Wall clock time and date at job start Tue Mar 31 2020 14:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46644 * 2 1 4 4 C 1.52998 * 109.46975 * 240.00221 * 2 1 3 5 5 O 1.42897 * 109.47337 * 119.99878 * 2 1 3 6 6 C 1.42901 * 114.00150 * 60.00264 * 5 2 1 7 7 C 1.50694 * 109.47439 * 179.97438 * 6 5 2 8 8 O 1.21297 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.40134 * 120.00068 * 185.53129 * 9 7 6 11 11 C 1.38648 * 120.10201 * 24.81560 * 10 9 7 12 12 C 1.38254 * 120.00935 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.20737 * 359.97261 * 12 11 10 14 14 C 1.38191 * 120.20073 * 0.02728 * 13 12 11 15 15 C 1.38782 * 119.99201 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.10682 * 180.02562 * 15 14 13 17 17 C 1.81399 * 103.00125 * 359.95629 * 16 15 14 18 18 C 1.50695 * 109.47411 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99816 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47243 * 60.00054 * 22 20 18 24 24 H 1.48502 * 109.46645 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47126 * 299.99923 * 22 20 18 26 26 H 1.08998 * 109.47306 * 299.99829 * 1 2 3 27 27 H 1.08999 * 109.47503 * 60.00064 * 1 2 3 28 28 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46758 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47119 * 300.00171 * 3 2 1 31 31 H 1.08998 * 109.47130 * 60.00062 * 3 2 1 32 32 H 1.09003 * 109.47164 * 299.99549 * 4 2 1 33 33 H 1.08998 * 109.47519 * 60.00024 * 4 2 1 34 34 H 1.09004 * 109.46745 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.47030 * 59.99406 * 6 5 2 36 36 H 1.09001 * 109.46783 * 300.00124 * 6 5 2 37 37 H 0.97000 * 119.99717 * 5.52573 * 9 7 6 38 38 H 1.08003 * 119.99520 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.89520 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.89265 * 179.74764 * 13 12 11 41 41 H 1.08006 * 120.00386 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.46737 * 300.00429 * 17 16 15 43 43 H 1.09002 * 109.46929 * 59.99775 * 17 16 15 44 44 H 0.96998 * 119.99750 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.5848 -2.0355 1.2645 7 6 2.1422 -2.6447 2.5251 8 8 2.8330 -1.9783 3.2667 9 7 1.8740 -3.9303 2.8281 10 6 2.2938 -4.4635 4.0541 11 6 2.5051 -3.6277 5.1400 12 6 2.9198 -4.1558 6.3486 13 6 3.1246 -5.5173 6.4795 14 6 2.9166 -6.3582 5.4028 15 6 2.5004 -5.8371 4.1858 16 16 2.2336 -6.9066 2.8112 17 6 2.6306 -8.5435 3.4846 18 6 2.4474 -9.5860 2.4119 19 1 2.1248 -9.2930 1.4237 20 6 2.6916 -10.9136 2.6921 21 7 3.0840 -11.2705 3.8956 22 14 2.4652 -12.2058 1.3622 23 1 3.3696 -11.9073 0.2228 24 1 2.7889 -13.5459 1.9139 25 1 1.0564 -12.1914 0.8928 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.9492 -2.5915 0.4007 36 1 0.4959 -2.0777 1.2907 37 1 1.3904 -4.4864 2.1974 38 1 2.3466 -2.5640 5.0415 39 1 3.0842 -3.5030 7.1931 40 1 3.4525 -5.9239 7.4248 41 1 3.0771 -7.4210 5.5087 42 1 3.6648 -8.5536 3.8288 43 1 1.9671 -8.7629 4.3211 44 1 3.2555 -12.2046 4.0927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182803769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:26 Heat of formation + Delta-G solvation = -65.257306 kcal Electronic energy + Delta-G solvation = -24292.876301 eV Core-core repulsion = 20722.279058 eV Total energy + Delta-G solvation = -3570.597243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52691 -39.21809 -37.92074 -34.69581 -33.72662 -33.29641 -30.76755 -30.11129 -28.63904 -28.21898 -27.76473 -26.98655 -23.56728 -22.78193 -22.16700 -20.41673 -20.21407 -18.09165 -17.36884 -16.84660 -16.34216 -16.30307 -16.16806 -15.28218 -15.06359 -14.91186 -14.41495 -14.28118 -13.87552 -13.75591 -13.44031 -13.25901 -13.01870 -12.94436 -12.56173 -12.40877 -12.36789 -12.22440 -12.17080 -12.07383 -11.77980 -11.58797 -11.26539 -10.96151 -10.91862 -10.81683 -10.41033 -10.08566 -9.89316 -9.75530 -9.61214 -9.24108 -9.19560 -8.67336 -8.01366 -6.62610 -6.31087 -4.37327 1.47864 1.68301 2.31675 2.58746 2.68131 3.20596 3.24776 3.27607 3.53180 3.75732 4.08959 4.25325 4.40297 4.47850 4.62535 4.67320 4.84225 4.94520 5.06411 5.15658 5.21617 5.27070 5.33395 5.36832 5.37768 5.49860 5.50679 5.57541 5.69610 5.77793 5.81155 5.91217 5.92247 6.19468 6.43450 6.54650 6.69253 6.84705 6.87844 6.90681 6.94048 7.27957 7.44328 7.60838 7.84242 8.09350 8.63175 9.26861 10.79978 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002900 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.107580 B = 9652.537749 C =11491.142160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.350 6.350 6 C 0.040 3.960 7 C 0.513 3.487 8 O -0.503 6.503 9 N -0.659 5.659 10 C 0.152 3.848 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.096 4.096 16 S -0.173 6.173 17 C 0.079 3.921 18 C -0.521 4.521 19 H 0.068 0.932 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.909 3.091 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.414 0.586 38 H 0.143 0.857 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 20.015 -5.144 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.065 3.935 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.269 6.269 6 C -0.040 4.040 7 C 0.300 3.700 8 O -0.377 6.377 9 N -0.305 5.305 10 C 0.051 3.949 11 C -0.140 4.140 12 C -0.143 4.143 13 C -0.138 4.138 14 C -0.139 4.139 15 C -0.211 4.211 16 S 0.073 5.927 17 C -0.068 4.068 18 C -0.560 4.560 19 H 0.086 0.914 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.735 3.265 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.251 0.749 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.718 20.643 -5.630 21.911 hybrid contribution -0.077 -1.636 0.154 1.645 sum -4.795 19.007 -5.476 20.353 Atomic orbital electron populations 1.22468 0.95554 1.02717 1.03120 1.21606 0.93263 0.93444 0.85158 1.21740 1.02228 0.92892 1.02504 1.22474 1.02600 1.01082 0.97789 1.88091 1.74110 1.21607 1.43079 1.22182 0.99927 0.85575 0.96270 1.20338 0.80682 0.81508 0.87472 1.90685 1.35711 1.60855 1.50424 1.43380 1.56816 1.11899 1.18416 1.17180 1.01813 0.90506 0.85364 1.21217 1.01125 1.00524 0.91095 1.20952 1.01239 0.95044 0.97030 1.21040 1.00871 0.93465 0.98461 1.21226 1.00234 1.00782 0.91640 1.21790 1.04781 0.95061 0.99479 1.84969 1.84463 1.06484 1.16757 1.21358 1.00151 0.85819 0.99440 1.20563 1.48136 0.90444 0.96904 0.91413 1.24948 0.94371 0.98232 0.96048 1.69931 1.44619 1.18076 1.19935 0.86380 0.78966 0.79868 0.81272 1.19827 1.20937 1.19836 0.91489 0.91245 0.92046 0.91593 0.91017 0.91645 0.91977 0.91256 0.91393 0.89631 0.89707 0.74899 0.83932 0.86087 0.86076 0.84680 0.93686 0.93700 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.25 37.16 0.31 -0.94 16 2 C 0.10 0.89 1.14 -90.62 -0.10 0.79 16 3 C -0.14 -1.02 8.84 37.16 0.33 -0.70 16 4 C -0.18 -1.33 8.25 37.16 0.31 -1.03 16 5 O -0.35 -4.22 9.52 -55.14 -0.52 -4.75 16 6 C 0.04 0.43 5.62 36.00 0.20 0.63 16 7 C 0.51 7.46 7.71 -10.99 -0.08 7.37 16 8 O -0.50 -9.03 13.67 -14.37 -0.20 -9.23 16 9 N -0.66 -9.76 5.17 -9.71 -0.05 -9.81 16 10 C 0.15 2.64 6.44 -83.43 -0.54 2.10 16 11 C -0.12 -1.96 8.72 -39.42 -0.34 -2.30 16 12 C -0.12 -1.82 10.04 -39.55 -0.40 -2.22 16 13 C -0.12 -1.86 10.04 -39.57 -0.40 -2.25 16 14 C -0.11 -2.11 9.36 -39.40 -0.37 -2.48 16 15 C -0.10 -1.82 6.12 -38.90 -0.24 -2.06 16 16 S -0.17 -3.55 20.55 -107.50 -2.21 -5.76 16 17 C 0.08 1.95 4.09 36.00 0.15 2.10 16 18 C -0.52 -13.95 9.13 -34.44 -0.31 -14.27 16 19 H 0.07 1.78 7.71 -52.48 -0.40 1.38 16 20 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 21 N -0.89 -24.87 13.29 55.43 0.74 -24.14 16 22 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.39 6.54 -51.93 -0.34 0.06 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.77 6.42 -51.93 -0.33 0.43 16 36 H 0.09 0.70 6.42 -51.93 -0.33 0.37 16 37 H 0.41 5.42 7.65 -40.82 -0.31 5.11 16 38 H 0.14 2.37 5.79 -52.48 -0.30 2.07 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.14 2.64 5.88 -52.48 -0.31 2.33 16 42 H 0.04 1.17 7.75 -51.92 -0.40 0.77 16 43 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -31.07 372.14 -9.67 -40.74 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.42 Total: 5.32 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.59 Total: -13.50 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.69 Total: -33.95 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.72 Total: -13.98 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.21 Total: -5.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.07 -9.67 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182803769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.522 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds