Wall clock time and date at job start Tue Mar 31 2020 14:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 N 1.46497 * 109.47408 * 295.00294 * 5 4 3 8 8 S 1.65602 * 120.00502 * 144.99698 * 7 5 4 9 9 O 1.42101 * 104.27887 * 181.07228 * 8 7 5 10 10 O 1.42099 * 104.27610 * 308.93044 * 8 7 5 11 11 C 1.81400 * 104.44802 * 65.00125 * 8 7 5 12 12 C 1.52995 * 109.47028 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47380 * 180.02562 * 12 11 8 14 14 H 1.08003 * 119.99861 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00427 * 179.97438 * 13 12 11 16 16 N 1.31524 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00387 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47364 * 59.99277 * 17 15 13 19 19 H 1.48495 * 109.47545 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46692 * 299.99689 * 17 15 13 21 21 C 1.50699 * 109.47482 * 174.99860 * 5 4 3 22 22 C 1.38236 * 119.99912 * 79.72929 * 21 5 4 23 23 C 1.38233 * 120.00045 * 179.78941 * 22 21 5 24 24 C 1.38233 * 119.99944 * 0.44003 * 23 22 21 25 25 C 1.38233 * 120.00018 * 359.81457 * 24 23 22 26 26 C 1.38232 * 120.00107 * 359.97438 * 25 24 23 27 27 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 31 31 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99998 * 4 3 2 33 33 H 1.08998 * 109.47533 * 59.99628 * 4 3 2 34 34 H 0.96999 * 119.99953 * 324.99559 * 7 5 4 35 35 H 1.09003 * 109.47024 * 299.99956 * 11 8 7 36 36 H 1.08998 * 109.47428 * 60.00031 * 11 8 7 37 37 H 1.09001 * 109.47247 * 299.99894 * 12 11 8 38 38 H 1.09006 * 109.47638 * 59.99604 * 12 11 8 39 39 H 0.96993 * 120.00036 * 179.97438 * 16 15 13 40 40 H 1.08006 * 119.99710 * 359.97438 * 22 21 5 41 41 H 1.08005 * 119.99852 * 180.27043 * 23 22 21 42 42 H 1.08007 * 119.99899 * 179.83549 * 24 23 22 43 43 H 1.08003 * 120.00170 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.00242 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6578 1.1813 6 1 3.0923 3.4866 1.1811 7 7 4.6427 2.7349 -0.0148 8 16 4.8865 4.1918 -0.7635 9 8 5.7145 3.8802 -1.8755 10 8 3.5780 4.7143 -0.9480 11 6 5.8002 5.1788 0.4537 12 6 6.0887 6.5647 -0.1267 13 6 6.8483 7.3846 0.8842 14 1 7.0998 6.9597 1.8448 15 6 7.2222 8.6770 0.5829 16 7 6.9164 9.1942 -0.5871 17 14 8.1644 9.6929 1.8356 18 1 9.4453 9.0152 2.1600 19 1 8.4454 11.0377 1.2720 20 1 7.3520 9.8333 3.0708 21 6 4.6668 2.7378 2.4118 22 6 5.8776 2.0719 2.4490 23 6 6.6743 2.1487 3.5760 24 6 6.2561 2.8841 4.6692 25 6 5.0429 3.5457 4.6340 26 6 4.2481 3.4724 3.5054 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 2.4772 1.2357 2.1130 33 1 3.7399 0.5067 1.0922 34 1 5.0576 1.9326 -0.3684 35 1 5.2032 5.2818 1.3598 36 1 6.7404 4.6817 0.6926 37 1 6.6855 6.4621 -1.0330 38 1 5.1483 7.0617 -0.3653 39 1 7.1791 10.1036 -0.7989 40 1 6.2024 1.4940 1.5963 41 1 7.6223 1.6320 3.6034 42 1 6.8774 2.9420 5.5508 43 1 4.7163 4.1206 5.4880 44 1 3.3005 3.9896 3.4777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158122841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:44 Heat of formation + Delta-G solvation = -49.651309 kcal Electronic energy + Delta-G solvation = -25473.992276 eV Core-core repulsion = 21904.071760 eV Total energy + Delta-G solvation = -3569.920516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.64669 -37.06916 -36.49969 -35.42289 -34.67198 -33.86003 -31.22362 -31.08965 -30.72702 -30.16444 -25.78873 -25.55760 -22.80457 -22.40715 -21.59771 -20.83812 -19.91949 -18.97742 -17.51154 -17.15091 -16.46545 -16.07410 -15.66048 -15.33081 -15.19314 -14.90629 -14.56173 -14.44972 -14.10727 -13.76917 -13.40939 -13.35840 -13.10697 -12.81640 -12.49289 -12.21533 -12.01019 -11.72268 -11.60622 -11.53187 -11.49947 -11.23524 -11.12405 -11.05152 -10.95807 -10.94578 -10.92766 -10.41704 -10.34585 -9.87749 -9.60537 -9.40016 -9.02109 -8.90628 -8.73385 -8.47699 -6.10039 -4.15045 0.81260 1.30555 1.41075 2.12093 3.13649 3.28118 3.32850 3.34806 3.77083 4.23560 4.39089 4.49338 4.62209 4.78737 4.78973 4.88551 5.00329 5.05627 5.10567 5.15059 5.23599 5.25111 5.39040 5.44630 5.54988 5.60943 5.67452 5.72700 5.75788 5.85465 5.95487 5.96989 6.09026 6.10183 6.44623 6.47140 6.51753 6.54213 6.59790 6.63198 6.98360 7.08454 7.32914 7.39033 7.83394 8.20875 8.88215 9.49310 11.01088 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.004209 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.619487 B = 6650.168748 C = 8158.888592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.100 4.100 4 C -0.107 4.107 5 C 0.190 3.810 6 H 0.102 0.898 7 N -1.118 6.118 8 S 2.589 3.411 9 O -0.968 6.968 10 O -0.966 6.966 11 C -0.584 4.584 12 C 0.029 3.971 13 C -0.517 4.517 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.107 4.107 22 C -0.101 4.101 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.109 4.109 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.412 0.588 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.265 0.735 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -18.783 8.299 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.137 4.137 4 C -0.146 4.146 5 C 0.082 3.918 6 H 0.120 0.880 7 N -0.874 5.874 8 S 2.686 3.314 9 O -0.959 6.959 10 O -0.956 6.956 11 C -0.717 4.717 12 C -0.010 4.010 13 C -0.556 4.556 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.109 4.109 22 C -0.120 4.120 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.134 4.134 26 C -0.128 4.128 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.245 0.755 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.631 -18.265 7.335 21.111 hybrid contribution 1.123 0.317 1.194 1.670 sum -6.508 -17.948 8.530 20.911 Atomic orbital electron populations 1.23862 0.96044 1.01763 1.01917 1.22983 0.96035 0.98492 0.99280 1.20825 0.98304 0.95398 0.99146 1.21740 0.97820 0.95986 0.99063 1.19708 0.90283 1.00380 0.81415 0.87966 1.55906 1.63688 1.26813 1.40973 1.05671 0.75543 0.73984 0.76167 1.93551 1.70357 1.82673 1.49294 1.93539 1.37709 1.79062 1.85296 1.30425 1.12858 1.12971 1.15490 1.18946 0.98517 0.86259 0.97232 1.20955 1.36181 0.97669 1.00841 0.92126 1.25056 0.96012 0.97815 0.95563 1.69947 1.46206 1.15688 1.21124 0.86552 0.80301 0.79244 0.81310 1.20116 1.21096 1.20084 1.20332 0.96232 0.98520 0.95827 1.20921 0.94036 0.99093 0.97922 1.21137 0.99557 0.99505 0.93630 1.21162 0.96452 0.97445 0.98567 1.21123 0.94801 0.99240 0.98238 1.21058 1.00109 0.98501 0.93089 0.88488 0.88781 0.87590 0.90363 0.90837 0.90417 0.91020 0.75450 0.86335 0.86217 0.94988 0.94941 0.92521 0.86080 0.86192 0.86300 0.86025 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 29.02 0.42 -1.26 16 2 C -0.15 -1.31 9.52 -36.02 -0.34 -1.65 16 3 C -0.10 -0.97 5.54 -27.88 -0.15 -1.13 16 4 C -0.11 -0.95 4.77 -26.74 -0.13 -1.08 16 5 C 0.19 2.11 2.40 -69.09 -0.17 1.94 16 6 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 7 N -1.12 -13.89 4.12 -5.89 -0.02 -13.91 16 8 S 2.59 46.20 5.44 -107.50 -0.58 45.62 16 9 O -0.97 -20.13 18.08 -57.54 -1.04 -21.17 16 10 O -0.97 -19.72 17.39 -57.54 -1.00 -20.73 16 11 C -0.58 -11.41 5.66 37.16 0.21 -11.20 16 12 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 13 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 17 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.11 -1.21 4.21 -104.62 -0.44 -1.65 16 22 C -0.10 -1.11 9.32 -39.58 -0.37 -1.48 16 23 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 25 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 26 C -0.11 -1.24 9.67 -39.58 -0.38 -1.62 16 27 H 0.10 0.81 7.84 -52.48 -0.41 0.40 16 28 H 0.09 0.67 8.06 -52.49 -0.42 0.24 16 29 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 31 H 0.07 0.77 7.79 -51.93 -0.40 0.36 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.41 4.13 8.60 -34.47 -0.30 3.84 16 35 H 0.12 2.15 7.75 -51.92 -0.40 1.74 16 36 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.12 1.13 7.58 -52.48 -0.40 0.73 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -34.81 384.02 -11.13 -45.94 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.89 Total: 4.75 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: -3.10 Total: -36.72 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.71 Total: -39.84 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -2.04 Total: -41.90 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 46.20 SS G_CDS: -0.58 Total: 45.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.81 -11.13 -45.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158122841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.709 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds