Wall clock time and date at job start Tue Mar 31 2020 14:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47111 * 2 1 4 4 C 1.53003 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47311 * 59.99445 * 4 3 2 6 6 C 1.53003 * 109.46899 * 299.99342 * 4 3 2 7 7 O 1.42898 * 109.47444 * 300.00201 * 6 4 3 8 8 N 1.46493 * 109.47060 * 179.97438 * 4 3 2 9 9 C 1.34783 * 120.00266 * 179.97438 * 8 4 3 10 10 O 1.21554 * 119.99505 * 0.02562 * 9 8 4 11 11 C 1.47857 * 120.00551 * 180.02562 * 9 8 4 12 12 C 1.39683 * 120.10031 * 0.02562 * 11 9 8 13 13 C 1.38039 * 120.04013 * 179.97438 * 12 11 9 14 14 C 1.38176 * 120.24026 * 359.67736 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.59964 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76206 * 100.00127 * 265.25129 * 16 15 14 18 18 H 1.07994 * 120.00039 * 5.12620 * 17 16 15 19 19 C 1.38732 * 119.99565 * 185.12088 * 17 16 15 20 20 N 1.31631 * 119.99351 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00533 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99756 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00026 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00015 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09001 * 109.47140 * 300.00401 * 1 2 3 27 27 H 1.09006 * 109.47243 * 60.00456 * 1 2 3 28 28 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47792 * 239.99462 * 2 1 3 30 30 H 1.09006 * 109.47243 * 119.99544 * 2 1 3 31 31 H 1.09001 * 109.47446 * 59.99786 * 3 2 1 32 32 H 1.09004 * 109.47026 * 299.99468 * 3 2 1 33 33 H 1.08998 * 109.47202 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.46977 * 300.00554 * 5 4 3 35 35 H 1.08996 * 109.46715 * 60.00455 * 5 4 3 36 36 H 1.09005 * 109.46510 * 60.00349 * 6 4 3 37 37 H 1.08998 * 109.47101 * 180.02562 * 6 4 3 38 38 H 0.96698 * 114.00087 * 179.97438 * 7 6 4 39 39 H 0.97000 * 120.00523 * 0.02562 * 8 4 3 40 40 H 1.08002 * 119.97685 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.87763 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31426 * 14 13 12 43 43 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.12344 * 180.29777 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0806 0.7210 -1.2482 6 6 4.0794 0.7216 1.2503 7 8 3.6026 1.3955 2.4167 8 7 4.0582 2.8237 0.0000 9 6 5.3834 3.0701 0.0010 10 8 6.1733 2.1462 0.0018 11 6 5.8763 4.4641 0.0009 12 6 4.9705 5.5274 0.0004 13 6 5.4320 6.8283 0.0009 14 6 6.7897 7.0851 0.0086 15 6 7.7012 6.0333 0.0033 16 16 9.4314 6.3663 0.0050 17 6 9.7591 6.2918 -1.7247 18 1 8.9455 6.1651 -2.4234 19 6 11.0623 6.3960 -2.1888 20 7 11.3070 6.3409 -3.4810 21 14 12.4696 6.6147 -0.9802 22 1 12.9844 5.2823 -0.5737 23 1 13.5594 7.3910 -1.6245 24 1 11.9840 7.3444 0.2184 25 6 7.2461 4.7212 0.0023 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 5.1705 0.7206 -1.2475 34 1 3.7172 -0.3066 -1.2481 35 1 3.7177 1.2347 -2.1384 36 1 3.7160 -0.3061 1.2503 37 1 5.1694 0.7220 1.2511 38 1 3.8872 0.9919 3.2481 39 1 3.4280 3.5610 -0.0003 40 1 3.9084 5.3315 -0.0003 41 1 4.7293 7.6485 0.0001 42 1 7.1447 8.1051 0.0141 43 1 12.2181 6.4134 -3.8056 44 1 7.9511 3.9031 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135387465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:03 Heat of formation + Delta-G solvation = -75.667213 kcal Electronic energy + Delta-G solvation = -24836.813359 eV Core-core repulsion = 21265.764709 eV Total energy + Delta-G solvation = -3571.048650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49275 -38.60395 -37.27753 -35.71585 -33.92047 -32.49059 -31.78138 -30.62292 -29.92578 -27.04235 -26.15378 -25.67159 -24.13537 -22.64784 -22.11657 -20.31715 -19.50278 -18.40063 -17.45222 -17.37010 -16.19688 -15.97686 -15.55429 -15.30946 -15.10217 -14.93163 -14.46722 -14.34410 -13.91538 -13.69145 -13.50472 -13.39586 -13.03056 -12.90742 -12.47712 -12.35916 -12.27736 -12.04464 -11.89695 -11.69761 -11.42091 -11.32274 -11.17177 -11.09416 -10.90465 -10.79892 -10.61162 -10.17436 -9.90746 -9.47139 -9.18654 -9.07742 -9.06989 -8.60892 -8.13428 -7.12326 -6.32210 -4.07441 1.14450 1.62245 2.86576 3.08556 3.10777 3.27625 3.39184 3.51358 4.01712 4.10981 4.27029 4.44161 4.59326 4.69839 4.85621 4.88494 4.91362 5.05925 5.07754 5.10262 5.20650 5.21466 5.27162 5.37721 5.46736 5.57033 5.61263 5.63862 5.69994 5.70425 5.81172 5.83854 5.92412 5.95835 6.00626 6.20400 6.24772 6.50537 6.56073 6.60518 6.85459 7.14045 7.46295 7.57590 7.92095 8.34259 8.45586 9.11720 10.77288 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.002772 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.375873 B =10099.733867 C =10441.870815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.183 3.817 5 C -0.169 4.169 6 C 0.059 3.941 7 O -0.568 6.568 8 N -0.716 5.716 9 C 0.570 3.430 10 O -0.536 6.536 11 C -0.152 4.152 12 C -0.085 4.085 13 C -0.140 4.140 14 C -0.052 4.052 15 C -0.086 4.086 16 S -0.113 6.113 17 C -0.508 4.508 18 H 0.091 0.909 19 C 0.094 3.906 20 N -0.876 5.876 21 Si 0.858 3.142 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.017 4.017 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.376 0.624 39 H 0.399 0.601 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.023 -9.363 8.938 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.157 4.157 4 C 0.097 3.903 5 C -0.227 4.227 6 C -0.019 4.019 7 O -0.372 6.372 8 N -0.368 5.368 9 C 0.359 3.641 10 O -0.414 6.414 11 C -0.157 4.157 12 C -0.104 4.104 13 C -0.160 4.160 14 C -0.073 4.073 15 C -0.196 4.196 16 S 0.121 5.879 17 C -0.655 4.655 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.513 5.513 21 Si 0.683 3.317 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.038 4.038 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.222 0.778 39 H 0.234 0.766 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.082 0.918 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.813 -9.425 9.188 23.786 hybrid contribution -0.216 -0.174 -0.405 0.491 sum -20.028 -9.598 8.782 23.883 Atomic orbital electron populations 1.21757 0.95632 1.01603 1.01866 1.21600 0.95987 0.96099 1.02409 1.21789 0.92781 0.98166 1.02924 1.20315 0.93896 0.81975 0.94120 1.22264 1.04289 1.00029 0.96086 1.22720 0.99880 0.94274 0.85058 1.86427 1.77308 1.57620 1.15889 1.45864 1.06917 1.07853 1.76137 1.18293 0.81849 0.88838 0.75155 1.90688 1.55518 1.45472 1.49723 1.19868 0.94616 0.92240 1.08930 1.21184 0.98264 0.92644 0.98295 1.21042 0.95684 0.96276 1.02951 1.21884 0.92335 0.99464 0.93655 1.22179 1.00594 0.94224 1.02645 1.83059 0.98465 1.92111 1.14296 1.22245 0.97433 1.58044 0.87755 0.89100 1.24748 0.98088 0.93411 0.95189 1.69929 1.21374 1.47471 1.12482 0.86729 0.82622 0.79953 0.82429 1.19044 1.19810 1.16339 1.21871 0.93795 0.96911 0.91268 0.92691 0.92736 0.92744 0.91498 0.91603 0.90429 0.91422 0.89837 0.91488 0.91852 0.93107 0.91131 0.77762 0.76600 0.86377 0.85668 0.84961 0.91824 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.15 0.37 -0.55 16 2 C -0.12 -0.86 5.23 -26.73 -0.14 -1.00 16 3 C -0.12 -0.97 4.24 -26.73 -0.11 -1.08 16 4 C 0.18 1.93 0.62 -131.82 -0.08 1.85 16 5 C -0.17 -1.84 8.05 37.16 0.30 -1.54 16 6 C 0.06 0.64 5.38 37.16 0.20 0.84 16 7 O -0.57 -5.91 12.85 -35.23 -0.45 -6.36 16 8 N -0.72 -8.67 4.92 -48.53 -0.24 -8.91 16 9 C 0.57 9.14 7.19 -12.32 -0.09 9.05 16 10 O -0.54 -10.04 12.55 5.32 0.07 -9.98 16 11 C -0.15 -2.57 5.87 -105.00 -0.62 -3.18 16 12 C -0.08 -1.18 9.54 -39.12 -0.37 -1.55 16 13 C -0.14 -2.00 10.02 -39.68 -0.40 -2.40 16 14 C -0.05 -0.93 9.79 -39.25 -0.38 -1.31 16 15 C -0.09 -1.81 5.45 -39.00 -0.21 -2.02 16 16 S -0.11 -2.77 19.38 -107.50 -2.08 -4.85 16 17 C -0.51 -14.66 10.01 30.91 0.31 -14.35 16 18 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 19 C 0.09 2.74 5.50 -17.45 -0.10 2.64 16 20 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 21 Si 0.86 21.15 27.74 -169.99 -4.71 16.43 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.24 -5.71 6.74 56.52 0.38 -5.33 16 25 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 30 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 31 H 0.08 0.68 7.68 -51.93 -0.40 0.28 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 34 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 37 H 0.07 0.96 6.16 -51.93 -0.32 0.64 16 38 H 0.38 2.52 9.12 45.56 0.42 2.93 16 39 H 0.40 3.97 6.50 -40.82 -0.27 3.71 16 40 H 0.12 1.19 6.40 -52.49 -0.34 0.86 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -33.44 367.03 -8.30 -41.75 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.50 Total: 7.38 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.69 Total: -15.32 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.54 Total: -34.58 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.39 Total: -16.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.08 Total: -4.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.44 -8.30 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135387465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.920 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds