Wall clock time and date at job start Tue Mar 31 2020 14:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46644 * 2 1 4 4 C 1.52998 * 109.46975 * 240.00221 * 2 1 3 5 5 O 1.42897 * 109.47337 * 119.99878 * 2 1 3 6 6 C 1.42901 * 114.00150 * 60.00264 * 5 2 1 7 7 C 1.50694 * 109.47439 * 179.97438 * 6 5 2 8 8 O 1.21297 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.40134 * 120.00068 * 185.53129 * 9 7 6 11 11 C 1.38648 * 120.10201 * 24.81560 * 10 9 7 12 12 C 1.38254 * 120.00935 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.20737 * 359.97261 * 12 11 10 14 14 C 1.38191 * 120.20073 * 0.02728 * 13 12 11 15 15 C 1.38782 * 119.99201 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.10682 * 180.02562 * 15 14 13 17 17 C 1.81399 * 103.00125 * 359.95629 * 16 15 14 18 18 C 1.50695 * 109.47411 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00270 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99816 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47243 * 60.00054 * 22 20 18 24 24 H 1.48502 * 109.46645 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47126 * 299.99923 * 22 20 18 26 26 H 1.08998 * 109.47306 * 299.99829 * 1 2 3 27 27 H 1.08999 * 109.47503 * 60.00064 * 1 2 3 28 28 H 1.09003 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46758 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47119 * 300.00171 * 3 2 1 31 31 H 1.08998 * 109.47130 * 60.00062 * 3 2 1 32 32 H 1.09003 * 109.47164 * 299.99549 * 4 2 1 33 33 H 1.08998 * 109.47519 * 60.00024 * 4 2 1 34 34 H 1.09004 * 109.46745 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.47030 * 59.99406 * 6 5 2 36 36 H 1.09001 * 109.46783 * 300.00124 * 6 5 2 37 37 H 0.97000 * 119.99717 * 5.52573 * 9 7 6 38 38 H 1.08003 * 119.99520 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.89520 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.89265 * 179.74764 * 13 12 11 41 41 H 1.08006 * 120.00386 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.46737 * 300.00429 * 17 16 15 43 43 H 1.09002 * 109.46929 * 59.99775 * 17 16 15 44 44 H 0.96998 * 119.99750 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6736 1.1667 6 6 1.5848 -2.0355 1.2645 7 6 2.1422 -2.6447 2.5251 8 8 2.8330 -1.9783 3.2667 9 7 1.8740 -3.9303 2.8281 10 6 2.2938 -4.4635 4.0541 11 6 2.5051 -3.6277 5.1400 12 6 2.9198 -4.1558 6.3486 13 6 3.1246 -5.5173 6.4795 14 6 2.9166 -6.3582 5.4028 15 6 2.5004 -5.8371 4.1858 16 16 2.2336 -6.9066 2.8112 17 6 2.6306 -8.5435 3.4846 18 6 2.4474 -9.5860 2.4119 19 1 2.1248 -9.2930 1.4237 20 6 2.6916 -10.9136 2.6921 21 7 3.0840 -11.2705 3.8956 22 14 2.4652 -12.2058 1.3622 23 1 3.3696 -11.9073 0.2228 24 1 2.7889 -13.5459 1.9139 25 1 1.0564 -12.1914 0.8928 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.9492 -2.5915 0.4007 36 1 0.4959 -2.0777 1.2907 37 1 1.3904 -4.4864 2.1974 38 1 2.3466 -2.5640 5.0415 39 1 3.0842 -3.5030 7.1931 40 1 3.4525 -5.9239 7.4248 41 1 3.0771 -7.4210 5.5087 42 1 3.6648 -8.5536 3.8288 43 1 1.9671 -8.7629 4.3211 44 1 3.2555 -12.2046 4.0927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182803769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:25 Heat of formation + Delta-G solvation = -82.076973 kcal Electronic energy + Delta-G solvation = -24293.605656 eV Core-core repulsion = 20722.279058 eV Total energy + Delta-G solvation = -3571.326598 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70448 -40.10360 -39.11744 -35.96911 -35.32574 -34.44035 -32.17787 -31.30244 -30.62143 -29.04762 -28.28968 -27.77011 -25.46408 -24.15804 -23.50547 -21.57147 -20.95826 -19.47445 -18.55646 -18.28736 -17.95057 -17.21450 -17.15872 -16.80496 -16.31481 -15.99332 -15.77303 -15.38245 -14.94932 -14.83019 -14.72323 -14.54528 -14.37611 -14.23896 -14.17361 -13.85550 -13.16557 -13.11397 -12.87520 -12.81462 -12.74134 -12.72155 -12.64811 -12.54488 -12.23362 -11.92131 -11.67864 -11.64112 -11.49849 -11.00461 -10.88898 -10.78638 -10.61645 -10.52698 -9.35076 -8.35894 -8.21144 -6.50540 0.15652 0.30754 0.74141 1.41135 1.43048 1.43669 1.52197 1.61283 1.79003 2.35292 2.75218 2.88331 2.99577 3.50544 3.85864 3.89355 3.94375 4.06650 4.11279 4.14015 4.19108 4.35482 4.44876 4.47756 4.66674 4.67782 4.81746 4.82729 4.83889 4.85655 4.90085 4.94947 4.95729 5.12348 5.17742 5.25609 5.34858 5.37233 5.40790 5.51681 5.54356 5.81064 5.96989 6.10980 6.32980 6.56392 6.93916 7.18412 8.75904 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.002900 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.107580 B = 9652.537749 C =11491.142160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.381 6.381 6 C 0.046 3.954 7 C 0.512 3.488 8 O -0.540 6.540 9 N -0.656 5.656 10 C 0.150 3.850 11 C -0.127 4.127 12 C -0.105 4.105 13 C -0.116 4.116 14 C -0.131 4.131 15 C -0.122 4.122 16 S -0.151 6.151 17 C 0.082 3.918 18 C -0.542 4.542 19 H 0.069 0.931 20 C 0.018 3.982 21 N -0.922 5.922 22 Si 0.977 3.023 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.421 0.579 38 H 0.145 0.855 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 21.138 -6.347 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.057 3.943 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.301 6.301 6 C -0.033 4.033 7 C 0.301 3.699 8 O -0.417 6.417 9 N -0.302 5.302 10 C 0.049 3.951 11 C -0.149 4.149 12 C -0.127 4.127 13 C -0.136 4.136 14 C -0.155 4.155 15 C -0.237 4.237 16 S 0.093 5.907 17 C -0.065 4.065 18 C -0.581 4.581 19 H 0.087 0.913 20 C -0.184 4.184 21 N -0.560 5.560 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.188 1.188 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.260 0.740 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.168 0.832 41 H 0.132 0.868 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.669 21.787 -6.845 23.530 hybrid contribution 0.235 -1.814 0.616 1.931 sum -5.434 19.973 -6.229 21.616 Atomic orbital electron populations 1.22454 0.94150 1.03304 1.03705 1.21878 0.94430 0.93512 0.84455 1.21791 1.01561 0.92745 1.03330 1.22473 1.01868 1.01504 0.97980 1.88056 1.74994 1.22094 1.44954 1.22230 1.01220 0.85384 0.94482 1.21083 0.79725 0.80850 0.88226 1.90658 1.37460 1.61572 1.51975 1.43429 1.56616 1.12342 1.17821 1.17328 1.01222 0.89868 0.86668 1.21415 1.01391 1.00530 0.91517 1.21377 0.98681 0.95096 0.97501 1.21326 1.00046 0.93561 0.98668 1.21236 1.01215 1.00327 0.92729 1.21790 1.07247 0.95479 0.99180 1.84534 1.85075 1.03821 1.17243 1.20999 0.98095 0.88813 0.98633 1.20926 1.48324 0.91492 0.97354 0.91253 1.25904 0.93723 1.00468 0.98305 1.70050 1.45376 1.18672 1.21914 0.85318 0.79353 0.76961 0.78387 1.19039 1.20370 1.18822 0.92201 0.89397 0.91443 0.92707 0.88602 0.92396 0.91521 0.89336 0.92582 0.87668 0.86936 0.74038 0.83756 0.82422 0.83241 0.86757 0.96215 0.95874 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.25 71.98 0.59 -1.44 16 2 C 0.10 1.46 1.14 -10.79 -0.01 1.45 16 3 C -0.14 -1.89 8.84 71.98 0.64 -1.25 16 4 C -0.18 -2.27 8.25 71.98 0.59 -1.68 16 5 O -0.38 -8.79 9.52 -129.94 -1.24 -10.03 16 6 C 0.05 0.91 5.62 71.23 0.40 1.31 16 7 C 0.51 14.47 7.71 87.66 0.68 15.15 16 8 O -0.54 -19.25 13.67 15.95 0.22 -19.04 16 9 N -0.66 -18.99 5.17 -303.01 -1.57 -20.56 16 10 C 0.15 5.16 6.44 38.22 0.25 5.41 16 11 C -0.13 -4.07 8.72 22.37 0.20 -3.88 16 12 C -0.11 -2.95 10.04 22.29 0.22 -2.73 16 13 C -0.12 -3.51 10.04 22.27 0.22 -3.28 16 14 C -0.13 -4.93 9.36 22.39 0.21 -4.72 16 15 C -0.12 -4.70 6.12 22.71 0.14 -4.56 16 16 S -0.15 -6.35 20.55 -56.49 -1.16 -7.51 16 17 C 0.08 4.24 4.09 71.23 0.29 4.53 16 18 C -0.54 -29.69 9.13 25.60 0.23 -29.45 16 19 H 0.07 3.68 7.71 -2.91 -0.02 3.66 16 20 C 0.02 0.96 5.46 84.65 0.46 1.42 16 21 N -0.92 -52.89 13.29 21.45 0.28 -52.60 16 22 Si 0.98 42.05 29.54 68.60 2.03 44.08 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.67 6.54 -2.39 -0.02 0.66 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.76 6.54 -2.39 -0.02 0.75 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 35 H 0.11 1.66 6.42 -2.39 -0.02 1.65 16 36 H 0.11 1.59 6.42 -2.39 -0.02 1.57 16 37 H 0.42 10.69 7.65 -92.71 -0.71 9.98 16 38 H 0.14 4.66 5.79 -2.91 -0.02 4.64 16 39 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.11 4.74 5.88 -2.91 -0.02 4.73 16 42 H 0.02 1.09 7.75 -2.39 -0.02 1.07 16 43 H 0.02 1.26 7.75 -2.39 -0.02 1.24 16 44 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -68.82 372.14 3.98 -64.84 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.30 Total: 24.54 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 5.11 Total: -23.72 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -1.28 Total: -73.16 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.02 Total: -29.07 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -1.16 Total: -7.51 kcal Total: -68.82 3.98 -64.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182803769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.240 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds