Wall clock time and date at job start Tue Mar 31 2020 14:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47311 * 2 1 4 4 C 1.52998 * 109.47236 * 240.00085 * 2 1 3 5 5 C 1.50704 * 109.47338 * 120.00136 * 2 1 3 6 6 N 1.29029 * 124.91138 * 60.28136 * 5 2 1 7 7 C 1.31782 * 117.12005 * 180.23191 * 6 5 2 8 8 C 1.50701 * 122.74946 * 179.75073 * 7 6 5 9 9 C 1.50700 * 109.47177 * 264.72800 * 8 7 6 10 10 O 1.20835 * 119.99600 * 0.02562 * 9 8 7 11 11 O 1.34228 * 120.00368 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00205 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.50701 * 115.55544 * 294.88682 * 13 12 11 15 15 H 1.07995 * 119.99892 * 95.15843 * 14 13 12 16 16 C 1.37875 * 119.99625 * 274.89404 * 14 13 12 17 17 N 1.31516 * 120.00645 * 6.38641 * 16 14 13 18 18 Si 1.86804 * 119.99966 * 186.39037 * 16 14 13 19 19 H 1.48497 * 109.46911 * 59.99497 * 18 16 14 20 20 H 1.48501 * 109.47278 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46934 * 299.99733 * 18 16 14 22 22 C 1.52999 * 117.50107 * 80.55676 * 13 12 11 23 23 C 1.53002 * 117.49851 * 149.21518 * 13 12 11 24 24 C 1.33646 * 114.50061 * 359.47655 * 7 6 5 25 25 S 1.70977 * 124.91695 * 239.97585 * 5 2 1 26 26 H 1.09000 * 109.46425 * 299.99763 * 1 2 3 27 27 H 1.08997 * 109.46913 * 59.99594 * 1 2 3 28 28 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46996 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46991 * 300.00289 * 3 2 1 31 31 H 1.08999 * 109.46682 * 60.00532 * 3 2 1 32 32 H 1.09000 * 109.47221 * 300.00175 * 4 2 1 33 33 H 1.09005 * 109.46997 * 59.99672 * 4 2 1 34 34 H 1.09000 * 109.47541 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47344 * 144.73266 * 8 7 6 36 36 H 1.08998 * 109.46992 * 24.73189 * 8 7 6 37 37 H 1.09001 * 109.46840 * 59.99792 * 12 11 9 38 38 H 1.09000 * 109.47129 * 299.99899 * 12 11 9 39 39 H 0.96998 * 120.00543 * 180.02562 * 17 16 14 40 40 H 1.08998 * 117.50651 * 215.00344 * 22 13 12 41 41 H 1.09007 * 117.49575 * 0.02562 * 22 13 12 42 42 H 1.09004 * 117.50100 * 359.97438 * 23 13 12 43 43 H 1.09000 * 117.49932 * 144.97481 * 23 13 12 44 44 H 1.07997 * 126.03561 * 180.26920 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7841 -1.9418 1.5253 7 6 2.2989 -2.4068 2.6457 8 6 2.0852 -3.8228 3.1151 9 6 0.9276 -3.8632 4.0791 10 8 0.3364 -2.8464 4.3562 11 8 0.5525 -5.0287 4.6292 12 6 -0.5709 -4.9926 5.5484 13 6 -0.8496 -6.4040 6.0689 14 6 -1.3104 -7.3989 5.0351 15 1 -0.5948 -8.0513 4.5568 16 6 -2.6463 -7.4800 4.7038 17 7 -3.4997 -6.6078 5.1944 18 14 -3.2443 -8.8289 3.5581 19 1 -2.9412 -10.1548 4.1540 20 1 -4.7105 -8.6981 3.3623 21 1 -2.5565 -8.7062 2.2476 22 6 0.0314 -6.9242 7.2065 23 6 -1.4234 -6.5357 7.4811 24 6 3.0309 -1.5215 3.3287 25 16 3.0200 -0.0036 2.4339 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.9861 -4.1801 3.6141 36 1 1.8671 -4.4605 2.2585 37 1 -1.4527 -4.6162 5.0298 38 1 -0.3342 -4.3362 6.3859 39 1 -4.4396 -6.6651 4.9616 40 1 0.2778 -7.9860 7.2071 41 1 0.8094 -6.2607 7.5843 42 1 -1.6020 -5.6167 8.0395 43 1 -2.1346 -7.3416 7.6622 44 1 3.5392 -1.7041 4.2639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174744093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:43 Heat of formation + Delta-G solvation = -33.829046 kcal Electronic energy + Delta-G solvation = -24750.748151 eV Core-core repulsion = 21181.513739 eV Total energy + Delta-G solvation = -3569.234411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41486 -39.40871 -37.12712 -36.62811 -35.17225 -31.96062 -31.82989 -28.53284 -27.69732 -27.45272 -26.65754 -25.33051 -24.89812 -21.44094 -21.03966 -19.71762 -19.38403 -19.24209 -17.58194 -17.04684 -16.49223 -15.90405 -15.60104 -15.30566 -14.85897 -14.58531 -14.34692 -14.07490 -13.89722 -13.60538 -13.28424 -13.16271 -12.72098 -12.44675 -12.40695 -12.00910 -11.90940 -11.84361 -11.64989 -11.60385 -11.34199 -11.25539 -11.15008 -10.96024 -10.85003 -10.54445 -10.29207 -10.02322 -9.83434 -9.62758 -9.55870 -9.39049 -8.83170 -8.78889 -8.45885 -8.20587 -6.05905 -4.11361 0.67647 1.30811 1.67700 2.61665 2.79047 3.31733 3.36386 3.38937 3.51221 3.85125 4.40346 4.47307 4.64029 4.67886 4.92847 5.09687 5.19243 5.22800 5.24458 5.26990 5.37037 5.45751 5.50818 5.53536 5.60029 5.67247 5.69415 5.76105 5.81884 5.98953 6.01473 6.10292 6.18750 6.24911 6.33673 6.53614 6.66231 6.72989 7.02577 7.27485 7.36482 7.47572 7.73588 7.87235 8.36453 8.46710 8.90012 9.54577 11.03493 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002979 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.805117 B = 9396.082305 C =10395.416390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.011 3.989 3 C -0.153 4.153 4 C -0.134 4.134 5 C 0.063 3.937 6 N -0.457 5.457 7 C 0.089 3.911 8 C -0.043 4.043 9 C 0.458 3.542 10 O -0.516 6.516 11 O -0.336 6.336 12 C 0.117 3.883 13 C 0.039 3.961 14 C -0.491 4.491 15 H 0.063 0.937 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.205 4.205 23 C -0.146 4.146 24 C -0.247 4.247 25 S 0.116 5.884 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.893 14.604 -8.894 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.007 3.993 3 C -0.211 4.211 4 C -0.192 4.192 5 C -0.216 4.216 6 N -0.171 5.171 7 C -0.043 4.043 8 C -0.083 4.083 9 C 0.300 3.700 10 O -0.406 6.406 11 O -0.252 6.252 12 C 0.044 3.956 13 C 0.038 3.962 14 C -0.529 4.529 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.518 5.518 18 Si 0.720 3.280 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.242 4.242 23 C -0.183 4.183 24 C -0.386 4.386 25 S 0.373 5.627 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 13.616 15.611 -8.955 22.567 hybrid contribution -0.739 -1.470 -0.007 1.646 sum 12.877 14.141 -8.962 21.121 Atomic orbital electron populations 1.21855 0.92081 1.03485 1.02043 1.19233 0.96765 0.93808 0.89476 1.22021 1.01523 0.94379 1.03174 1.21838 1.00968 1.01272 0.95156 1.27004 1.00693 0.93043 1.00850 1.65885 1.21813 1.12144 1.17213 1.19468 0.96874 0.96946 0.91013 1.19761 0.97163 0.92227 0.99142 1.23181 0.84346 0.82433 0.80050 1.90631 1.54387 1.35614 1.59977 1.86503 1.49516 1.32777 1.56367 1.22891 0.85137 0.98568 0.88976 1.18765 0.97879 0.91238 0.88303 1.20351 0.92424 1.18281 1.21846 0.91873 1.25014 0.96805 0.95743 0.95850 1.69986 1.03197 1.34460 1.44149 0.86646 0.77578 0.82419 0.81332 1.20132 1.21274 1.20066 1.23006 0.93164 1.00304 1.07760 1.22546 0.94616 1.01081 1.00105 1.26787 1.09556 0.95951 1.06332 1.83750 1.47804 1.14881 1.16290 0.92384 0.91673 0.91207 0.91887 0.90720 0.91806 0.91280 0.91675 0.92574 0.86317 0.85987 0.90620 0.94428 0.92842 0.90043 0.91571 0.91677 0.89422 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.45 37.16 0.31 -1.09 16 2 C 0.01 0.11 0.99 -155.66 -0.15 -0.05 16 3 C -0.15 -1.11 7.54 37.16 0.28 -0.83 16 4 C -0.13 -1.17 8.45 37.16 0.31 -0.85 16 5 C 0.06 0.79 5.78 -13.45 -0.08 0.72 16 6 N -0.46 -6.96 10.51 -8.05 -0.08 -7.05 16 7 C 0.09 1.31 5.23 -84.22 -0.44 0.87 16 8 C -0.04 -0.62 6.22 -29.03 -0.18 -0.80 16 9 C 0.46 9.02 7.95 36.01 0.29 9.30 16 10 O -0.52 -11.58 15.78 -18.76 -0.30 -11.88 16 11 O -0.34 -7.47 10.16 -39.25 -0.40 -7.87 16 12 C 0.12 2.85 5.29 37.15 0.20 3.04 16 13 C 0.04 0.97 1.61 -155.66 -0.25 0.72 16 14 C -0.49 -13.52 8.77 -34.44 -0.30 -13.82 16 15 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 16 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 17 N -0.88 -25.16 12.93 55.43 0.72 -24.44 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.21 -4.48 9.96 -26.70 -0.27 -4.74 16 23 C -0.15 -3.41 9.43 -26.69 -0.25 -3.67 16 24 C -0.25 -3.15 11.14 29.12 0.32 -2.83 16 25 S 0.12 1.27 21.57 -107.50 -2.32 -1.05 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 7.92 -51.93 -0.41 0.06 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.08 2.05 8.13 -51.93 -0.42 1.63 16 38 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 42 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 44 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -32.08 386.11 -9.02 -41.10 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.13 Total: 1.35 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.30 Total: -12.23 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.63 Total: -31.49 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.69 Total: -19.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.32 Total: -1.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.08 -9.02 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174744093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.272 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds