Wall clock time and date at job start Tue Mar 31 2020 14:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.52996 * 109.47167 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47061 * 299.99888 * 4 3 2 6 6 C 1.53003 * 109.47214 * 60.00176 * 4 3 2 7 7 O 1.42892 * 109.47160 * 64.99827 * 6 4 3 8 8 N 1.46505 * 109.47259 * 180.02562 * 4 3 2 9 9 C 1.34772 * 120.00116 * 179.97438 * 8 4 3 10 10 O 1.21555 * 120.00074 * 0.02562 * 9 8 4 11 11 C 1.47857 * 120.00035 * 179.97438 * 9 8 4 12 12 C 1.39681 * 120.09952 * 359.72260 * 11 9 8 13 13 C 1.38041 * 120.03367 * 179.78662 * 12 11 9 14 14 C 1.38176 * 120.24806 * 0.47371 * 13 12 11 15 15 C 1.39188 * 120.20271 * 359.77938 * 14 13 12 16 16 S 1.76197 * 120.01943 * 179.97438 * 15 14 13 17 17 C 1.76198 * 99.99972 * 265.53065 * 16 15 14 18 18 H 1.07995 * 120.00055 * 5.12118 * 17 16 15 19 19 C 1.38731 * 119.99644 * 185.12213 * 17 16 15 20 20 N 1.31621 * 120.00442 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48512 * 109.46823 * 89.99854 * 21 19 17 23 23 H 1.48493 * 109.47165 * 210.00177 * 21 19 17 24 24 H 1.48504 * 109.47055 * 330.00141 * 21 19 17 25 25 C 1.38878 * 119.95276 * 359.97438 * 15 14 13 26 26 H 1.08999 * 109.47267 * 59.99782 * 1 2 3 27 27 H 1.08999 * 109.47151 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47376 * 300.00312 * 1 2 3 29 29 H 1.08996 * 109.47296 * 239.99857 * 2 1 3 30 30 H 1.08999 * 109.47013 * 119.99730 * 2 1 3 31 31 H 1.08996 * 109.47129 * 59.99754 * 3 2 1 32 32 H 1.08999 * 109.47205 * 300.00256 * 3 2 1 33 33 H 1.09002 * 109.46660 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47040 * 300.00126 * 5 4 3 35 35 H 1.08999 * 109.47097 * 60.00017 * 5 4 3 36 36 H 1.09006 * 109.46851 * 304.99990 * 6 4 3 37 37 H 1.09000 * 109.47288 * 185.00373 * 6 4 3 38 38 H 0.96699 * 114.00056 * 180.02562 * 7 6 4 39 39 H 0.97001 * 119.99295 * 359.97438 * 8 4 3 40 40 H 1.07995 * 119.98005 * 0.02562 * 12 11 9 41 41 H 1.08002 * 119.87488 * 180.20978 * 13 12 11 42 42 H 1.08000 * 119.90326 * 179.76891 * 14 13 12 43 43 H 0.96991 * 119.99990 * 180.02562 * 20 19 17 44 44 H 1.07996 * 120.11575 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0794 0.7215 1.2503 6 6 4.0805 0.7211 -1.2483 7 8 3.7030 1.4589 -2.4123 8 7 4.0583 2.8238 0.0013 9 6 5.3834 3.0700 0.0024 10 8 6.1733 2.1461 0.0025 11 6 5.8762 4.4640 0.0025 12 6 4.9704 5.5273 -0.0045 13 6 5.4320 6.8282 0.0000 14 6 6.7897 7.0851 0.0015 15 6 7.7013 6.0332 0.0032 16 16 9.4315 6.3663 0.0045 17 6 9.7591 6.2899 -1.7251 18 1 8.9454 6.1624 -2.4236 19 6 11.0622 6.3937 -2.1894 20 7 12.0540 6.5486 -1.3380 21 14 11.4097 6.3120 -4.0230 22 1 11.3593 7.6805 -4.5978 23 1 12.7578 5.7307 -4.2460 24 1 10.3879 5.4601 -4.6830 25 6 7.2461 4.7212 0.0039 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9564 -0.8899 33 1 5.1694 0.7211 1.2504 34 1 3.7157 1.2354 2.1399 35 1 3.7161 -0.3062 1.2503 36 1 3.6459 -0.2775 -1.2943 37 1 5.1668 0.6428 -1.2042 38 1 3.9939 1.0587 -3.2432 39 1 3.4279 3.5610 0.0008 40 1 3.9084 5.3314 -0.0096 41 1 4.7294 7.6484 -0.0020 42 1 7.1447 8.1050 0.0013 43 1 12.9650 6.6215 -1.6627 44 1 7.9511 3.9030 0.0056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135387444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:00 Heat of formation + Delta-G solvation = -76.450627 kcal Electronic energy + Delta-G solvation = -24861.058407 eV Core-core repulsion = 21289.975785 eV Total energy + Delta-G solvation = -3571.082622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44781 -38.53327 -37.21411 -35.69399 -33.89823 -32.49136 -31.73313 -30.52777 -29.86326 -27.05638 -26.12589 -25.55293 -24.08439 -22.57117 -22.04431 -20.25644 -19.47589 -18.30579 -17.40941 -17.39565 -16.14987 -15.91695 -15.56868 -15.19384 -15.03886 -14.83566 -14.42272 -14.28341 -13.89266 -13.68733 -13.53301 -13.33717 -13.04681 -12.87905 -12.39288 -12.35100 -12.24010 -12.01604 -11.70396 -11.59919 -11.41632 -11.13629 -11.10001 -11.06005 -10.92355 -10.77591 -10.68396 -10.12653 -9.91405 -9.42091 -9.14390 -9.06388 -8.96102 -8.53486 -7.99747 -6.69224 -6.26944 -4.00590 1.22151 1.71033 3.09189 3.10352 3.21681 3.25277 3.29705 3.49808 4.06635 4.12621 4.29503 4.43500 4.58214 4.70202 4.88278 4.89657 5.09269 5.11203 5.13326 5.22370 5.25558 5.29594 5.37073 5.45980 5.49673 5.57522 5.61449 5.63998 5.69350 5.77990 5.83453 5.90401 5.93542 5.98122 6.04328 6.21569 6.30449 6.53370 6.64264 6.68282 6.97089 7.23688 7.51970 7.59345 7.61763 8.34656 8.39030 9.18909 10.79808 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002900 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.224804 B = 9654.288732 C =10270.846839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.183 3.817 5 C -0.168 4.168 6 C 0.059 3.941 7 O -0.567 6.567 8 N -0.715 5.715 9 C 0.570 3.430 10 O -0.537 6.537 11 C -0.153 4.153 12 C -0.089 4.089 13 C -0.142 4.142 14 C -0.056 4.056 15 C -0.107 4.107 16 S -0.036 6.036 17 C -0.518 4.518 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.871 5.871 21 Si 0.921 3.079 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.271 1.271 25 C -0.019 4.019 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.377 0.623 39 H 0.398 0.602 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.306 -9.865 2.828 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.157 4.157 4 C 0.097 3.903 5 C -0.226 4.226 6 C -0.019 4.019 7 O -0.371 6.371 8 N -0.367 5.367 9 C 0.359 3.641 10 O -0.415 6.415 11 C -0.158 4.158 12 C -0.108 4.108 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.218 4.218 16 S 0.198 5.802 17 C -0.666 4.666 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.506 5.506 21 Si 0.747 3.253 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.196 1.196 25 C -0.041 4.041 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.223 0.777 39 H 0.234 0.766 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.022 -9.908 4.184 23.613 hybrid contribution -0.740 -0.294 -2.581 2.701 sum -21.761 -10.202 1.603 24.088 Atomic orbital electron populations 1.21758 0.95616 1.01618 1.01878 1.21619 0.96000 0.96111 1.02449 1.21802 0.92876 0.98126 1.02938 1.20312 0.93775 0.82118 0.94128 1.22261 1.04249 1.00010 0.96055 1.22724 1.00551 0.93466 0.85189 1.86428 1.81214 1.53413 1.16094 1.45842 1.06956 1.07725 1.76198 1.18313 0.81796 0.88898 0.75068 1.90685 1.55509 1.45524 1.49793 1.19893 0.94774 0.92103 1.09022 1.21141 0.98110 0.92680 0.98872 1.21051 0.95815 0.96176 1.03098 1.21947 0.92298 0.99520 0.93977 1.22838 1.03324 0.94077 1.01556 1.83587 0.92678 1.91440 1.12449 1.22834 0.95600 1.57896 0.90237 0.90646 1.25002 0.94970 0.94428 0.99212 1.69986 0.99821 1.46436 1.34355 0.86124 0.77857 0.78545 0.82813 1.20171 1.20667 1.19568 1.21924 0.93580 0.97077 0.91480 0.92674 0.92726 0.92744 0.91561 0.91467 0.91395 0.90499 0.89854 0.91941 0.91523 0.93143 0.91266 0.77676 0.76645 0.86591 0.85927 0.85136 0.92085 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.86 5.24 -26.73 -0.14 -1.00 16 3 C -0.12 -0.98 4.28 -26.73 -0.11 -1.09 16 4 C 0.18 1.95 0.61 -131.81 -0.08 1.87 16 5 C -0.17 -1.76 8.05 37.16 0.30 -1.46 16 6 C 0.06 0.67 5.42 37.16 0.20 0.87 16 7 O -0.57 -6.54 12.96 -35.23 -0.46 -7.00 16 8 N -0.72 -8.84 4.82 -48.53 -0.23 -9.07 16 9 C 0.57 9.33 7.19 -12.33 -0.09 9.24 16 10 O -0.54 -10.23 12.60 5.32 0.07 -10.16 16 11 C -0.15 -2.66 5.87 -105.00 -0.62 -3.27 16 12 C -0.09 -1.28 9.54 -39.11 -0.37 -1.65 16 13 C -0.14 -2.10 10.02 -39.68 -0.40 -2.50 16 14 C -0.06 -1.03 9.79 -39.25 -0.38 -1.42 16 15 C -0.11 -2.34 5.45 -38.99 -0.21 -2.55 16 16 S -0.04 -0.94 21.41 -107.50 -2.30 -3.24 16 17 C -0.52 -14.78 9.46 30.91 0.29 -14.49 16 18 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 19 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 20 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 21 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.02 -0.39 9.34 -38.92 -0.36 -0.76 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.47 6.32 -51.93 -0.33 0.15 16 30 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.69 7.82 -51.93 -0.41 0.28 16 33 H 0.08 1.12 6.16 -51.93 -0.32 0.80 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 36 H 0.05 0.46 6.18 -51.93 -0.32 0.14 16 37 H 0.07 0.98 6.32 -51.93 -0.33 0.65 16 38 H 0.38 3.01 9.12 45.56 0.42 3.43 16 39 H 0.40 4.08 6.50 -40.82 -0.27 3.81 16 40 H 0.12 1.22 6.40 -52.49 -0.34 0.89 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.14 3.09 7.65 -52.49 -0.40 2.68 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -33.35 369.81 -8.81 -42.16 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.46 Total: 6.80 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.71 Total: -16.78 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.50 Total: -33.98 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.39 Total: -17.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.30 Total: -3.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.35 -8.81 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135387444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.287 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds