Wall clock time and date at job start Tue Mar 31 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47201 * 2 1 4 4 C 1.52996 * 109.47325 * 119.99941 * 2 1 3 5 5 O 1.45195 * 109.47415 * 174.99835 * 4 2 1 6 6 C 1.34227 * 117.00069 * 180.02562 * 5 4 2 7 7 O 1.20828 * 120.00376 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99881 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46824 * 179.97438 * 8 6 5 10 10 C 1.40000 * 119.99414 * 179.97438 * 9 8 6 11 11 C 1.38641 * 120.10373 * 0.02562 * 10 9 8 12 12 C 1.38284 * 120.00818 * 179.97438 * 11 10 9 13 13 C 1.38275 * 120.20418 * 359.97438 * 12 11 10 14 14 C 1.38247 * 120.19312 * 0.02562 * 13 12 11 15 15 C 1.38724 * 119.99820 * 0.02562 * 14 13 12 16 16 S 1.76201 * 120.10569 * 179.97438 * 15 14 13 17 17 C 1.81406 * 102.99596 * 359.97438 * 16 15 14 18 18 C 1.50701 * 109.47044 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99746 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00074 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99939 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47522 * 60.00238 * 22 20 18 24 24 H 1.48503 * 109.47464 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47248 * 299.99972 * 22 20 18 26 26 H 1.09005 * 109.46748 * 299.99985 * 1 2 3 27 27 H 1.08995 * 109.47057 * 59.99692 * 1 2 3 28 28 H 1.08996 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46748 * 240.00015 * 2 1 3 30 30 H 1.09005 * 109.46688 * 300.00363 * 3 2 1 31 31 H 1.08993 * 109.47192 * 59.99860 * 3 2 1 32 32 H 1.08997 * 109.47346 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47069 * 54.99586 * 4 2 1 34 34 H 1.09001 * 109.47157 * 294.99922 * 4 2 1 35 35 H 1.08999 * 109.46845 * 60.00207 * 8 6 5 36 36 H 1.08999 * 109.47083 * 299.99845 * 8 6 5 37 37 H 0.97001 * 120.00343 * 0.02562 * 9 8 6 38 38 H 1.07997 * 119.99368 * 359.95163 * 11 10 9 39 39 H 1.08004 * 119.90252 * 180.02562 * 12 11 10 40 40 H 1.07996 * 119.90390 * 179.74422 * 13 12 11 41 41 H 1.08007 * 120.00130 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.47274 * 300.00167 * 17 16 15 43 43 H 1.09004 * 109.46798 * 60.00268 * 17 16 15 44 44 H 0.97006 * 119.99920 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 3.4871 -0.8254 1.1910 6 6 4.0958 -1.4373 2.2191 7 8 3.4412 -1.8710 3.1374 8 6 5.5959 -1.5823 2.2284 9 7 6.0115 -2.2790 3.4483 10 6 7.3684 -2.5322 3.6820 11 6 8.3206 -2.1241 2.7606 12 6 9.6605 -2.3747 2.9936 13 6 10.0554 -3.0316 4.1444 14 6 9.1130 -3.4423 5.0688 15 6 7.7666 -3.1960 4.8429 16 16 6.5630 -3.7188 6.0188 17 6 7.5673 -4.5072 7.3074 18 6 6.6677 -5.0162 8.4042 19 1 5.5988 -4.8786 8.3333 20 6 7.2093 -5.6564 9.4986 21 7 8.5110 -5.8225 9.5856 22 14 6.0943 -6.2866 10.8583 23 1 5.1418 -7.2783 10.2977 24 1 6.9164 -6.9310 11.9139 25 1 5.3383 -5.1508 11.4449 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1369 35 1 6.0565 -0.5948 2.1996 36 1 5.9109 -2.1558 1.3567 37 1 5.3465 -2.5655 4.0938 38 1 8.0159 -1.6107 1.8607 39 1 10.4009 -2.0556 2.2749 40 1 11.1027 -3.2285 4.3195 41 1 9.4250 -3.9548 5.9669 42 1 8.1219 -5.3409 6.8767 43 1 8.2667 -3.7795 7.7190 44 1 8.8921 -6.2726 10.3558 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182738503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:45 Heat of formation + Delta-G solvation = -95.154274 kcal Electronic energy + Delta-G solvation = -23736.522442 eV Core-core repulsion = 20164.628769 eV Total energy + Delta-G solvation = -3571.893673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76264 -40.18132 -38.34233 -36.35722 -36.06401 -35.35534 -32.07053 -31.35352 -30.55549 -28.61729 -28.05072 -26.96587 -25.34927 -23.91744 -22.81502 -21.76790 -21.29914 -19.56612 -18.75102 -18.24007 -17.95887 -17.84002 -17.26401 -16.81986 -16.45304 -15.99404 -15.60082 -15.25876 -15.05693 -14.85685 -14.70509 -14.65363 -14.48602 -14.28364 -14.15261 -13.77880 -13.47804 -13.39155 -13.00543 -12.98630 -12.77049 -12.62567 -12.33413 -12.22612 -12.12919 -11.76804 -11.71241 -11.64755 -11.60682 -11.54132 -11.15180 -10.88743 -10.84642 -10.43071 -8.88208 -8.38046 -7.93464 -6.52707 0.41849 0.66939 0.89000 0.98593 1.32194 1.36997 1.40358 1.49417 1.87661 2.32852 2.51513 2.91834 2.96269 3.45141 3.76098 3.81703 3.95800 4.11154 4.21806 4.25850 4.27152 4.38756 4.45787 4.50088 4.57264 4.60815 4.72517 4.78947 4.84755 4.85741 4.96899 4.99312 5.01174 5.16932 5.19244 5.25748 5.38966 5.42293 5.47760 5.51022 5.70785 5.80857 5.90190 6.30836 6.47742 6.53613 6.60961 7.15554 8.73975 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.002670 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.970175 B =10482.659685 C =12599.637092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.148 4.148 4 C 0.064 3.936 5 O -0.343 6.343 6 C 0.460 3.540 7 O -0.538 6.538 8 C 0.136 3.864 9 N -0.751 5.751 10 C 0.221 3.779 11 C -0.177 4.177 12 C -0.073 4.073 13 C -0.161 4.161 14 C -0.111 4.111 15 C -0.168 4.168 16 S -0.189 6.189 17 C 0.090 3.910 18 C -0.545 4.545 19 H 0.062 0.938 20 C 0.017 3.983 21 N -0.921 5.921 22 Si 0.978 3.022 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.266 1.266 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.402 0.598 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 14.067 -24.255 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.010 4.010 5 O -0.259 6.259 6 C 0.304 3.696 7 O -0.428 6.428 8 C 0.012 3.988 9 N -0.386 5.386 10 C 0.114 3.886 11 C -0.201 4.201 12 C -0.094 4.094 13 C -0.183 4.183 14 C -0.135 4.135 15 C -0.284 4.284 16 S 0.054 5.946 17 C -0.057 4.057 18 C -0.583 4.583 19 H 0.080 0.920 20 C -0.184 4.184 21 N -0.559 5.559 22 Si 0.801 3.199 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.191 1.191 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.183 0.817 39 H 0.182 0.818 40 H 0.155 0.845 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.687 14.071 -24.013 29.157 hybrid contribution 0.570 -1.026 1.804 2.152 sum -8.117 13.046 -22.210 27.006 Atomic orbital electron populations 1.21800 0.92653 1.02664 1.03237 1.21186 0.96678 0.96970 0.95981 1.21848 1.01576 0.94651 1.02464 1.23442 0.75384 1.01519 1.00644 1.86438 1.24809 1.70521 1.44142 1.23938 0.92472 0.73755 0.79467 1.90728 1.67589 1.46922 1.37527 1.20907 0.86006 1.01817 0.90078 1.44626 1.04537 1.65372 1.24047 1.17386 0.84451 0.94545 0.92215 1.20968 0.92087 1.06713 1.00368 1.21315 0.95839 0.95833 0.96379 1.21114 0.99238 1.02519 0.95415 1.21100 0.91917 1.00423 1.00075 1.21479 0.97118 1.10149 0.99698 1.84843 1.16985 1.72069 1.20723 1.20879 0.95992 0.96017 0.92828 1.20933 0.93553 1.39315 1.04545 0.91965 1.25922 0.96944 0.95137 1.00423 1.70050 1.12190 1.42309 1.31333 0.85302 0.78271 0.78797 0.77520 1.19099 1.19730 1.19116 0.92390 0.90169 0.92200 0.89268 0.90950 0.92953 0.92317 0.91528 0.91699 0.84913 0.84887 0.76125 0.81691 0.81796 0.84495 0.88384 0.96408 0.96409 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 71.98 0.66 -0.62 16 2 C -0.09 -0.99 3.16 -10.79 -0.03 -1.02 16 3 C -0.15 -1.51 9.09 71.98 0.65 -0.85 16 4 C 0.06 1.06 4.84 71.98 0.35 1.41 16 5 O -0.34 -6.30 9.76 -51.39 -0.50 -6.80 16 6 C 0.46 10.54 8.03 71.24 0.57 11.11 16 7 O -0.54 -17.17 15.42 21.96 0.34 -16.83 16 8 C 0.14 2.52 5.51 85.64 0.47 2.99 16 9 N -0.75 -22.15 5.66 -342.52 -1.94 -24.08 16 10 C 0.22 7.06 6.66 38.25 0.25 7.31 16 11 C -0.18 -4.09 9.31 22.38 0.21 -3.88 16 12 C -0.07 -1.64 10.04 22.29 0.22 -1.41 16 13 C -0.16 -4.76 10.04 22.28 0.22 -4.53 16 14 C -0.11 -4.35 9.36 22.39 0.21 -4.14 16 15 C -0.17 -6.82 6.12 22.70 0.14 -6.68 16 16 S -0.19 -9.13 20.37 -56.49 -1.15 -10.28 16 17 C 0.09 5.10 4.09 71.24 0.29 5.39 16 18 C -0.54 -32.45 9.13 25.60 0.23 -32.21 16 19 H 0.06 3.68 7.71 -2.91 -0.02 3.65 16 20 C 0.02 1.00 5.46 84.65 0.46 1.46 16 21 N -0.92 -55.31 13.29 21.44 0.28 -55.03 16 22 Si 0.98 44.85 29.54 68.60 2.03 46.87 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.66 7.82 -2.39 -0.02 0.64 16 33 H 0.07 1.18 8.13 -2.38 -0.02 1.17 16 34 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 35 H 0.13 1.68 7.95 -2.39 -0.02 1.66 16 36 H 0.13 1.68 7.95 -2.39 -0.02 1.66 16 37 H 0.40 14.43 5.99 -92.71 -0.56 13.88 16 38 H 0.17 2.28 6.74 -2.91 -0.02 2.26 16 39 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 41 H 0.10 4.41 5.88 -2.91 -0.02 4.39 16 42 H 0.02 1.06 7.75 -2.39 -0.02 1.04 16 43 H 0.02 1.05 7.75 -2.39 -0.02 1.04 16 44 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -73.65 380.47 4.42 -69.23 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.44 Total: 22.58 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.92 Total: -25.67 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.65 Total: -79.11 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.16 Total: -23.63 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.15 Total: -10.28 kcal Total: -73.65 4.42 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182738503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.921 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds