Wall clock time and date at job start Tue Mar 31 2020 14:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47221 * 2 1 4 4 C 1.52996 * 109.47232 * 239.99632 * 2 1 3 5 5 O 1.42902 * 109.46877 * 119.99252 * 2 1 3 6 6 C 1.35900 * 116.99847 * 62.90877 * 5 2 1 7 7 C 1.38733 * 120.05883 * 175.72326 * 6 5 2 8 8 C 1.38145 * 119.94461 * 180.02562 * 7 6 5 9 9 C 1.38268 * 120.05447 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.93810 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47217 * 90.00485 * 10 9 8 12 12 C 1.34770 * 120.00171 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99882 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00347 * 179.97438 * 12 11 10 15 15 S 1.81000 * 109.47071 * 179.97438 * 14 12 11 16 16 C 1.76204 * 99.99481 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00323 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99765 * 180.02562 * 16 15 14 19 19 N 1.31635 * 119.99720 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47356 * 90.00369 * 20 18 16 22 22 H 1.48500 * 109.47026 * 210.00046 * 20 18 16 23 23 H 1.48496 * 109.47034 * 330.00014 * 20 18 16 24 24 C 1.38254 * 120.11418 * 0.25368 * 9 8 7 25 25 C 1.38149 * 120.05522 * 359.44637 * 24 9 8 26 26 H 1.09002 * 109.47133 * 317.84707 * 1 2 3 27 27 H 1.08999 * 109.46929 * 77.84305 * 1 2 3 28 28 H 1.08997 * 109.47781 * 197.84643 * 1 2 3 29 29 H 1.09001 * 109.47089 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46634 * 299.99474 * 3 2 1 31 31 H 1.08996 * 109.47111 * 59.99898 * 3 2 1 32 32 H 1.09002 * 109.47220 * 288.10541 * 4 2 1 33 33 H 1.08997 * 109.47012 * 48.10764 * 4 2 1 34 34 H 1.09005 * 109.47044 * 168.10961 * 4 2 1 35 35 H 1.07997 * 120.02792 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.97139 * 180.02562 * 8 7 6 37 37 H 1.09005 * 109.46410 * 209.99508 * 10 9 8 38 38 H 1.08996 * 109.47633 * 329.99601 * 10 9 8 39 39 H 0.96996 * 119.99888 * 359.97438 * 11 10 9 40 40 H 1.08997 * 109.46814 * 299.99801 * 14 12 11 41 41 H 1.08998 * 109.46640 * 59.99775 * 14 12 11 42 42 H 0.97002 * 119.99324 * 180.02562 * 19 18 16 43 43 H 1.08006 * 119.97706 * 179.70307 * 24 9 8 44 44 H 1.08005 * 120.02803 * 180.24957 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0062 -0.6735 1.1669 6 6 1.6919 -1.9898 1.2910 7 6 2.1954 -2.7274 2.3527 8 6 1.8748 -4.0654 2.4762 9 6 1.0533 -4.6698 1.5425 10 6 0.7058 -6.1298 1.6795 11 7 -0.5130 -6.2686 2.4805 12 6 -1.0155 -7.4926 2.7363 13 8 -0.4590 -8.4793 2.3029 14 6 -2.2689 -7.6355 3.5607 15 16 -2.6864 -9.3890 3.7251 16 6 -4.1457 -9.2655 4.7047 17 1 -4.5107 -8.2960 5.0100 18 6 -4.8263 -10.4142 5.0841 19 7 -4.3811 -11.5959 4.7123 20 14 -6.3738 -10.2833 6.1220 21 1 -7.5583 -10.1742 5.2331 22 1 -6.5031 -11.4935 6.9727 23 1 -6.2902 -9.0780 6.9854 24 6 0.5550 -3.9384 0.4803 25 6 0.8676 -2.5985 0.3557 26 1 -0.3633 0.7619 0.6897 27 1 -0.3633 0.2164 -1.0046 28 1 -0.3634 -0.9781 0.3149 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.8600 -1.7917 -1.1496 33 1 1.5141 -0.3445 -2.1264 34 1 3.1092 -0.5416 -1.3614 35 1 2.8374 -2.2559 3.0820 36 1 2.2662 -4.6399 3.3028 37 1 0.5414 -6.5583 0.6908 38 1 1.5253 -6.6539 2.1710 39 1 -0.9578 -5.4795 2.8274 40 1 -2.1044 -7.2066 4.5492 41 1 -3.0887 -7.1117 3.0692 42 1 -4.8569 -12.3986 4.9771 43 1 -0.0826 -4.4139 -0.2504 44 1 0.4748 -2.0266 -0.4720 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139205338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:39 Heat of formation + Delta-G solvation = -63.707986 kcal Electronic energy + Delta-G solvation = -23792.362213 eV Core-core repulsion = 20221.832154 eV Total energy + Delta-G solvation = -3570.530059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84801 -40.63285 -39.06227 -35.87465 -34.99555 -34.57547 -32.34877 -31.94931 -30.40898 -28.37471 -28.35561 -27.68134 -26.37475 -23.80664 -22.72819 -21.78044 -21.24001 -19.87425 -18.35817 -17.98243 -17.55205 -17.22765 -16.87278 -16.53184 -16.29411 -16.23817 -15.79737 -15.47629 -15.01937 -14.89202 -14.70769 -14.54726 -14.40765 -14.14487 -13.84733 -13.36619 -13.17984 -13.15713 -13.05631 -12.96350 -12.88394 -12.87183 -12.65907 -12.57729 -12.46773 -11.74317 -11.70416 -11.61081 -11.33816 -11.13611 -10.98688 -10.27016 -10.13214 -9.90625 -9.09408 -8.65765 -8.33971 -6.11895 0.28122 0.36745 1.28706 1.42982 1.48329 1.58945 1.62251 2.21625 2.26987 2.31726 2.84601 3.00030 3.34280 3.69135 3.71465 3.81201 3.87557 3.90793 3.96329 4.02456 4.24751 4.31882 4.38248 4.47656 4.52238 4.57449 4.61640 4.72926 4.73472 4.74748 4.83683 4.89960 4.93867 5.07407 5.14102 5.22508 5.27611 5.28657 5.39241 5.41654 5.42747 5.62816 5.79407 6.20632 6.48656 6.51563 7.07275 7.24018 8.75206 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.001957 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.646551 B =14303.130597 C =14839.172171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.099 3.901 3 C -0.137 4.137 4 C -0.201 4.201 5 O -0.322 6.322 6 C 0.133 3.867 7 C -0.167 4.167 8 C -0.062 4.062 9 C -0.147 4.147 10 C 0.169 3.831 11 N -0.709 5.709 12 C 0.534 3.466 13 O -0.566 6.566 14 C -0.130 4.130 15 S -0.150 6.150 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 C -0.066 4.066 25 C -0.220 4.220 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.414 0.586 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.271 0.729 43 H 0.137 0.863 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.307 29.510 -10.773 33.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.062 3.938 3 C -0.194 4.194 4 C -0.258 4.258 5 O -0.237 6.237 6 C 0.087 3.913 7 C -0.185 4.185 8 C -0.080 4.080 9 C -0.148 4.148 10 C 0.046 3.954 11 N -0.362 5.362 12 C 0.320 3.680 13 O -0.444 6.444 14 C -0.281 4.281 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.085 4.085 25 C -0.238 4.238 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.250 0.750 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.155 0.845 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 13.347 27.850 -11.384 32.915 hybrid contribution -1.596 0.971 1.095 2.165 sum 11.751 28.822 -10.289 32.782 Atomic orbital electron populations 1.22886 0.94157 1.04031 1.04501 1.22083 0.94527 0.93624 0.83551 1.21851 1.02047 0.91625 1.03873 1.22929 1.02729 1.02555 0.97590 1.86144 1.73197 1.19788 1.44543 1.19138 0.93830 0.83580 0.94728 1.20596 1.04702 0.93910 0.99326 1.21035 0.95433 0.93681 0.97889 1.19638 1.02507 0.94654 0.97984 1.20096 0.86594 0.92831 0.95858 1.45883 1.28249 1.07402 1.54713 1.20061 0.84931 0.83361 0.79619 1.90693 1.61665 1.39138 1.52909 1.23376 0.98557 1.02827 1.03317 1.85562 1.34082 1.03050 1.69615 1.23208 1.11919 0.96326 1.37975 0.89938 1.26138 1.01826 0.93929 0.97330 1.70188 1.40930 0.98532 1.45073 0.84947 0.76885 0.78306 0.77802 1.19278 1.20296 1.18241 1.21115 0.97222 0.93352 0.96796 1.22025 1.03099 0.96385 1.02305 0.91571 0.89022 0.90721 0.91771 0.88414 0.91773 0.90410 0.88966 0.91778 0.84440 0.84288 0.91260 0.91353 0.74977 0.87301 0.87236 0.91998 0.84467 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 8.11 71.98 0.58 -1.34 16 2 C 0.10 1.12 1.11 -10.79 -0.01 1.11 16 3 C -0.14 -1.13 8.74 71.98 0.63 -0.50 16 4 C -0.20 -1.92 8.08 71.98 0.58 -1.33 16 5 O -0.32 -5.54 9.79 -92.43 -0.90 -6.45 16 6 C 0.13 2.34 6.06 22.51 0.14 2.47 16 7 C -0.17 -2.93 9.99 22.37 0.22 -2.71 16 8 C -0.06 -1.09 9.69 22.25 0.22 -0.87 16 9 C -0.15 -2.73 5.25 -19.85 -0.10 -2.84 16 10 C 0.17 3.92 5.80 85.63 0.50 4.42 16 11 N -0.71 -18.42 5.55 -466.78 -2.59 -21.01 16 12 C 0.53 19.88 7.85 87.66 0.69 20.57 16 13 O -0.57 -26.37 15.86 -3.04 -0.05 -26.42 16 14 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 15 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 16 C -0.55 -31.37 9.50 67.96 0.65 -30.72 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 20 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 C -0.07 -1.09 9.69 22.25 0.22 -0.88 16 25 C -0.22 -3.37 5.73 22.37 0.13 -3.24 16 26 H 0.07 0.66 8.01 -2.39 -0.02 0.64 16 27 H 0.09 0.53 7.84 -2.39 -0.02 0.51 16 28 H 0.07 0.88 4.75 -2.39 -0.01 0.87 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.89 4.48 -2.39 -0.01 0.88 16 33 H 0.09 0.51 7.89 -2.39 -0.02 0.49 16 34 H 0.06 0.65 8.09 -2.38 -0.02 0.63 16 35 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.07 1.69 8.08 -2.38 -0.02 1.68 16 38 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 39 H 0.41 8.43 8.46 -92.71 -0.78 7.64 16 40 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 41 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.17 1.93 3.60 -2.91 -0.01 1.92 16 Total: -1.00 -76.24 373.39 3.17 -73.07 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.23 Total: 19.89 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.33 Total: -19.42 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -2.30 Total: -76.90 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.95 Total: -32.86 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -76.24 3.17 -73.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139205338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.363 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds