Wall clock time and date at job start Tue Mar 31 2020 14:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 N 1.46497 * 109.47408 * 295.00294 * 5 4 3 8 8 S 1.65602 * 120.00502 * 144.99698 * 7 5 4 9 9 O 1.42101 * 104.27887 * 181.07228 * 8 7 5 10 10 O 1.42099 * 104.27610 * 308.93044 * 8 7 5 11 11 C 1.81400 * 104.44802 * 65.00125 * 8 7 5 12 12 C 1.52995 * 109.47028 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47380 * 180.02562 * 12 11 8 14 14 H 1.08003 * 119.99861 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00427 * 179.97438 * 13 12 11 16 16 N 1.31524 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00387 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47364 * 59.99277 * 17 15 13 19 19 H 1.48495 * 109.47545 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46692 * 299.99689 * 17 15 13 21 21 C 1.50699 * 109.47482 * 174.99860 * 5 4 3 22 22 C 1.38236 * 119.99912 * 79.72929 * 21 5 4 23 23 C 1.38233 * 120.00045 * 179.78941 * 22 21 5 24 24 C 1.38233 * 119.99944 * 0.44003 * 23 22 21 25 25 C 1.38233 * 120.00018 * 359.81457 * 24 23 22 26 26 C 1.38232 * 120.00107 * 359.97438 * 25 24 23 27 27 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 31 31 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 32 32 H 1.09002 * 109.47153 * 299.99998 * 4 3 2 33 33 H 1.08998 * 109.47533 * 59.99628 * 4 3 2 34 34 H 0.96999 * 119.99953 * 324.99559 * 7 5 4 35 35 H 1.09003 * 109.47024 * 299.99956 * 11 8 7 36 36 H 1.08998 * 109.47428 * 60.00031 * 11 8 7 37 37 H 1.09001 * 109.47247 * 299.99894 * 12 11 8 38 38 H 1.09006 * 109.47638 * 59.99604 * 12 11 8 39 39 H 0.96993 * 120.00036 * 179.97438 * 16 15 13 40 40 H 1.08006 * 119.99710 * 359.97438 * 22 21 5 41 41 H 1.08005 * 119.99852 * 180.27043 * 23 22 21 42 42 H 1.08007 * 119.99899 * 179.83549 * 24 23 22 43 43 H 1.08003 * 120.00170 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.00242 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6578 1.1813 6 1 3.0923 3.4866 1.1811 7 7 4.6427 2.7349 -0.0148 8 16 4.8865 4.1918 -0.7635 9 8 5.7145 3.8802 -1.8755 10 8 3.5780 4.7143 -0.9480 11 6 5.8002 5.1788 0.4537 12 6 6.0887 6.5647 -0.1267 13 6 6.8483 7.3846 0.8842 14 1 7.0998 6.9597 1.8448 15 6 7.2222 8.6770 0.5829 16 7 6.9164 9.1942 -0.5871 17 14 8.1644 9.6929 1.8356 18 1 9.4453 9.0152 2.1600 19 1 8.4454 11.0377 1.2720 20 1 7.3520 9.8333 3.0708 21 6 4.6668 2.7378 2.4118 22 6 5.8776 2.0719 2.4490 23 6 6.6743 2.1487 3.5760 24 6 6.2561 2.8841 4.6692 25 6 5.0429 3.5457 4.6340 26 6 4.2481 3.4724 3.5054 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9314 31 1 1.3585 2.1317 0.0896 32 1 2.4772 1.2357 2.1130 33 1 3.7399 0.5067 1.0922 34 1 5.0576 1.9326 -0.3684 35 1 5.2032 5.2818 1.3598 36 1 6.7404 4.6817 0.6926 37 1 6.6855 6.4621 -1.0330 38 1 5.1483 7.0617 -0.3653 39 1 7.1791 10.1036 -0.7989 40 1 6.2024 1.4940 1.5963 41 1 7.6223 1.6320 3.6034 42 1 6.8774 2.9420 5.5508 43 1 4.7163 4.1206 5.4880 44 1 3.3005 3.9896 3.4777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158122841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:43 Heat of formation + Delta-G solvation = -71.563047 kcal Electronic energy + Delta-G solvation = -25474.942441 eV Core-core repulsion = 21904.071760 eV Total energy + Delta-G solvation = -3570.870680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48700 -38.22580 -37.77979 -37.01366 -35.89308 -35.47902 -33.12991 -32.07991 -31.58317 -30.92267 -27.57883 -26.62632 -23.74693 -23.42261 -23.18321 -21.72509 -20.61174 -20.34813 -19.13017 -18.33612 -18.00170 -17.19910 -17.00722 -16.54225 -16.34960 -16.23635 -15.91364 -15.42914 -15.15225 -14.91815 -14.53855 -14.46552 -14.18040 -13.90612 -13.80044 -13.60041 -13.29772 -13.20316 -13.10462 -12.91574 -12.82377 -12.79919 -12.41951 -12.24362 -12.22744 -12.10912 -11.86921 -11.76546 -11.70944 -11.70061 -11.19827 -10.63829 -10.54235 -10.10874 -9.72652 -9.56532 -8.25660 -6.39257 -0.68341 0.46926 0.59225 1.39513 1.42949 1.46369 1.51154 1.83898 2.37683 2.78187 2.93999 3.07501 3.25121 3.65319 3.88676 3.95746 4.01684 4.10891 4.16040 4.23576 4.27692 4.36179 4.41254 4.50315 4.62164 4.63370 4.75148 4.76326 4.84837 4.95916 5.08399 5.16064 5.20813 5.26909 5.27530 5.28691 5.36815 5.64423 5.68463 5.71350 5.76400 5.80762 5.96506 6.07100 6.14807 6.18951 6.73525 7.30505 8.86500 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.004209 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.619487 B = 6650.168748 C = 8158.888592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.103 4.103 4 C -0.097 4.097 5 C 0.187 3.813 6 H 0.093 0.907 7 N -1.096 6.096 8 S 2.618 3.382 9 O -0.998 6.998 10 O -0.993 6.993 11 C -0.582 4.582 12 C 0.024 3.976 13 C -0.536 4.536 14 H 0.072 0.928 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.263 1.263 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.125 4.125 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.427 0.573 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.005 0.995 38 H 0.006 0.994 39 H 0.267 0.733 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 -20.398 10.284 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C -0.140 4.140 4 C -0.136 4.136 5 C 0.080 3.920 6 H 0.111 0.889 7 N -0.857 5.857 8 S 2.714 3.286 9 O -0.988 6.988 10 O -0.982 6.982 11 C -0.714 4.714 12 C -0.015 4.015 13 C -0.575 4.575 14 H 0.090 0.910 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.143 4.143 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.265 0.735 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.131 -19.890 9.329 23.098 hybrid contribution 0.912 0.747 0.592 1.319 sum -6.219 -19.144 9.922 22.441 Atomic orbital electron populations 1.24018 0.96174 1.02303 1.01401 1.23034 0.96168 0.98424 0.99704 1.20834 0.98334 0.95799 0.99066 1.21696 0.97716 0.95019 0.99177 1.19883 0.90037 1.01545 0.80545 0.88872 1.55361 1.63703 1.25208 1.41395 1.04512 0.74314 0.74482 0.75293 1.93505 1.71059 1.83347 1.50893 1.93505 1.38767 1.80348 1.85619 1.30321 1.14503 1.10097 1.16476 1.18791 0.96628 0.89675 0.96427 1.21427 1.36133 0.98327 1.01569 0.90998 1.26081 0.97009 0.99316 0.97637 1.70093 1.47656 1.16209 1.23388 0.85413 0.79141 0.77296 0.78728 1.18864 1.20862 1.18740 1.20327 0.96574 0.99073 0.95690 1.21168 0.93875 0.99181 0.98654 1.21439 1.00287 0.99502 0.93506 1.21468 0.96588 0.97150 0.99323 1.21386 0.95038 0.99531 0.98652 1.21284 1.00757 0.98811 0.93457 0.88983 0.87333 0.86077 0.91369 0.92088 0.89241 0.89246 0.73542 0.84877 0.84615 0.97660 0.97542 0.92390 0.84599 0.84456 0.84651 0.84728 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 14.32 67.78 0.97 -2.12 16 2 C -0.16 -2.43 9.52 25.65 0.24 -2.18 16 3 C -0.10 -1.89 5.54 29.85 0.17 -1.72 16 4 C -0.10 -1.52 4.77 30.59 0.15 -1.37 16 5 C 0.19 3.87 2.40 44.24 0.11 3.98 16 6 H 0.09 2.14 7.34 -2.39 -0.02 2.12 16 7 N -1.10 -25.76 4.12 -172.54 -0.71 -26.47 16 8 S 2.62 93.59 5.44 -56.49 -0.31 93.28 16 9 O -1.00 -41.70 18.08 -127.65 -2.31 -44.01 16 10 O -0.99 -41.15 17.39 -127.65 -2.22 -43.37 16 11 C -0.58 -22.75 5.66 71.98 0.41 -22.34 16 12 C 0.02 1.25 4.98 29.85 0.15 1.40 16 13 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 14 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 17 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 C -0.11 -2.39 4.21 -19.87 -0.08 -2.47 16 22 C -0.11 -2.16 9.32 22.27 0.21 -1.95 16 23 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 24 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 25 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 26 C -0.12 -2.65 9.67 22.27 0.22 -2.44 16 27 H 0.09 1.47 7.84 -2.91 -0.02 1.45 16 28 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.07 1.37 7.75 -2.39 -0.02 1.36 16 31 H 0.06 1.25 7.79 -2.39 -0.02 1.23 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.43 7.70 8.60 -96.75 -0.83 6.87 16 35 H 0.13 4.76 7.75 -2.39 -0.02 4.74 16 36 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.14 2.14 7.58 -2.91 -0.02 2.12 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.13 2.48 8.04 -2.91 -0.02 2.46 16 Total: -1.00 -75.61 384.02 0.80 -74.81 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.14 Total: 24.65 kcal Atomic # 6 Polarization: -71.48 SS G_CDS: 3.89 Total: -67.59 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -0.43 Total: -83.40 kcal Atomic # 8 Polarization: -82.85 SS G_CDS: -4.53 Total: -87.38 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 93.59 SS G_CDS: -0.31 Total: 93.28 kcal Total: -75.61 0.80 -74.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158122841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.249 kcal (2) G-P(sol) polarization free energy of solvation -75.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds