Wall clock time and date at job start Tue Mar 31 2020 14:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47311 * 2 1 4 4 C 1.52998 * 109.47236 * 240.00085 * 2 1 3 5 5 C 1.50704 * 109.47338 * 120.00136 * 2 1 3 6 6 N 1.29029 * 124.91138 * 60.28136 * 5 2 1 7 7 C 1.31782 * 117.12005 * 180.23191 * 6 5 2 8 8 C 1.50701 * 122.74946 * 179.75073 * 7 6 5 9 9 C 1.50700 * 109.47177 * 264.72800 * 8 7 6 10 10 O 1.20835 * 119.99600 * 0.02562 * 9 8 7 11 11 O 1.34228 * 120.00368 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00205 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.50701 * 115.55544 * 294.88682 * 13 12 11 15 15 H 1.07995 * 119.99892 * 95.15843 * 14 13 12 16 16 C 1.37875 * 119.99625 * 274.89404 * 14 13 12 17 17 N 1.31516 * 120.00645 * 6.38641 * 16 14 13 18 18 Si 1.86804 * 119.99966 * 186.39037 * 16 14 13 19 19 H 1.48497 * 109.46911 * 59.99497 * 18 16 14 20 20 H 1.48501 * 109.47278 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46934 * 299.99733 * 18 16 14 22 22 C 1.52999 * 117.50107 * 80.55676 * 13 12 11 23 23 C 1.53002 * 117.49851 * 149.21518 * 13 12 11 24 24 C 1.33646 * 114.50061 * 359.47655 * 7 6 5 25 25 S 1.70977 * 124.91695 * 239.97585 * 5 2 1 26 26 H 1.09000 * 109.46425 * 299.99763 * 1 2 3 27 27 H 1.08997 * 109.46913 * 59.99594 * 1 2 3 28 28 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46996 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46991 * 300.00289 * 3 2 1 31 31 H 1.08999 * 109.46682 * 60.00532 * 3 2 1 32 32 H 1.09000 * 109.47221 * 300.00175 * 4 2 1 33 33 H 1.09005 * 109.46997 * 59.99672 * 4 2 1 34 34 H 1.09000 * 109.47541 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.47344 * 144.73266 * 8 7 6 36 36 H 1.08998 * 109.46992 * 24.73189 * 8 7 6 37 37 H 1.09001 * 109.46840 * 59.99792 * 12 11 9 38 38 H 1.09000 * 109.47129 * 299.99899 * 12 11 9 39 39 H 0.96998 * 120.00543 * 180.02562 * 17 16 14 40 40 H 1.08998 * 117.50651 * 215.00344 * 22 13 12 41 41 H 1.09007 * 117.49575 * 0.02562 * 22 13 12 42 42 H 1.09004 * 117.50100 * 359.97438 * 23 13 12 43 43 H 1.09000 * 117.49932 * 144.97481 * 23 13 12 44 44 H 1.07997 * 126.03561 * 180.26920 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7841 -1.9418 1.5253 7 6 2.2989 -2.4068 2.6457 8 6 2.0852 -3.8228 3.1151 9 6 0.9276 -3.8632 4.0791 10 8 0.3364 -2.8464 4.3562 11 8 0.5525 -5.0287 4.6292 12 6 -0.5709 -4.9926 5.5484 13 6 -0.8496 -6.4040 6.0689 14 6 -1.3104 -7.3989 5.0351 15 1 -0.5948 -8.0513 4.5568 16 6 -2.6463 -7.4800 4.7038 17 7 -3.4997 -6.6078 5.1944 18 14 -3.2443 -8.8289 3.5581 19 1 -2.9412 -10.1548 4.1540 20 1 -4.7105 -8.6981 3.3623 21 1 -2.5565 -8.7062 2.2476 22 6 0.0314 -6.9242 7.2065 23 6 -1.4234 -6.5357 7.4811 24 6 3.0309 -1.5215 3.3287 25 16 3.0200 -0.0036 2.4339 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.9861 -4.1801 3.6141 36 1 1.8671 -4.4605 2.2585 37 1 -1.4527 -4.6162 5.0298 38 1 -0.3342 -4.3362 6.3859 39 1 -4.4396 -6.6651 4.9616 40 1 0.2778 -7.9860 7.2071 41 1 0.8094 -6.2607 7.5843 42 1 -1.6020 -5.6167 8.0395 43 1 -2.1346 -7.3416 7.6622 44 1 3.5392 -1.7041 4.2639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174744093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:43 Heat of formation + Delta-G solvation = -50.818828 kcal Electronic energy + Delta-G solvation = -24751.484883 eV Core-core repulsion = 21181.513739 eV Total energy + Delta-G solvation = -3569.971143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69690 -40.76331 -38.63644 -37.76621 -36.91169 -34.04318 -32.97369 -29.73982 -28.38616 -28.33561 -28.20598 -27.27186 -25.97579 -23.08189 -22.57002 -21.21326 -20.80862 -20.29883 -18.74877 -18.50015 -18.33757 -17.37183 -17.08190 -16.67477 -16.50396 -15.84901 -15.57169 -15.13987 -15.02869 -14.97223 -14.47747 -14.28372 -14.15411 -13.78392 -13.53474 -13.37615 -13.11028 -13.00862 -12.93244 -12.81366 -12.63812 -12.46002 -12.43117 -12.29029 -12.10157 -11.99518 -11.91204 -11.73349 -11.69056 -11.40747 -10.80080 -10.57729 -10.50876 -10.33664 -10.10860 -9.73867 -8.15600 -6.27051 -0.28271 0.40678 0.72152 1.21634 1.41344 1.41885 1.44569 1.49956 2.13778 2.41170 2.95491 3.13493 3.42131 3.57647 3.81970 3.92685 3.94056 4.07068 4.12407 4.19103 4.35334 4.36774 4.42757 4.45965 4.62831 4.64490 4.71137 4.73591 4.81032 4.81601 4.93588 4.95104 4.95345 4.96470 5.07432 5.16718 5.24173 5.32885 5.39370 5.44192 5.57006 5.68564 5.73127 6.33841 6.77276 6.78259 6.80903 7.41942 8.93113 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002979 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.805117 B = 9396.082305 C =10395.416390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 C -0.150 4.150 4 C -0.129 4.129 5 C 0.046 3.954 6 N -0.495 5.495 7 C 0.059 3.941 8 C -0.032 4.032 9 C 0.456 3.544 10 O -0.548 6.548 11 O -0.345 6.345 12 C 0.131 3.869 13 C 0.004 3.996 14 C -0.507 4.507 15 H 0.057 0.943 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.952 3.048 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.174 4.174 23 C -0.148 4.148 24 C -0.255 4.255 25 S 0.171 5.829 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.034 0.966 38 H 0.048 0.952 39 H 0.261 0.739 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.879 15.459 -9.543 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.003 3.997 3 C -0.208 4.208 4 C -0.188 4.188 5 C -0.232 4.232 6 N -0.209 5.209 7 C -0.072 4.072 8 C -0.072 4.072 9 C 0.300 3.700 10 O -0.439 6.439 11 O -0.260 6.260 12 C 0.057 3.943 13 C 0.003 3.997 14 C -0.545 4.545 15 H 0.075 0.925 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.211 4.211 23 C -0.186 4.186 24 C -0.394 4.394 25 S 0.428 5.572 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.175 0.825 36 H 0.144 0.856 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 15.625 16.465 -9.608 24.649 hybrid contribution -1.313 -1.635 0.183 2.105 sum 14.312 14.830 -9.425 22.663 Atomic orbital electron populations 1.21839 0.92905 1.01758 1.02772 1.19430 0.96124 0.95283 0.88866 1.22027 1.02098 0.92450 1.04180 1.21806 1.01306 1.00091 0.95575 1.27582 1.00729 0.92791 1.02078 1.65889 1.23120 1.13757 1.18127 1.19551 0.98465 0.97359 0.91847 1.19872 0.96207 0.93099 0.98012 1.24211 0.84892 0.81133 0.79777 1.90606 1.55714 1.36448 1.61147 1.86510 1.48706 1.34352 1.56456 1.22480 0.84495 0.98202 0.89106 1.18857 1.00653 0.91375 0.88785 1.20641 0.92630 1.18678 1.22505 0.92491 1.25744 0.97024 0.97698 0.97355 1.70102 1.03243 1.35912 1.45539 0.85704 0.76975 0.80125 0.79446 1.19082 1.21063 1.19843 1.23021 0.92688 1.01088 1.04341 1.22487 0.95658 1.01138 0.99302 1.27172 1.08695 0.96660 1.06890 1.83481 1.46167 1.12997 1.14519 0.93484 0.89064 0.94120 0.90939 0.88554 0.92028 0.93568 0.89424 0.91944 0.82474 0.85591 0.94732 0.93357 0.93034 0.89439 0.88892 0.90512 0.91152 0.78690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.45 71.98 0.61 -2.14 16 2 C 0.01 0.13 0.99 -52.93 -0.05 0.07 16 3 C -0.15 -1.80 7.54 71.98 0.54 -1.26 16 4 C -0.13 -2.09 8.45 71.98 0.61 -1.49 16 5 C 0.05 1.14 5.78 88.52 0.51 1.65 16 6 N -0.49 -15.14 10.51 -179.39 -1.89 -17.03 16 7 C 0.06 1.72 5.23 41.52 0.22 1.94 16 8 C -0.03 -0.92 6.22 29.10 0.18 -0.74 16 9 C 0.46 18.07 7.95 71.24 0.57 18.64 16 10 O -0.55 -25.11 15.78 21.94 0.35 -24.76 16 11 O -0.34 -15.43 10.16 -51.40 -0.52 -15.95 16 12 C 0.13 6.47 5.29 71.98 0.38 6.85 16 13 C 0.00 0.19 1.61 -52.93 -0.08 0.10 16 14 C -0.51 -28.21 8.77 25.60 0.22 -27.99 16 15 H 0.06 3.15 7.82 -2.91 -0.02 3.12 16 16 C 0.02 1.23 5.39 84.65 0.46 1.69 16 17 N -0.91 -53.22 12.93 21.45 0.28 -52.95 16 18 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 C -0.17 -7.34 9.96 30.62 0.30 -7.03 16 23 C -0.15 -6.92 9.43 30.62 0.29 -6.63 16 24 C -0.25 -6.11 11.14 66.78 0.74 -5.37 16 25 S 0.17 3.44 21.57 -56.49 -1.22 2.22 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 0.75 7.92 -2.39 -0.02 0.73 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.78 7.92 -2.39 -0.02 0.76 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.16 3.16 8.14 -2.39 -0.02 3.15 16 36 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.03 1.95 8.13 -2.39 -0.02 1.93 16 38 H 0.05 2.23 8.09 -2.39 -0.02 2.21 16 39 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 42 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 43 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.20 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -71.18 386.11 5.49 -65.69 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.97 Total: 18.38 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 5.50 Total: -21.70 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.61 Total: -69.97 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.18 Total: -40.71 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.22 Total: 2.22 kcal Total: -71.18 5.49 -65.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174744093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.870 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds