Wall clock time and date at job start Tue Mar 31 2020 14:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 116.99586 * 2 1 4 4 C 1.38746 * 120.05648 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94224 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05484 * 359.75349 * 5 4 3 7 7 C 1.38244 * 120.11240 * 0.50173 * 6 5 4 8 8 C 1.50697 * 119.97030 * 179.76867 * 7 6 5 9 9 C 1.53006 * 109.47239 * 239.72405 * 8 7 6 10 10 C 1.52999 * 109.46961 * 119.73044 * 8 7 6 11 11 C 1.52997 * 109.47466 * 359.72694 * 8 7 6 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 8 7 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 8 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47156 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00151 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00054 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00100 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47251 * 59.99888 * 21 19 17 23 23 H 1.48499 * 109.47003 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47069 * 299.99979 * 21 19 17 25 25 C 1.38169 * 120.05243 * 359.49490 * 7 6 5 26 26 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47722 * 300.00067 * 1 2 3 28 28 H 1.09007 * 109.47286 * 60.00552 * 1 2 3 29 29 H 1.08001 * 120.03062 * 359.95748 * 4 3 2 30 30 H 1.07998 * 119.96835 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.94090 * 180.27285 * 6 5 4 32 32 H 1.08993 * 109.46955 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47050 * 300.00336 * 9 8 7 34 34 H 1.09001 * 109.47002 * 60.00070 * 9 8 7 35 35 H 1.09002 * 109.46716 * 299.99650 * 10 8 7 36 36 H 1.09000 * 109.47486 * 59.99568 * 10 8 7 37 37 H 1.09001 * 109.47362 * 180.02562 * 10 8 7 38 38 H 1.09002 * 109.47153 * 59.99773 * 11 8 7 39 39 H 1.09001 * 109.46832 * 299.99964 * 11 8 7 40 40 H 0.96996 * 119.99606 * 0.02562 * 12 11 8 41 41 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 42 42 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 43 43 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.02453 * 180.22632 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0062 7 6 4.0559 2.5172 0.0004 8 6 5.5606 2.5984 0.0007 9 6 6.1091 1.9059 -1.2486 10 6 6.1084 1.9053 1.2499 11 6 5.9923 4.0663 0.0012 12 7 7.4552 4.1451 0.0022 13 6 8.0652 5.3469 0.0023 14 8 7.4031 6.3631 0.0020 15 6 9.5700 5.4280 0.0038 16 16 10.0806 7.1645 0.0043 17 6 11.8317 6.9686 0.0054 18 1 12.2643 5.9790 0.0060 19 6 12.6551 8.0859 0.0065 20 7 12.1278 9.2920 0.0073 21 14 14.5114 7.8782 0.0084 22 1 14.9268 7.1278 -1.2038 23 1 15.1590 9.2145 0.0100 24 1 14.9243 7.1271 1.2211 25 6 3.4310 1.2849 -0.0001 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 0.2127 2.3203 0.0003 30 1 1.3338 4.5114 0.0019 31 1 3.7920 4.6382 0.0111 32 1 7.1975 1.9643 -1.2480 33 1 5.8016 0.8602 -1.2489 34 1 5.7188 2.3997 -2.1385 35 1 5.7177 2.3986 2.1399 36 1 5.8009 0.8595 1.2496 37 1 7.1968 1.9644 1.2504 38 1 5.6016 4.5596 0.8913 39 1 5.6020 4.5600 -0.8887 40 1 7.9846 3.3324 0.0021 41 1 9.9595 4.9349 0.8945 42 1 9.9614 4.9341 -0.8855 43 1 12.7032 10.0729 0.0077 44 1 4.0206 0.3801 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152478833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:28 Heat of formation + Delta-G solvation = -59.737614 kcal Electronic energy + Delta-G solvation = -24083.495579 eV Core-core repulsion = 20513.137688 eV Total energy + Delta-G solvation = -3570.357891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74687 -39.50360 -38.35609 -36.26641 -33.30571 -32.41306 -31.05144 -29.88774 -29.37861 -27.62043 -27.51071 -26.18770 -25.40723 -22.97315 -22.40679 -20.40919 -19.68154 -18.16634 -17.59665 -16.58420 -16.50806 -16.25821 -16.09271 -15.42014 -15.36796 -14.79329 -14.62884 -14.30135 -14.27651 -13.88382 -13.70953 -13.57091 -13.16292 -13.12146 -12.67380 -12.55671 -12.55202 -12.22128 -12.05213 -11.72124 -11.63088 -11.47804 -11.16464 -11.05453 -11.02664 -11.00751 -10.75660 -10.72342 -9.80876 -9.38362 -9.08929 -9.04834 -8.84231 -8.47476 -8.22075 -6.48167 -6.20038 -3.90519 1.03205 1.19275 2.88117 3.07889 3.13732 3.24556 3.28766 3.33087 3.47497 3.74919 4.22046 4.29490 4.40304 4.53621 4.71723 4.72100 4.74414 4.77639 4.91228 5.04628 5.07161 5.14941 5.19014 5.20883 5.30134 5.38186 5.51395 5.54229 5.60327 5.69060 5.71838 5.78721 5.84563 5.91628 5.94161 6.02414 6.05591 6.15915 6.19300 6.37227 6.45954 6.65758 7.07192 7.60672 7.73672 8.36487 8.64819 9.25084 10.87314 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.040136 B = 0.002022 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.462145 B =13844.048768 C =14339.848470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.156 4.156 7 C -0.027 4.027 8 C -0.036 4.036 9 C -0.141 4.141 10 C -0.141 4.141 11 C 0.131 3.869 12 N -0.736 5.736 13 C 0.532 3.468 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.145 4.145 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.687 -20.443 -0.015 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.232 4.232 5 C -0.094 4.094 6 C -0.174 4.174 7 C -0.027 4.027 8 C -0.036 4.036 9 C -0.198 4.198 10 C -0.198 4.198 11 C 0.006 3.994 12 N -0.392 5.392 13 C 0.318 3.682 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.163 4.163 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.687 -18.731 -0.013 29.420 hybrid contribution 1.821 -1.545 0.000 2.388 sum -20.866 -20.276 -0.013 29.095 Atomic orbital electron populations 1.23045 0.78431 1.03874 1.01366 1.86063 1.21346 1.27050 1.88848 1.18959 0.92235 0.84094 0.96690 1.21230 0.99923 0.92487 1.09552 1.20959 0.94591 0.97015 0.96810 1.21215 0.93821 0.98720 1.03618 1.19421 0.94189 0.92333 0.96777 1.19726 0.90953 0.95697 0.97244 1.21918 1.01138 1.00370 0.96353 1.21919 1.01144 1.00367 0.96353 1.21410 0.80942 0.94479 1.02527 1.46049 1.06675 1.08615 1.77868 1.20285 0.89966 0.82805 0.75183 1.90699 1.66508 1.34494 1.47543 1.23532 0.93592 1.08419 1.04881 1.85393 1.05012 0.96206 1.96715 1.22832 0.91129 0.95450 1.59015 0.90986 1.24988 0.99576 0.94456 0.94554 1.70008 1.35867 0.97619 1.46806 0.86226 0.82979 0.77523 0.78783 1.19952 1.20820 1.19958 1.20145 0.91122 0.98134 1.06907 0.88295 0.92658 0.92666 0.85678 0.85620 0.84954 0.91818 0.91998 0.91972 0.91978 0.91992 0.91816 0.91179 0.91177 0.76801 0.89260 0.89262 0.92144 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.89 10.50 -19.45 -0.20 -3.09 16 3 C 0.13 1.20 6.69 -39.22 -0.26 0.94 16 4 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 5 C -0.08 -0.68 10.04 -39.60 -0.40 -1.07 16 6 C -0.16 -1.55 8.97 -39.56 -0.36 -1.90 16 7 C -0.03 -0.26 4.76 -104.65 -0.50 -0.75 16 8 C -0.04 -0.33 0.61 -155.66 -0.09 -0.42 16 9 C -0.14 -1.17 8.11 37.16 0.30 -0.86 16 10 C -0.14 -1.17 8.11 37.16 0.30 -0.87 16 11 C 0.13 1.54 3.22 -4.04 -0.01 1.53 16 12 N -0.74 -9.75 4.96 -60.29 -0.30 -10.05 16 13 C 0.53 9.89 7.85 -10.99 -0.09 9.80 16 14 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16 15 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.14 -1.38 8.65 -39.43 -0.34 -1.72 16 26 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.33 5.89 -52.49 -0.31 1.02 16 32 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 33 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 37 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 38 H 0.07 0.90 7.50 -51.93 -0.39 0.51 16 39 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 40 H 0.40 4.15 6.16 -40.82 -0.25 3.90 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.13 1.11 7.10 -52.49 -0.37 0.73 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -34.96 372.18 -8.10 -43.06 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.40 Total: 1.34 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -0.39 Total: -12.26 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.43 Total: -35.55 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.12 Total: -14.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.96 -8.10 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152478833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.674 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds