Wall clock time and date at job start Tue Mar 31 2020 14:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99993 * 2 1 4 4 C 1.52994 * 109.47160 * 124.99822 * 3 2 1 5 5 C 1.53004 * 109.47464 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46827 * 305.00247 * 5 4 3 7 7 N 1.46496 * 109.47009 * 64.99859 * 5 4 3 8 8 S 1.65599 * 120.00146 * 215.00238 * 7 5 4 9 9 O 1.42105 * 104.27655 * 308.92954 * 8 7 5 10 10 O 1.42101 * 104.27764 * 181.07391 * 8 7 5 11 11 C 1.81395 * 104.44748 * 65.00260 * 8 7 5 12 12 C 1.52999 * 109.46986 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47535 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00463 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00103 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47443 * 59.99483 * 17 15 13 19 19 H 1.48505 * 109.47343 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47001 * 299.99442 * 17 15 13 21 21 C 1.50698 * 109.47066 * 185.00389 * 5 4 3 22 22 C 1.38236 * 119.99751 * 279.71995 * 21 5 4 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 5 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 100.00441 * 21 5 4 27 27 H 1.07997 * 119.99712 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.00010 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00208 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47071 * 5.00060 * 3 2 1 31 31 H 1.09001 * 109.47317 * 245.00149 * 3 2 1 32 32 H 1.09003 * 109.46934 * 60.00154 * 4 3 2 33 33 H 1.09001 * 109.47273 * 300.00354 * 4 3 2 34 34 H 0.97001 * 119.99851 * 35.00765 * 7 5 4 35 35 H 1.09003 * 109.47393 * 299.99669 * 11 8 7 36 36 H 1.08994 * 109.47678 * 60.00285 * 11 8 7 37 37 H 1.09004 * 109.47080 * 299.99725 * 12 11 8 38 38 H 1.09005 * 109.47285 * 59.99790 * 12 11 8 39 39 H 0.96996 * 119.99792 * 180.02562 * 16 15 13 40 40 H 1.07998 * 119.99990 * 0.02562 * 22 21 5 41 41 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 42 42 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 43 43 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00149 * 359.96952 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 1 4.2856 2.7978 0.2164 7 7 2.8654 3.7610 1.4221 8 16 3.1012 5.2225 0.6800 9 8 4.4556 5.5453 0.9641 10 8 2.0384 6.0347 1.1598 11 6 2.8872 4.8726 -1.0869 12 6 3.0836 6.1605 -1.8893 13 6 2.9053 5.8700 -3.3572 14 1 2.6753 4.8670 -3.6852 15 6 3.0367 6.8844 -4.2817 16 7 3.3173 8.1057 -3.8824 17 14 2.8164 6.5242 -6.1013 18 1 1.4488 5.9967 -6.3395 19 1 3.0069 7.7742 -6.8801 20 1 3.8178 5.5153 -6.5310 21 6 4.8417 2.6368 2.2704 22 6 4.4789 2.8916 3.5798 23 6 5.4342 2.8674 4.5787 24 6 6.7536 2.5976 4.2672 25 6 7.1172 2.3480 2.9570 26 6 6.1613 2.3679 1.9586 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 3.7399 0.5066 1.0920 33 1 2.4772 1.2356 2.1130 34 1 2.1088 3.6350 2.0159 35 1 3.6228 4.1327 -1.4025 36 1 1.8837 4.4848 -1.2617 37 1 2.3483 6.9008 -1.5739 38 1 4.0874 6.5480 -1.7145 39 1 3.4094 8.8194 -4.5328 40 1 3.4487 3.1057 3.8228 41 1 5.1500 3.0621 5.6024 42 1 7.5002 2.5814 5.0472 43 1 8.1481 2.1376 2.7134 44 1 6.4454 2.1729 0.9351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158122993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:47 Heat of formation + Delta-G solvation = -48.993650 kcal Electronic energy + Delta-G solvation = -25301.590949 eV Core-core repulsion = 21731.698951 eV Total energy + Delta-G solvation = -3569.891998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.61945 -37.06994 -36.51064 -35.40465 -34.62843 -33.89976 -31.20126 -31.16457 -30.73776 -30.15933 -25.78682 -25.61454 -22.82012 -22.40236 -21.65547 -20.85751 -19.90087 -18.95203 -17.51095 -17.18338 -16.42601 -16.17152 -15.66040 -15.40233 -15.04381 -14.94914 -14.59771 -14.43074 -14.24127 -13.59234 -13.45217 -13.36903 -13.08585 -12.82470 -12.52903 -12.40928 -11.93168 -11.75158 -11.56349 -11.53489 -11.46542 -11.28742 -11.08425 -11.07029 -11.02285 -10.96441 -10.91416 -10.43074 -10.37723 -9.84545 -9.58857 -9.44652 -9.06938 -8.89417 -8.70111 -8.50410 -6.12611 -4.18394 0.78267 1.34257 1.42344 2.15064 3.13463 3.26682 3.31749 3.33307 3.77994 4.24213 4.37548 4.43809 4.65660 4.73378 4.81384 4.90605 4.99001 5.00328 5.09594 5.11007 5.22461 5.25358 5.35165 5.43458 5.54727 5.60543 5.61721 5.65863 5.75133 5.79887 5.95654 5.97258 6.06075 6.10133 6.44663 6.46494 6.50163 6.50449 6.62820 6.64871 6.99689 7.07296 7.29421 7.35627 7.79875 8.16866 8.84721 9.46378 10.98400 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.003949 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.932073 B = 7089.217640 C = 8330.216587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.103 4.103 4 C -0.112 4.112 5 C 0.194 3.806 6 H 0.095 0.905 7 N -1.119 6.119 8 S 2.587 3.413 9 O -0.958 6.958 10 O -0.968 6.968 11 C -0.591 4.591 12 C 0.029 3.971 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.090 4.090 22 C -0.101 4.101 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.105 4.105 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.266 0.734 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -17.400 13.513 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.140 4.140 4 C -0.151 4.151 5 C 0.087 3.913 6 H 0.113 0.887 7 N -0.875 5.875 8 S 2.684 3.316 9 O -0.948 6.948 10 O -0.958 6.958 11 C -0.724 4.724 12 C -0.010 4.010 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.091 4.091 22 C -0.119 4.119 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.124 4.124 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.246 0.754 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.579 -16.365 13.812 21.472 hybrid contribution -0.545 -0.603 -1.233 1.477 sum 1.035 -16.968 12.578 21.147 Atomic orbital electron populations 1.23882 0.96072 1.01853 1.01558 1.22930 0.95992 0.98378 0.99572 1.20878 0.98626 0.95747 0.98769 1.21816 0.98142 0.95856 0.99254 1.19653 0.87835 0.87332 0.96524 0.88744 1.55969 1.38270 1.30433 1.62813 1.05754 0.74506 0.72843 0.78448 1.93572 1.35955 1.81649 1.83619 1.93553 1.57161 1.65464 1.79665 1.30474 1.10205 1.11156 1.20542 1.18947 0.98623 0.87801 0.95623 1.20954 1.49573 0.95359 0.90105 0.92089 1.25061 0.94906 0.95004 0.99454 1.69945 1.47566 1.00539 1.34773 0.86542 0.78760 0.77703 0.84338 1.20082 1.21073 1.20072 1.20175 0.94489 0.99574 0.94895 1.20890 0.99543 0.99155 0.92332 1.21107 0.93417 1.00526 0.99127 1.21115 0.96188 1.00265 0.96564 1.21097 0.99257 1.00383 0.93050 1.21018 0.92325 0.99502 0.99529 0.88419 0.88771 0.87564 0.90698 0.90283 0.90321 0.90895 0.75438 0.86415 0.86078 0.94913 0.94852 0.92468 0.86310 0.86322 0.86398 0.86124 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.31 9.52 -36.03 -0.34 -1.65 16 3 C -0.10 -0.94 5.54 -27.89 -0.15 -1.09 16 4 C -0.11 -0.95 4.77 -26.73 -0.13 -1.08 16 5 C 0.19 2.15 2.27 -69.08 -0.16 1.99 16 6 H 0.09 1.02 7.01 -51.93 -0.36 0.66 16 7 N -1.12 -13.88 4.10 -5.88 -0.02 -13.90 16 8 S 2.59 45.79 5.38 -107.50 -0.58 45.21 16 9 O -0.96 -19.96 17.78 -57.54 -1.02 -20.99 16 10 O -0.97 -20.07 18.08 -57.54 -1.04 -21.11 16 11 C -0.59 -10.98 5.90 37.16 0.22 -10.76 16 12 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 13 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.09 -1.08 4.92 -104.63 -0.51 -1.60 16 22 C -0.10 -1.19 9.33 -39.58 -0.37 -1.56 16 23 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.11 -1.24 9.67 -39.58 -0.38 -1.62 16 27 H 0.10 0.86 7.84 -52.49 -0.41 0.45 16 28 H 0.09 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.11 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.07 0.71 7.40 -51.93 -0.38 0.33 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 4.18 8.59 -34.47 -0.30 3.88 16 35 H 0.12 1.92 7.44 -51.92 -0.39 1.53 16 36 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 1.23 7.55 -52.49 -0.40 0.83 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -35.33 384.48 -11.17 -46.49 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.85 Total: 4.35 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: -3.16 Total: -36.23 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.71 Total: -39.57 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.06 Total: -42.09 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 45.79 SS G_CDS: -0.58 Total: 45.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.33 -11.17 -46.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158122993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.501 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds