Wall clock time and date at job start Tue Mar 31 2020 14:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47111 * 2 1 4 4 C 1.53003 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47311 * 59.99445 * 4 3 2 6 6 C 1.53003 * 109.46899 * 299.99342 * 4 3 2 7 7 O 1.42898 * 109.47444 * 300.00201 * 6 4 3 8 8 N 1.46493 * 109.47060 * 179.97438 * 4 3 2 9 9 C 1.34783 * 120.00266 * 179.97438 * 8 4 3 10 10 O 1.21554 * 119.99505 * 0.02562 * 9 8 4 11 11 C 1.47857 * 120.00551 * 180.02562 * 9 8 4 12 12 C 1.39683 * 120.10031 * 0.02562 * 11 9 8 13 13 C 1.38039 * 120.04013 * 179.97438 * 12 11 9 14 14 C 1.38176 * 120.24026 * 359.67736 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.59964 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76206 * 100.00127 * 265.25129 * 16 15 14 18 18 H 1.07994 * 120.00039 * 5.12620 * 17 16 15 19 19 C 1.38732 * 119.99565 * 185.12088 * 17 16 15 20 20 N 1.31631 * 119.99351 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00533 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99756 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00026 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00015 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09001 * 109.47140 * 300.00401 * 1 2 3 27 27 H 1.09006 * 109.47243 * 60.00456 * 1 2 3 28 28 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47792 * 239.99462 * 2 1 3 30 30 H 1.09006 * 109.47243 * 119.99544 * 2 1 3 31 31 H 1.09001 * 109.47446 * 59.99786 * 3 2 1 32 32 H 1.09004 * 109.47026 * 299.99468 * 3 2 1 33 33 H 1.08998 * 109.47202 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.46977 * 300.00554 * 5 4 3 35 35 H 1.08996 * 109.46715 * 60.00455 * 5 4 3 36 36 H 1.09005 * 109.46510 * 60.00349 * 6 4 3 37 37 H 1.08998 * 109.47101 * 180.02562 * 6 4 3 38 38 H 0.96698 * 114.00087 * 179.97438 * 7 6 4 39 39 H 0.97000 * 120.00523 * 0.02562 * 8 4 3 40 40 H 1.08002 * 119.97685 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.87763 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31426 * 14 13 12 43 43 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.12344 * 180.29777 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0806 0.7210 -1.2482 6 6 4.0794 0.7216 1.2503 7 8 3.6026 1.3955 2.4167 8 7 4.0582 2.8237 0.0000 9 6 5.3834 3.0701 0.0010 10 8 6.1733 2.1462 0.0018 11 6 5.8763 4.4641 0.0009 12 6 4.9705 5.5274 0.0004 13 6 5.4320 6.8283 0.0009 14 6 6.7897 7.0851 0.0086 15 6 7.7012 6.0333 0.0033 16 16 9.4314 6.3663 0.0050 17 6 9.7591 6.2918 -1.7247 18 1 8.9455 6.1651 -2.4234 19 6 11.0623 6.3960 -2.1888 20 7 11.3070 6.3409 -3.4810 21 14 12.4696 6.6147 -0.9802 22 1 12.9844 5.2823 -0.5737 23 1 13.5594 7.3910 -1.6245 24 1 11.9840 7.3444 0.2184 25 6 7.2461 4.7212 0.0023 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 5.1705 0.7206 -1.2475 34 1 3.7172 -0.3066 -1.2481 35 1 3.7177 1.2347 -2.1384 36 1 3.7160 -0.3061 1.2503 37 1 5.1694 0.7220 1.2511 38 1 3.8872 0.9919 3.2481 39 1 3.4280 3.5610 -0.0003 40 1 3.9084 5.3315 -0.0003 41 1 4.7293 7.6485 0.0001 42 1 7.1447 8.1051 0.0141 43 1 12.2181 6.4134 -3.8056 44 1 7.9511 3.9031 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135387465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:02 Heat of formation + Delta-G solvation = -99.763168 kcal Electronic energy + Delta-G solvation = -24837.858238 eV Core-core repulsion = 21265.764709 eV Total energy + Delta-G solvation = -3572.093529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62019 -39.76974 -38.40722 -36.51297 -34.82861 -34.72787 -32.85053 -31.98156 -31.03880 -27.93170 -27.75666 -26.96389 -25.31457 -23.86839 -23.09000 -21.44225 -20.44992 -20.04428 -19.03779 -18.25160 -17.27778 -17.19586 -17.14004 -16.65362 -16.23790 -16.18795 -15.70363 -15.53269 -15.07596 -14.97360 -14.71750 -14.39620 -14.32609 -13.97059 -13.72186 -13.61829 -13.25416 -13.10430 -13.08842 -13.02222 -12.78229 -12.62727 -12.41765 -12.29380 -12.01553 -11.86365 -11.58652 -11.50724 -11.23402 -11.09631 -10.98681 -10.52786 -10.20691 -9.91814 -9.75133 -9.15486 -8.54928 -6.29079 -0.20305 0.20325 1.05332 1.30296 1.43016 1.64606 1.80552 2.05702 2.20782 2.59929 2.83129 2.96526 3.25460 3.57364 3.79647 3.88005 3.90800 3.99576 4.15680 4.23636 4.30347 4.39092 4.41598 4.51698 4.56560 4.63116 4.66873 4.72296 4.85331 4.89016 4.93462 5.00178 5.05577 5.17857 5.21492 5.29379 5.33167 5.42580 5.43513 5.48920 5.54208 5.67915 5.82356 6.09134 6.53142 6.81458 6.87427 7.18584 8.58813 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.002772 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.375873 B =10099.733867 C =10441.870815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.108 4.108 4 C 0.177 3.823 5 C -0.166 4.166 6 C 0.062 3.938 7 O -0.576 6.576 8 N -0.697 5.697 9 C 0.565 3.435 10 O -0.572 6.572 11 C -0.158 4.158 12 C -0.062 4.062 13 C -0.122 4.122 14 C -0.060 4.060 15 C -0.120 4.120 16 S -0.115 6.115 17 C -0.523 4.523 18 H 0.045 0.955 19 C 0.040 3.960 20 N -0.920 5.920 21 Si 0.922 3.078 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.227 1.227 25 C -0.042 4.042 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.391 0.609 39 H 0.412 0.588 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.140 0.860 43 H 0.278 0.722 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.360 -8.837 10.368 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.146 4.146 4 C 0.091 3.909 5 C -0.224 4.224 6 C -0.016 4.016 7 O -0.383 6.383 8 N -0.349 5.349 9 C 0.354 3.646 10 O -0.453 6.453 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.141 4.141 14 C -0.081 4.081 15 C -0.230 4.230 16 S 0.119 5.881 17 C -0.670 4.670 18 H 0.064 0.936 19 C -0.165 4.165 20 N -0.557 5.557 21 Si 0.743 3.257 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.150 1.150 25 C -0.064 4.064 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.240 0.760 39 H 0.250 0.750 40 H 0.187 0.813 41 H 0.194 0.806 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.200 -8.893 10.634 27.026 hybrid contribution 0.571 -0.411 -0.855 1.107 sum -22.628 -9.304 9.780 26.349 Atomic orbital electron populations 1.21738 0.94771 1.02107 1.02058 1.21603 0.96685 0.95196 1.02542 1.21735 0.90207 0.99214 1.03455 1.20544 0.95692 0.80818 0.93821 1.22232 1.01910 1.01725 0.96560 1.22620 0.97853 0.95645 0.85493 1.86373 1.77211 1.58189 1.16569 1.45764 1.05541 1.09310 1.74272 1.18277 0.82980 0.88079 0.75293 1.90689 1.56812 1.46319 1.51461 1.20043 0.93641 0.94007 1.08638 1.21740 1.00182 0.91440 0.94659 1.21554 0.94630 0.97934 0.99996 1.22075 0.93669 0.98827 0.93499 1.22073 0.98599 0.95703 1.06669 1.82602 1.02775 1.92377 1.10369 1.22368 0.96549 1.57829 0.90240 0.93649 1.25741 1.00811 0.92852 0.97103 1.70034 1.22467 1.48672 1.14563 0.85763 0.79212 0.80320 0.80403 1.18709 1.18066 1.15002 1.21619 0.95287 0.95778 0.93719 0.92676 0.92363 0.92163 0.91166 0.91720 0.90439 0.90249 0.93454 0.89222 0.91424 0.90871 0.94596 0.75984 0.75018 0.81264 0.80608 0.84180 0.91245 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.34 5.23 30.59 0.16 -1.18 16 3 C -0.11 -1.42 4.24 30.60 0.13 -1.29 16 4 C 0.18 3.43 0.62 3.61 0.00 3.43 16 5 C -0.17 -3.49 8.05 71.98 0.58 -2.91 16 6 C 0.06 1.29 5.38 71.98 0.39 1.67 16 7 O -0.58 -10.93 12.85 -148.98 -1.91 -12.85 16 8 N -0.70 -15.51 4.92 -425.74 -2.10 -17.61 16 9 C 0.57 18.11 7.19 86.79 0.62 18.73 16 10 O -0.57 -22.60 12.55 -3.89 -0.05 -22.65 16 11 C -0.16 -5.28 5.87 -20.11 -0.12 -5.40 16 12 C -0.06 -1.49 9.54 22.57 0.22 -1.27 16 13 C -0.12 -3.00 10.02 22.21 0.22 -2.78 16 14 C -0.06 -2.06 9.79 22.48 0.22 -1.84 16 15 C -0.12 -5.19 5.45 22.65 0.12 -5.07 16 16 S -0.12 -5.83 19.38 -56.49 -1.09 -6.92 16 17 C -0.52 -31.82 10.01 67.94 0.68 -31.14 16 18 H 0.05 3.06 8.02 -2.91 -0.02 3.04 16 19 C 0.04 2.39 5.50 84.84 0.47 2.86 16 20 N -0.92 -57.67 13.97 21.64 0.30 -57.37 16 21 Si 0.92 44.56 27.74 68.60 1.90 46.46 16 22 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.23 -10.40 6.74 99.48 0.67 -9.73 16 25 C -0.04 -1.79 9.34 22.70 0.21 -1.58 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.07 0.73 6.43 -2.39 -0.02 0.72 16 30 H 0.06 0.73 6.43 -2.38 -0.02 0.72 16 31 H 0.08 1.07 7.68 -2.39 -0.02 1.05 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 1.36 6.17 -2.39 -0.01 1.35 16 34 H 0.09 1.42 6.43 -2.39 -0.02 1.41 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.16 6.43 -2.38 -0.02 1.14 16 37 H 0.04 1.00 6.16 -2.39 -0.01 0.99 16 38 H 0.39 4.63 9.12 -74.06 -0.68 3.95 16 39 H 0.41 6.61 6.50 -92.71 -0.60 6.01 16 40 H 0.17 2.35 6.40 -2.91 -0.02 2.33 16 41 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 44 H 0.11 5.09 7.65 -2.91 -0.02 5.07 16 Total: -1.00 -79.35 367.03 1.39 -77.97 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.28 Total: 21.39 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 4.62 Total: -28.42 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.79 Total: -74.98 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.96 Total: -35.49 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.09 Total: -6.92 kcal Total: -79.35 1.39 -77.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135387465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.797 kcal (2) G-P(sol) polarization free energy of solvation -79.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds