Wall clock time and date at job start Tue Mar 31 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 C 1.52996 * 109.47325 * 119.99941 * 2 1 3 5 5 O 1.45195 * 109.47415 * 174.99835 * 4 2 1 6 6 C 1.34227 * 117.00069 * 180.02562 * 5 4 2 7 7 O 1.20828 * 120.00376 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99881 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46824 * 179.97438 * 8 6 5 10 10 C 1.40000 * 119.99414 * 179.97438 * 9 8 6 11 11 C 1.38641 * 120.10373 * 0.02562 * 10 9 8 12 12 C 1.38284 * 120.00818 * 179.97438 * 11 10 9 13 13 C 1.38275 * 120.20418 * 359.97438 * 12 11 10 14 14 C 1.38247 * 120.19312 * 0.02562 * 13 12 11 15 15 C 1.38724 * 119.99820 * 0.02562 * 14 13 12 16 16 S 1.76201 * 120.10569 * 179.97438 * 15 14 13 17 17 C 1.81406 * 102.99596 * 359.97438 * 16 15 14 18 18 C 1.50701 * 109.47044 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99746 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00074 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47522 * 60.00238 * 22 20 18 24 24 H 1.48503 * 109.47464 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47248 * 299.99972 * 22 20 18 26 26 H 1.09005 * 109.46748 * 299.99985 * 1 2 3 27 27 H 1.08995 * 109.47057 * 59.99692 * 1 2 3 28 28 H 1.08996 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46748 * 240.00015 * 2 1 3 30 30 H 1.09005 * 109.46688 * 300.00363 * 3 2 1 31 31 H 1.08993 * 109.47192 * 59.99860 * 3 2 1 32 32 H 1.08997 * 109.47346 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47069 * 54.99586 * 4 2 1 34 34 H 1.09001 * 109.47157 * 294.99922 * 4 2 1 35 35 H 1.08999 * 109.46845 * 60.00207 * 8 6 5 36 36 H 1.08999 * 109.47083 * 299.99845 * 8 6 5 37 37 H 0.97001 * 120.00343 * 0.02562 * 9 8 6 38 38 H 1.07997 * 119.99368 * 359.95163 * 11 10 9 39 39 H 1.08004 * 119.90252 * 180.02562 * 12 11 10 40 40 H 1.07996 * 119.90390 * 179.74422 * 13 12 11 41 41 H 1.08007 * 120.00130 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.47274 * 300.00167 * 17 16 15 43 43 H 1.09004 * 109.46798 * 60.00268 * 17 16 15 44 44 H 0.97006 * 119.99920 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 3.4871 -0.8254 1.1910 6 6 4.0958 -1.4373 2.2191 7 8 3.4412 -1.8710 3.1374 8 6 5.5959 -1.5823 2.2284 9 7 6.0115 -2.2790 3.4483 10 6 7.3684 -2.5322 3.6820 11 6 8.3206 -2.1241 2.7606 12 6 9.6605 -2.3747 2.9936 13 6 10.0554 -3.0316 4.1444 14 6 9.1130 -3.4423 5.0688 15 6 7.7666 -3.1960 4.8429 16 16 6.5630 -3.7188 6.0188 17 6 7.5673 -4.5072 7.3074 18 6 6.6677 -5.0162 8.4042 19 1 5.5988 -4.8786 8.3333 20 6 7.2093 -5.6564 9.4986 21 7 8.5110 -5.8225 9.5856 22 14 6.0943 -6.2866 10.8583 23 1 5.1418 -7.2783 10.2977 24 1 6.9164 -6.9310 11.9139 25 1 5.3383 -5.1508 11.4449 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1369 35 1 6.0565 -0.5948 2.1996 36 1 5.9109 -2.1558 1.3567 37 1 5.3465 -2.5655 4.0938 38 1 8.0159 -1.6107 1.8607 39 1 10.4009 -2.0556 2.2749 40 1 11.1027 -3.2285 4.3195 41 1 9.4250 -3.9548 5.9669 42 1 8.1219 -5.3409 6.8767 43 1 8.2667 -3.7795 7.7190 44 1 8.8921 -6.2726 10.3558 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182738503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:45 Heat of formation + Delta-G solvation = -78.350338 kcal Electronic energy + Delta-G solvation = -23735.793768 eV Core-core repulsion = 20164.628769 eV Total energy + Delta-G solvation = -3571.164999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82664 -38.97308 -37.48754 -35.47152 -35.15698 -33.20389 -30.79028 -30.16451 -28.52241 -27.69200 -27.60606 -26.09978 -23.28519 -22.69399 -21.63710 -20.79781 -20.65720 -18.40577 -17.42598 -17.06824 -16.87791 -16.25619 -15.93799 -15.68311 -15.23730 -14.75870 -14.37055 -14.34164 -14.10942 -13.75024 -13.56987 -13.27442 -13.05313 -12.90928 -12.71775 -12.66553 -12.53087 -12.31493 -12.11503 -11.65461 -11.57776 -11.55650 -11.19501 -10.95696 -10.88921 -10.84130 -10.73385 -10.69053 -10.01076 -9.95658 -9.64695 -9.14443 -9.00650 -8.59079 -7.56581 -6.34033 -6.22438 -4.27502 1.70349 1.89201 1.94714 2.15266 2.57258 3.27380 3.30376 3.34851 3.51241 3.82454 4.16798 4.18858 4.33479 4.36197 4.40276 4.69049 4.98213 4.98700 5.04628 5.07089 5.12203 5.14934 5.20111 5.21433 5.36331 5.40832 5.46505 5.59315 5.60903 5.78411 5.83514 5.85882 5.97438 6.11306 6.26181 6.47296 6.68556 6.94943 7.02544 7.04983 7.09570 7.40663 7.50811 7.70950 7.87760 7.95274 8.73353 9.35950 10.88768 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.002670 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.970175 B =10482.659685 C =12599.637092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.070 3.930 5 O -0.354 6.354 6 C 0.456 3.544 7 O -0.493 6.493 8 C 0.139 3.861 9 N -0.741 5.741 10 C 0.222 3.778 11 C -0.189 4.189 12 C -0.095 4.095 13 C -0.154 4.154 14 C -0.089 4.089 15 C -0.131 4.131 16 S -0.173 6.173 17 C 0.078 3.922 18 C -0.518 4.518 19 H 0.067 0.933 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.416 0.584 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.132 0.868 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 12.506 -21.279 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.004 4.004 5 O -0.270 6.270 6 C 0.298 3.702 7 O -0.380 6.380 8 C 0.013 3.987 9 N -0.379 5.379 10 C 0.115 3.885 11 C -0.213 4.213 12 C -0.116 4.116 13 C -0.176 4.176 14 C -0.114 4.114 15 C -0.248 4.248 16 S 0.072 5.928 17 C -0.069 4.069 18 C -0.557 4.557 19 H 0.085 0.915 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.257 0.743 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.777 12.477 -20.971 25.932 hybrid contribution 0.537 -0.652 1.092 1.381 sum -8.239 11.825 -19.879 24.554 Atomic orbital electron populations 1.21789 0.93592 1.02432 1.02640 1.21168 0.96001 0.97019 0.97209 1.21846 1.01951 0.94890 1.01912 1.23234 0.76130 1.01522 0.99511 1.86431 1.24071 1.71315 1.45217 1.23609 0.91873 0.74753 0.79951 1.90732 1.66577 1.44864 1.35780 1.20526 0.86903 1.00179 0.91084 1.44436 1.05320 1.65235 1.22891 1.17169 0.83194 0.95242 0.92885 1.20435 0.92750 1.08132 1.00017 1.20758 0.94843 0.98850 0.97188 1.20836 0.98952 1.02491 0.95304 1.21197 0.91126 0.99218 0.99893 1.21517 0.97864 1.06583 0.98788 1.85150 1.15970 1.71332 1.20307 1.21320 0.96368 0.97359 0.91878 1.20597 0.93499 1.38388 1.03232 0.91461 1.24942 0.95356 0.95354 0.98018 1.69936 1.10450 1.41943 1.30430 0.86392 0.80200 0.79214 0.80744 1.19863 1.20993 1.19868 0.92189 0.91565 0.92200 0.89900 0.92350 0.92611 0.91767 0.90954 0.90920 0.88141 0.88136 0.74329 0.86375 0.86540 0.86506 0.85054 0.93871 0.93870 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 2 C -0.10 -0.61 3.16 -90.62 -0.29 -0.89 16 3 C -0.15 -0.90 9.09 37.16 0.34 -0.56 16 4 C 0.07 0.61 4.84 37.16 0.18 0.79 16 5 O -0.35 -3.55 9.76 -39.25 -0.38 -3.93 16 6 C 0.46 5.53 8.03 36.01 0.29 5.82 16 7 O -0.49 -7.76 15.42 -18.75 -0.29 -8.05 16 8 C 0.14 1.51 5.51 -5.19 -0.03 1.48 16 9 N -0.74 -11.38 5.66 -59.62 -0.34 -11.72 16 10 C 0.22 3.70 6.66 -83.49 -0.56 3.15 16 11 C -0.19 -2.61 9.31 -39.42 -0.37 -2.98 16 12 C -0.09 -1.28 10.04 -39.55 -0.40 -1.68 16 13 C -0.15 -2.40 10.04 -39.56 -0.40 -2.80 16 14 C -0.09 -1.68 9.36 -39.40 -0.37 -2.05 16 15 C -0.13 -2.58 6.12 -38.92 -0.24 -2.81 16 16 S -0.17 -3.91 20.37 -107.50 -2.19 -6.09 16 17 C 0.08 2.02 4.09 36.01 0.15 2.17 16 18 C -0.52 -14.62 9.13 -34.44 -0.31 -14.94 16 19 H 0.07 1.89 7.71 -52.48 -0.40 1.49 16 20 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 21 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 22 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.10 0.88 7.95 -51.93 -0.41 0.47 16 36 H 0.10 0.88 7.95 -51.93 -0.41 0.47 16 37 H 0.42 7.35 5.99 -40.82 -0.24 7.11 16 38 H 0.12 1.24 6.74 -52.49 -0.35 0.89 16 39 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.13 2.67 5.88 -52.48 -0.31 2.36 16 42 H 0.04 1.17 7.75 -51.92 -0.40 0.77 16 43 H 0.04 1.17 7.75 -51.92 -0.40 0.77 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -31.31 380.47 -10.22 -41.53 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.71 Total: 5.02 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.76 Total: -13.92 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.40 Total: -36.70 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.67 Total: -11.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.19 Total: -6.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.31 -10.22 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182738503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.821 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds