Wall clock time and date at job start Tue Mar 31 2020 14:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99993 * 2 1 4 4 C 1.52994 * 109.47160 * 124.99822 * 3 2 1 5 5 C 1.53004 * 109.47464 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46827 * 305.00247 * 5 4 3 7 7 N 1.46496 * 109.47009 * 64.99859 * 5 4 3 8 8 S 1.65599 * 120.00146 * 215.00238 * 7 5 4 9 9 O 1.42105 * 104.27655 * 308.92954 * 8 7 5 10 10 O 1.42101 * 104.27764 * 181.07391 * 8 7 5 11 11 C 1.81395 * 104.44748 * 65.00260 * 8 7 5 12 12 C 1.52999 * 109.46986 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47535 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00463 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00103 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47443 * 59.99483 * 17 15 13 19 19 H 1.48505 * 109.47343 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47001 * 299.99442 * 17 15 13 21 21 C 1.50698 * 109.47066 * 185.00389 * 5 4 3 22 22 C 1.38236 * 119.99751 * 279.71995 * 21 5 4 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 5 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 100.00441 * 21 5 4 27 27 H 1.07997 * 119.99712 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.00010 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00208 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47071 * 5.00060 * 3 2 1 31 31 H 1.09001 * 109.47317 * 245.00149 * 3 2 1 32 32 H 1.09003 * 109.46934 * 60.00154 * 4 3 2 33 33 H 1.09001 * 109.47273 * 300.00354 * 4 3 2 34 34 H 0.97001 * 119.99851 * 35.00765 * 7 5 4 35 35 H 1.09003 * 109.47393 * 299.99669 * 11 8 7 36 36 H 1.08994 * 109.47678 * 60.00285 * 11 8 7 37 37 H 1.09004 * 109.47080 * 299.99725 * 12 11 8 38 38 H 1.09005 * 109.47285 * 59.99790 * 12 11 8 39 39 H 0.96996 * 119.99792 * 180.02562 * 16 15 13 40 40 H 1.07998 * 119.99990 * 0.02562 * 22 21 5 41 41 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 42 42 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 43 43 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.00149 * 359.96952 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 1 4.2856 2.7978 0.2164 7 7 2.8654 3.7610 1.4221 8 16 3.1012 5.2225 0.6800 9 8 4.4556 5.5453 0.9641 10 8 2.0384 6.0347 1.1598 11 6 2.8872 4.8726 -1.0869 12 6 3.0836 6.1605 -1.8893 13 6 2.9053 5.8700 -3.3572 14 1 2.6753 4.8670 -3.6852 15 6 3.0367 6.8844 -4.2817 16 7 3.3173 8.1057 -3.8824 17 14 2.8164 6.5242 -6.1013 18 1 1.4488 5.9967 -6.3395 19 1 3.0069 7.7742 -6.8801 20 1 3.8178 5.5153 -6.5310 21 6 4.8417 2.6368 2.2704 22 6 4.4789 2.8916 3.5798 23 6 5.4342 2.8674 4.5787 24 6 6.7536 2.5976 4.2672 25 6 7.1172 2.3480 2.9570 26 6 6.1613 2.3679 1.9586 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 3.7399 0.5066 1.0920 33 1 2.4772 1.2356 2.1130 34 1 2.1088 3.6350 2.0159 35 1 3.6228 4.1327 -1.4025 36 1 1.8837 4.4848 -1.2617 37 1 2.3483 6.9008 -1.5739 38 1 4.0874 6.5480 -1.7145 39 1 3.4094 8.8194 -4.5328 40 1 3.4487 3.1057 3.8228 41 1 5.1500 3.0621 5.6024 42 1 7.5002 2.5814 5.0472 43 1 8.1481 2.1376 2.7134 44 1 6.4454 2.1729 0.9351 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158122993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:46 Heat of formation + Delta-G solvation = -71.543797 kcal Electronic energy + Delta-G solvation = -25302.568796 eV Core-core repulsion = 21731.698951 eV Total energy + Delta-G solvation = -3570.869846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45806 -38.15624 -37.81586 -36.97788 -35.88837 -35.41410 -33.12389 -32.09802 -31.59751 -30.89578 -27.59011 -26.59697 -23.80097 -23.39106 -23.17894 -21.74005 -20.56728 -20.29718 -19.11005 -18.35573 -17.94071 -17.24305 -16.95607 -16.53393 -16.47200 -16.16959 -15.83472 -15.43883 -15.08433 -15.00400 -14.45969 -14.39062 -14.15714 -13.95956 -13.72255 -13.59876 -13.39446 -13.17193 -13.07884 -12.89955 -12.82785 -12.73268 -12.44870 -12.24324 -12.15191 -12.10614 -11.86082 -11.75081 -11.70633 -11.67082 -11.16742 -10.62805 -10.48096 -10.11972 -9.73539 -9.54392 -8.24695 -6.38672 -0.67929 0.49671 0.58241 1.41695 1.44947 1.49963 1.53004 1.86330 2.38957 2.81693 2.93746 3.08901 3.28395 3.66614 3.91609 3.93962 3.99677 4.10305 4.20244 4.23509 4.25223 4.34840 4.37928 4.56887 4.60700 4.64955 4.75538 4.76404 4.87317 4.95777 5.11131 5.16887 5.21075 5.27233 5.28527 5.30954 5.39430 5.62857 5.68376 5.69403 5.77417 5.85085 5.99341 6.06926 6.13624 6.19377 6.74962 7.31587 8.87460 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.003949 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.932073 B = 7089.217640 C = 8330.216587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.108 4.108 4 C -0.099 4.099 5 C 0.189 3.811 6 H 0.097 0.903 7 N -1.098 6.098 8 S 2.613 3.387 9 O -0.991 6.991 10 O -1.001 7.001 11 C -0.587 4.587 12 C 0.022 3.978 13 C -0.537 4.537 14 H 0.078 0.922 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.105 4.105 22 C -0.119 4.119 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.125 4.125 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.425 0.575 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.003 0.997 38 H 0.005 0.995 39 H 0.267 0.733 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -19.941 13.347 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.171 4.171 3 C -0.145 4.145 4 C -0.138 4.138 5 C 0.082 3.918 6 H 0.115 0.885 7 N -0.859 5.859 8 S 2.709 3.291 9 O -0.981 6.981 10 O -0.992 6.992 11 C -0.719 4.719 12 C -0.017 4.017 13 C -0.576 4.576 14 H 0.096 0.904 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.186 1.186 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.143 4.143 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.262 0.738 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.492 -18.921 13.652 23.380 hybrid contribution -0.487 0.145 -1.083 1.196 sum 1.006 -18.776 12.570 22.618 Atomic orbital electron populations 1.24010 0.96325 1.02208 1.01661 1.23019 0.96019 0.98618 0.99445 1.20924 0.98675 0.95965 0.98944 1.21737 0.98071 0.94571 0.99455 1.19909 0.87730 0.87648 0.96513 0.88500 1.55423 1.39126 1.29198 1.62105 1.04687 0.73118 0.73395 0.77861 1.93530 1.37723 1.82884 1.83929 1.93500 1.58035 1.67554 1.80080 1.30349 1.12514 1.08415 1.20653 1.18798 0.96128 0.90357 0.96429 1.21481 1.48812 0.96133 0.91160 0.90413 1.26105 0.94501 0.94716 1.04853 1.70101 1.49067 1.01771 1.36531 0.85392 0.79427 0.77689 0.77930 1.18790 1.21127 1.18643 1.20325 0.94883 1.00185 0.95255 1.21149 1.00391 0.99636 0.92604 1.21438 0.93608 1.00150 1.00026 1.21464 0.96689 0.99591 0.97146 1.21429 1.00169 1.00005 0.93184 1.21305 0.92577 1.00002 1.00459 0.88937 0.87720 0.86306 0.91259 0.90324 0.88860 0.90077 0.73762 0.83830 0.83760 0.97819 0.97628 0.92451 0.85417 0.84480 0.84201 0.84270 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.19 14.32 67.78 0.97 -2.22 16 2 C -0.15 -2.30 9.52 25.65 0.24 -2.06 16 3 C -0.11 -1.72 5.54 29.85 0.17 -1.55 16 4 C -0.10 -1.46 4.77 30.59 0.15 -1.31 16 5 C 0.19 3.85 2.27 44.25 0.10 3.95 16 6 H 0.10 1.93 7.01 -2.39 -0.02 1.91 16 7 N -1.10 -25.85 4.10 -172.52 -0.71 -26.56 16 8 S 2.61 92.47 5.38 -56.49 -0.30 92.17 16 9 O -0.99 -41.79 17.78 -127.65 -2.27 -44.06 16 10 O -1.00 -42.03 18.08 -127.65 -2.31 -44.34 16 11 C -0.59 -21.52 5.90 71.98 0.42 -21.10 16 12 C 0.02 1.13 4.98 29.85 0.15 1.28 16 13 C -0.54 -29.35 9.11 25.60 0.23 -29.11 16 14 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -56.89 13.29 21.45 0.28 -56.61 16 17 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 21 C -0.10 -2.40 4.92 -19.87 -0.10 -2.50 16 22 C -0.12 -2.66 9.33 22.27 0.21 -2.45 16 23 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 24 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 25 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 26 C -0.12 -2.80 9.67 22.27 0.22 -2.58 16 27 H 0.09 1.51 7.84 -2.91 -0.02 1.49 16 28 H 0.10 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 30 H 0.07 1.17 7.40 -2.39 -0.02 1.15 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.43 7.97 8.59 -96.74 -0.83 7.14 16 35 H 0.14 4.46 7.44 -2.39 -0.02 4.44 16 36 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.13 2.46 7.55 -2.91 -0.02 2.44 16 41 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.14 2.00 8.06 -2.92 -0.02 1.98 16 43 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 44 H 0.13 2.56 8.04 -2.91 -0.02 2.53 16 Total: -1.00 -77.26 384.48 0.76 -76.51 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.14 Total: 24.65 kcal Atomic # 6 Polarization: -70.57 SS G_CDS: 3.89 Total: -66.68 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -0.42 Total: -83.17 kcal Atomic # 8 Polarization: -83.82 SS G_CDS: -4.58 Total: -88.39 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 92.47 SS G_CDS: -0.30 Total: 92.17 kcal Total: -77.26 0.76 -76.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158122993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.964 kcal (2) G-P(sol) polarization free energy of solvation -77.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds