 0.91425 0.90000 0.75754 0.87805 0.88167 0.90001 0.86435 0.87868 0.88391 0.88775 0.88871 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.26 5.77 -26.73 -0.15 -1.41 16 3 C -0.08 -0.79 5.10 -26.73 -0.14 -0.92 16 4 C -0.13 -1.40 1.60 -154.51 -0.25 -1.64 16 5 C 0.16 2.10 6.09 -4.04 -0.02 2.08 16 6 N -1.12 -16.32 5.97 -10.61 -0.06 -16.39 16 7 S 2.69 51.54 5.73 -107.50 -0.62 50.92 16 8 O -0.98 -21.00 16.73 -57.17 -0.96 -21.95 16 9 O -0.99 -20.96 17.26 -57.17 -0.99 -21.94 16 10 C -0.78 -17.12 5.97 -39.29 -0.23 -17.36 16 11 C 0.00 0.04 9.49 -39.66 -0.38 -0.34 16 12 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 13 C 0.14 3.61 5.53 -106.82 -0.59 3.02 16 14 C -0.44 -10.81 9.04 -37.74 -0.34 -11.15 16 15 H 0.09 2.01 7.90 -52.48 -0.41 1.60 16 16 C 0.07 1.69 5.13 -17.34 -0.09 1.60 16 17 N -0.77 -18.57 11.16 55.55 0.62 -17.95 16 18 Si 0.92 17.04 29.59 -169.99 -5.03 12.01 16 19 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 22 C -0.18 -4.43 8.67 -38.87 -0.34 -4.77 16 23 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 24 C -0.17 -1.57 9.90 -26.73 -0.26 -1.83 16 25 C -0.17 -1.66 9.68 -26.72 -0.26 -1.92 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.79 6.74 -51.93 -0.35 0.44 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.08 1.14 6.18 -51.93 -0.32 0.81 16 35 H 0.41 5.09 8.45 -34.47 -0.29 4.80 16 36 H 0.10 2.10 7.60 -52.48 -0.40 1.70 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 39 H 0.12 2.94 6.43 -52.49 -0.34 2.60 16 40 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 41 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -29.50 375.43 -11.52 -41.02 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.70 Total: 10.98 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: -3.44 Total: -42.37 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.56 Total: -34.34 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.94 Total: -43.90 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.62 Total: 50.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.50 -11.52 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131379696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.871 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds