Wall clock time and date at job start Tue Mar 31 2020 14:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99572 * 2 1 3 5 5 C 1.53000 * 109.47286 * 65.00113 * 4 2 1 6 6 O 1.42898 * 109.47049 * 180.02562 * 5 4 2 7 7 C 1.35976 * 117.00141 * 180.02562 * 6 5 4 8 8 C 1.38722 * 119.97959 * 359.72355 * 7 6 5 9 9 C 1.38084 * 120.01259 * 179.72650 * 8 7 6 10 10 C 1.38857 * 119.98582 * 0.56945 * 9 8 7 11 11 N 1.40101 * 120.01619 * 179.67979 * 10 9 8 12 12 C 1.34772 * 119.99957 * 213.31814 * 11 10 9 13 13 O 1.21297 * 120.00142 * 5.28477 * 12 11 10 14 14 C 1.50705 * 119.99968 * 185.27445 * 12 11 10 15 15 S 1.81003 * 109.47032 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99853 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00139 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99807 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99914 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47330 * 59.99758 * 20 18 16 22 22 H 1.48503 * 109.46951 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46858 * 299.99525 * 20 18 16 24 24 C 1.38847 * 119.96328 * 359.70661 * 10 9 8 25 25 C 1.38080 * 119.98959 * 359.97438 * 24 10 9 26 26 H 1.08999 * 109.46568 * 60.00802 * 1 2 3 27 27 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47643 * 300.00756 * 1 2 3 29 29 H 1.08999 * 109.47643 * 239.99244 * 2 1 3 30 30 H 1.09004 * 109.47116 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46690 * 299.99615 * 3 2 1 32 32 H 1.08999 * 109.47511 * 59.99163 * 3 2 1 33 33 H 1.09010 * 109.47256 * 305.00028 * 4 2 1 34 34 H 1.09003 * 109.47516 * 185.00252 * 4 2 1 35 35 H 1.08993 * 109.47044 * 59.99986 * 5 4 2 36 36 H 1.09001 * 109.47190 * 299.99996 * 5 4 2 37 37 H 1.08001 * 119.99718 * 359.97438 * 8 7 6 38 38 H 1.08001 * 120.01483 * 180.27275 * 9 8 7 39 39 H 0.97002 * 120.00161 * 33.32279 * 11 10 9 40 40 H 1.08994 * 109.47525 * 300.00387 * 14 12 11 41 41 H 1.09001 * 109.46708 * 60.00722 * 14 12 11 42 42 H 0.96997 * 119.99970 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.00097 * 179.97438 * 24 10 9 44 44 H 1.08002 * 119.99272 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1882 6 8 2.1110 -2.8688 2.3553 7 6 1.8344 -4.1961 2.4581 8 6 1.1149 -4.8338 1.4580 9 6 0.8386 -6.1829 1.5589 10 6 1.2708 -6.8988 2.6674 11 7 0.9850 -8.2662 2.7737 12 6 0.7651 -8.8166 3.9841 13 8 0.7196 -8.1130 4.9711 14 6 0.5756 -10.3063 4.1113 15 16 0.3014 -10.7334 5.8487 16 6 0.1173 -12.4801 5.7089 17 1 0.1870 -12.9548 4.7414 18 6 -0.1186 -13.2460 6.8423 19 7 -0.2041 -12.6674 8.0215 20 14 -0.3145 -15.0978 6.6940 21 1 0.9230 -15.6819 6.1174 22 1 -0.5556 -15.6793 8.0390 23 1 -1.4661 -15.4043 5.8080 24 6 1.9859 -6.2586 3.6707 25 6 2.2673 -4.9109 3.5653 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1371 34 1 3.1263 -0.6443 1.2954 35 1 2.0698 -2.6549 0.3006 36 1 0.5489 -2.2723 1.1422 37 1 0.7743 -4.2758 0.5983 38 1 0.2823 -6.6803 0.7782 39 1 0.9454 -8.8169 1.9761 40 1 -0.2874 -10.6145 3.5212 41 1 1.4663 -10.8182 3.7471 42 1 -0.3685 -13.2026 8.8135 43 1 2.3221 -6.8147 4.5334 44 1 2.8239 -4.4129 4.3455 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175279335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:44 Heat of formation + Delta-G solvation = -67.445068 kcal Electronic energy + Delta-G solvation = -23260.914187 eV Core-core repulsion = 19690.222076 eV Total energy + Delta-G solvation = -3570.692111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55165 -39.51792 -37.65735 -36.57766 -34.18670 -32.45720 -31.21018 -30.53916 -29.70326 -27.72383 -27.55733 -25.50727 -24.47692 -22.61395 -22.22274 -20.49488 -20.17237 -18.36030 -17.98705 -17.30566 -16.58156 -16.48904 -15.85783 -15.27077 -15.12822 -14.82926 -14.57470 -14.42025 -14.10995 -13.98372 -13.53617 -13.42555 -13.36609 -12.89490 -12.85707 -12.62905 -12.51704 -12.43864 -12.11532 -11.97396 -11.40913 -11.30573 -11.24679 -11.07711 -11.05679 -11.00832 -10.80841 -10.76362 -9.88076 -9.83759 -9.50990 -9.08457 -9.00476 -8.29636 -7.68837 -6.54383 -6.24311 -3.95799 1.28776 1.33721 2.90208 2.92677 3.01269 3.22104 3.25862 3.28770 3.62112 3.79380 4.17382 4.34458 4.35135 4.47472 4.67744 4.73164 4.77887 4.92373 4.96503 5.00676 5.10980 5.15315 5.17999 5.23999 5.33103 5.35670 5.40941 5.50211 5.52902 5.53599 5.65640 5.70124 5.79650 5.83177 5.87975 5.93743 5.95980 6.06305 6.23158 6.35185 6.51548 6.90292 7.33325 7.53385 7.56905 8.32112 8.42975 9.20890 10.83044 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.050894 B = 0.001711 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.030478 B =16357.466289 C =16562.913120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.058 3.942 6 O -0.317 6.317 7 C 0.107 3.893 8 C -0.190 4.190 9 C -0.112 4.112 10 C 0.123 3.877 11 N -0.680 5.680 12 C 0.531 3.469 13 O -0.498 6.498 14 C -0.154 4.154 15 S -0.056 6.056 16 C -0.538 4.538 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C -0.082 4.082 25 C -0.129 4.129 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.408 0.592 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.269 0.731 43 H 0.145 0.855 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 22.624 -19.484 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.017 4.017 6 O -0.231 6.231 7 C 0.062 3.938 8 C -0.209 4.209 9 C -0.133 4.133 10 C 0.029 3.971 11 N -0.327 5.327 12 C 0.318 3.682 13 O -0.370 6.370 14 C -0.305 4.305 15 S 0.170 5.830 16 C -0.686 4.686 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.102 4.102 25 C -0.148 4.148 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.244 0.756 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.163 0.837 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.056 23.831 -17.466 29.823 hybrid contribution -0.319 -2.395 -1.880 3.061 sum 3.737 21.436 -19.346 29.116 Atomic orbital electron populations 1.21952 0.94989 1.02039 1.02135 1.21044 0.96111 0.96475 0.97593 1.21824 1.01118 0.95457 1.02028 1.21615 1.02195 0.92486 0.98955 1.22859 0.99072 0.92813 0.86962 1.86051 1.74760 1.19282 1.43049 1.18922 0.96964 0.82871 0.95086 1.20940 1.04518 0.95298 1.00151 1.20651 1.00658 0.93443 0.98518 1.17704 0.98600 0.84316 0.96516 1.43655 1.71603 1.07278 1.10148 1.20523 0.75039 0.90420 0.82209 1.90720 1.46929 1.62783 1.36569 1.23545 1.05150 0.92857 1.08898 1.85419 1.93654 1.07342 0.96576 1.22821 1.57382 0.91870 0.96547 0.90896 1.24990 0.94516 0.99535 0.94448 1.70001 1.45622 1.36284 0.98305 0.86216 0.78822 0.82888 0.77531 1.19914 1.20779 1.19923 1.21090 0.95960 0.93918 0.99217 1.20327 1.03764 0.93406 0.97343 0.92488 0.92455 0.92344 0.90950 0.92500 0.92457 0.92453 0.90699 0.90776 0.92261 0.91915 0.85496 0.85546 0.75616 0.88915 0.88768 0.92067 0.83730 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.95 37.16 0.33 -0.44 16 2 C -0.09 -0.48 2.92 -90.62 -0.26 -0.74 16 3 C -0.15 -0.67 9.19 37.16 0.34 -0.33 16 4 C -0.11 -0.74 5.05 -26.73 -0.14 -0.88 16 5 C 0.06 0.46 4.50 37.16 0.17 0.63 16 6 O -0.32 -3.61 10.14 -19.67 -0.20 -3.80 16 7 C 0.11 1.32 6.69 -39.23 -0.26 1.06 16 8 C -0.19 -2.07 9.03 -39.46 -0.36 -2.42 16 9 C -0.11 -1.28 9.96 -39.41 -0.39 -1.67 16 10 C 0.12 1.72 6.28 -83.62 -0.53 1.19 16 11 N -0.68 -9.40 5.35 -9.83 -0.05 -9.46 16 12 C 0.53 9.73 7.59 -10.99 -0.08 9.64 16 13 O -0.50 -10.98 13.55 5.54 0.08 -10.91 16 14 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 15 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 16 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 20 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.08 -1.23 8.65 -39.41 -0.34 -1.57 16 25 C -0.13 -1.73 9.98 -39.46 -0.39 -2.13 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 36 H 0.06 0.46 6.07 -51.93 -0.32 0.15 16 37 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.41 4.16 8.82 -40.82 -0.36 3.80 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.15 2.42 6.41 -52.48 -0.34 2.09 16 44 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -33.77 379.11 -9.16 -42.92 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.70 Total: 1.53 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.49 Total: -13.25 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.68 Total: -34.65 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.12 Total: -14.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.77 -9.16 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175279335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.520 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds