Wall clock time and date at job start Tue Mar 31 2020 14:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 C 1.52998 * 109.47089 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.42898 * 113.99686 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47171 * 179.97438 * 6 5 4 8 8 N 1.46492 * 109.47018 * 64.99880 * 7 6 5 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.10534 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.04191 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67598 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47166 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46857 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.46876 * 239.99864 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08997 * 109.47194 * 300.00310 * 1 2 3 27 27 H 1.09003 * 109.46705 * 59.99786 * 1 2 3 28 28 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47194 * 239.99690 * 2 1 3 30 30 H 1.09003 * 109.46705 * 120.00214 * 2 1 3 31 31 H 1.09005 * 109.47056 * 59.99784 * 3 2 1 32 32 H 1.08995 * 109.46983 * 300.00061 * 3 2 1 33 33 H 1.09005 * 109.47075 * 60.00130 * 4 3 2 34 34 H 1.09003 * 109.46990 * 300.00374 * 4 3 2 35 35 H 1.09005 * 109.47443 * 59.99954 * 6 5 4 36 36 H 1.09006 * 109.47624 * 300.00095 * 6 5 4 37 37 H 1.09005 * 109.46655 * 304.99889 * 7 6 5 38 38 H 1.09002 * 109.47164 * 184.99820 * 7 6 5 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 40 40 H 1.08002 * 119.98248 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31471 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4709 2.9025 0.0013 7 6 5.8655 4.3808 0.0013 8 7 5.4274 5.0031 1.2530 9 6 5.6681 6.3104 1.4761 10 8 6.2491 6.9728 0.6388 11 6 5.2253 6.9386 2.7393 12 6 4.5571 6.1796 3.7026 13 6 4.1439 6.7675 4.8812 14 6 4.3947 8.1058 5.1165 15 6 5.0547 8.8731 4.1612 16 16 5.3648 10.5811 4.4629 17 6 3.9652 11.2922 3.6628 18 1 3.1961 10.6548 3.2524 19 6 3.8512 12.6710 3.5602 20 7 4.7883 13.4479 4.0609 21 14 2.3670 13.4249 2.7126 22 1 1.4647 12.3442 2.2404 23 1 1.6389 14.2950 3.6707 24 1 2.8179 14.2348 1.5525 25 6 5.4736 8.2903 2.9723 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8909 35 1 5.8737 2.4193 -0.8889 36 1 5.8737 2.4185 0.8911 37 1 5.3897 4.8838 -0.8406 38 1 6.9483 4.4678 -0.0882 39 1 4.9634 4.4746 1.9211 40 1 4.3635 5.1319 3.5253 41 1 3.6271 6.1782 5.6241 42 1 4.0734 8.5590 6.0428 43 1 4.7087 14.4120 3.9888 44 1 5.9897 8.8821 2.2308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176032755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:03 Heat of formation + Delta-G solvation = -103.243680 kcal Electronic energy + Delta-G solvation = -23488.021194 eV Core-core repulsion = 19915.776738 eV Total energy + Delta-G solvation = -3572.244456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23428 -39.42446 -38.93874 -36.37594 -35.41986 -34.66175 -32.61977 -31.93302 -30.75226 -29.23727 -27.75240 -25.22038 -24.20742 -23.83442 -23.11329 -21.91042 -21.70262 -20.02373 -19.02232 -17.78203 -17.62584 -17.09681 -16.94431 -16.85812 -16.60278 -16.19407 -15.80521 -15.52593 -15.48083 -15.06253 -14.66602 -14.59817 -14.38774 -13.93771 -13.75191 -13.57461 -13.27363 -13.23556 -13.06058 -12.98770 -12.66018 -12.45614 -12.38086 -12.26510 -11.88997 -11.81014 -11.74014 -11.51021 -11.27275 -11.15364 -10.76563 -10.55364 -10.29141 -9.89870 -9.70013 -8.80872 -8.40127 -6.19907 -0.18500 0.25192 1.28983 1.35699 1.45827 1.64918 1.78698 2.08394 2.23800 2.62997 2.80384 2.92728 3.41076 3.66492 3.84862 3.94696 4.02029 4.02866 4.13889 4.18778 4.23860 4.36002 4.42676 4.46538 4.48802 4.53174 4.63008 4.67400 4.71792 4.84794 4.92309 4.94484 4.97252 5.06108 5.22136 5.26139 5.30700 5.34107 5.36903 5.38135 5.45956 5.50180 5.86063 6.15288 6.25598 6.45081 7.00295 7.12410 8.67147 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002329 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.345283 B =12021.385500 C =12587.014340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.059 3.941 5 O -0.411 6.411 6 C 0.058 3.942 7 C 0.118 3.882 8 N -0.703 5.703 9 C 0.560 3.440 10 O -0.584 6.584 11 C -0.157 4.157 12 C -0.063 4.063 13 C -0.120 4.120 14 C -0.062 4.062 15 C -0.130 4.130 16 S -0.094 6.094 17 C -0.535 4.535 18 H 0.066 0.934 19 C 0.018 3.982 20 N -0.905 5.905 21 Si 0.993 3.007 22 H -0.267 1.267 23 H -0.264 1.264 24 H -0.272 1.272 25 C -0.045 4.045 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.171 0.829 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 -31.685 -4.875 32.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.158 4.158 4 C -0.017 4.017 5 O -0.331 6.331 6 C -0.019 4.019 7 C -0.006 4.006 8 N -0.356 5.356 9 C 0.348 3.652 10 O -0.466 6.466 11 C -0.162 4.162 12 C -0.081 4.081 13 C -0.140 4.140 14 C -0.083 4.083 15 C -0.241 4.241 16 S 0.141 5.859 17 C -0.683 4.683 18 H 0.084 0.916 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.815 3.185 22 H -0.191 1.191 23 H -0.189 1.189 24 H -0.197 1.197 25 C -0.067 4.067 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.254 0.746 40 H 0.188 0.812 41 H 0.194 0.806 42 H 0.154 0.846 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.544 -30.353 -4.889 30.948 hybrid contribution -1.402 0.274 -1.009 1.749 sum -4.945 -30.080 -5.898 31.049 Atomic orbital electron populations 1.21784 0.95553 1.02134 1.01810 1.21418 0.96161 0.95100 1.02832 1.21565 0.93690 0.97981 1.02606 1.22661 0.95011 0.82667 1.01340 1.87917 1.21415 1.28060 1.95712 1.22777 0.81582 0.94131 1.03399 1.21532 1.00343 0.92655 0.86038 1.45655 1.59676 1.08839 1.21456 1.18408 0.78260 0.82488 0.86018 1.90752 1.43997 1.63974 1.47843 1.19965 1.05777 0.94185 0.96292 1.21692 0.93912 1.00537 0.91984 1.21553 1.00315 0.93788 0.98310 1.22077 0.93300 0.94792 0.98138 1.22512 1.03686 1.00416 0.97531 1.83452 1.36482 0.92981 1.72970 1.23090 1.06937 0.94518 1.43712 0.91583 1.26020 1.00523 0.96345 0.95789 1.70111 1.34707 1.05210 1.44145 0.84989 0.77314 0.78110 0.78115 1.19129 1.18891 1.19743 1.21632 0.95494 0.94185 0.95430 0.92824 0.93055 0.91843 0.91301 0.90980 0.91770 0.92380 0.92363 0.91745 0.89540 0.90263 0.92402 0.89290 0.74567 0.81199 0.80630 0.84587 0.91678 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.12 -0.94 5.93 30.60 0.18 -0.75 16 3 C -0.12 -1.35 5.58 30.59 0.17 -1.17 16 4 C 0.06 0.60 5.94 71.98 0.43 1.03 16 5 O -0.41 -6.27 10.29 -148.98 -1.53 -7.81 16 6 C 0.06 0.65 6.07 71.98 0.44 1.09 16 7 C 0.12 2.19 6.06 86.38 0.52 2.71 16 8 N -0.70 -15.49 5.45 -465.95 -2.54 -18.03 16 9 C 0.56 18.51 7.77 86.79 0.67 19.18 16 10 O -0.58 -24.75 16.34 -3.88 -0.06 -24.81 16 11 C -0.16 -5.34 5.87 -20.11 -0.12 -5.46 16 12 C -0.06 -1.51 9.54 22.57 0.22 -1.30 16 13 C -0.12 -3.00 10.02 22.21 0.22 -2.78 16 14 C -0.06 -2.20 9.79 22.48 0.22 -1.98 16 15 C -0.13 -5.90 5.45 22.65 0.12 -5.77 16 16 S -0.09 -5.21 21.40 -56.49 -1.21 -6.42 16 17 C -0.54 -32.06 9.46 67.94 0.64 -31.41 16 18 H 0.07 3.94 7.79 -2.91 -0.02 3.91 16 19 C 0.02 1.08 5.49 84.84 0.47 1.54 16 20 N -0.91 -55.32 13.22 21.64 0.29 -55.03 16 21 Si 0.99 45.52 29.55 68.60 2.03 47.54 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 C -0.05 -2.00 9.34 22.70 0.21 -1.78 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.42 6.50 6.50 -92.71 -0.60 5.89 16 40 H 0.17 2.32 6.40 -2.91 -0.02 2.31 16 41 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 44 H 0.10 5.11 7.65 -2.91 -0.02 5.09 16 Total: -1.00 -79.93 388.44 2.46 -77.46 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.38 Total: 14.60 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 5.11 Total: -27.50 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.25 Total: -73.06 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.60 Total: -32.62 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.21 Total: -6.42 kcal Total: -79.93 2.46 -77.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176032755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.781 kcal (2) G-P(sol) polarization free energy of solvation -79.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds