Wall clock time and date at job start Tue Mar 31 2020 14:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46952 * 2 1 4 4 C 1.50694 * 109.47175 * 239.99616 * 2 1 3 5 5 H 1.07999 * 120.00240 * 241.35638 * 4 2 1 6 6 C 1.37883 * 119.99850 * 61.36522 * 4 2 1 7 7 N 1.31510 * 119.99861 * 193.95738 * 6 4 2 8 8 Si 1.86797 * 120.00111 * 13.95817 * 6 4 2 9 9 H 1.48505 * 109.47059 * 84.55458 * 8 6 4 10 10 H 1.48495 * 109.47397 * 204.55514 * 8 6 4 11 11 H 1.48498 * 109.47262 * 324.56006 * 8 6 4 12 12 C 1.53003 * 109.46701 * 119.99848 * 2 1 3 13 13 O 1.45198 * 109.47083 * 299.99971 * 12 2 1 14 14 C 1.34232 * 116.99965 * 180.02562 * 13 12 2 15 15 O 1.20830 * 120.00027 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.46494 * 109.47175 * 179.97438 * 16 14 13 18 18 C 1.34779 * 119.99986 * 180.02562 * 17 16 14 19 19 O 1.21573 * 119.99585 * 359.97438 * 18 17 16 20 20 C 1.47723 * 120.00402 * 179.97438 * 18 17 16 21 21 C 1.39654 * 120.11197 * 0.27217 * 20 18 17 22 22 C 1.37840 * 119.87494 * 180.22830 * 21 20 18 23 23 C 1.38657 * 120.12164 * 359.49739 * 22 21 20 24 24 F 1.35092 * 119.88251 * 180.27480 * 23 22 21 25 25 C 1.38658 * 120.23494 * 0.24937 * 23 22 21 26 26 C 1.37839 * 120.11697 * 0.02562 * 25 23 22 27 27 H 1.08996 * 109.47501 * 309.31880 * 1 2 3 28 28 H 1.09002 * 109.46646 * 69.31416 * 1 2 3 29 29 H 1.08999 * 109.47047 * 189.31645 * 1 2 3 30 30 H 1.09005 * 109.46838 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47385 * 299.99841 * 3 2 1 32 32 H 1.09000 * 109.47212 * 60.00026 * 3 2 1 33 33 H 0.97003 * 120.00452 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46893 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.46961 * 60.00293 * 12 2 1 36 36 H 1.09000 * 109.46913 * 59.99340 * 16 14 13 37 37 H 1.08998 * 109.46548 * 299.99886 * 16 14 13 38 38 H 0.96999 * 120.00088 * 359.97438 * 17 16 14 39 39 H 1.07997 * 120.06636 * 359.97438 * 21 20 18 40 40 H 1.08002 * 119.94000 * 179.76958 * 22 21 20 41 41 H 1.08000 * 119.93883 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.05550 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7227 -0.2232 -2.4825 7 7 1.9164 -0.9723 -3.5459 8 14 1.0279 1.5007 -2.6684 9 1 2.1420 2.4818 -2.7080 10 1 0.2475 1.5867 -3.9288 11 1 0.1420 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9169 -0.5465 3.6229 15 8 2.6139 -1.5323 3.6707 16 6 1.4520 0.1101 4.8972 17 7 1.9758 -0.6306 6.0475 18 6 1.6868 -0.2236 7.2994 19 8 0.9919 0.7585 7.4741 20 6 2.2145 -0.9708 8.4594 21 6 3.0178 -2.0959 8.2615 22 6 3.5037 -2.7922 9.3473 23 6 3.2049 -2.3714 10.6342 24 9 3.6883 -3.0542 11.6949 25 6 2.4122 -1.2518 10.8363 26 6 1.9164 -0.5515 9.7575 27 1 -0.3634 0.6511 0.7950 28 1 -0.3633 0.3630 -0.9615 29 1 -0.3633 -1.0141 0.1664 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6989 -0.6295 -4.4269 34 1 3.1300 -0.7209 1.2496 35 1 1.6766 -1.7488 1.2493 36 1 0.3625 0.1087 4.9301 37 1 1.8152 1.1373 4.9301 38 1 2.5300 -1.4144 5.9081 39 1 3.2545 -2.4223 7.2596 40 1 4.1219 -3.6647 9.1955 41 1 2.1828 -0.9280 11.8408 42 1 1.2994 0.3206 9.9161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184797567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:48 Heat of formation + Delta-G solvation = -126.242363 kcal Electronic energy + Delta-G solvation = -26066.027512 eV Core-core repulsion = 21926.572583 eV Total energy + Delta-G solvation = -4139.454929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.45012 -40.83584 -40.11618 -38.52574 -37.14326 -35.32235 -34.85929 -31.86679 -31.75229 -31.44506 -28.71397 -26.39313 -26.12063 -24.96592 -24.05359 -23.44690 -21.23022 -20.91065 -19.27617 -18.95738 -18.03068 -17.19838 -17.01556 -16.62446 -16.14192 -16.13417 -15.98853 -15.71738 -15.38355 -15.24131 -15.04746 -14.30003 -14.00631 -13.88870 -13.66570 -13.24281 -13.15161 -13.05177 -12.88103 -12.53716 -12.36998 -12.14125 -11.97961 -11.75213 -11.58335 -10.74378 -10.47241 -10.43153 -10.38334 -10.25421 -10.12210 -9.87987 -9.73125 -9.62129 -9.25360 -9.17532 -8.71408 -8.52634 -6.21669 -4.20613 0.16408 0.66857 2.18237 2.31033 2.32415 3.13698 3.23273 3.24652 3.31850 3.37164 3.63759 4.12555 4.22102 4.30249 4.31579 4.64060 4.71637 4.80132 5.03904 5.10225 5.10854 5.26600 5.35172 5.51663 5.59793 5.65536 5.71178 5.78595 5.83527 6.03446 6.16437 6.22915 6.45710 6.50497 6.61496 6.72055 6.72186 6.89450 7.04142 7.15399 7.36570 7.61347 7.73096 7.85316 8.34711 8.80035 9.41430 10.90835 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.035557 B = 0.002037 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.287695 B =13741.237142 C =14313.917557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 C -0.147 4.147 4 C -0.520 4.520 5 H 0.076 0.924 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.284 1.284 10 H -0.304 1.304 11 H -0.246 1.246 12 C 0.094 3.906 13 O -0.346 6.346 14 C 0.454 3.546 15 O -0.515 6.515 16 C 0.125 3.875 17 N -0.717 5.717 18 C 0.565 3.435 19 O -0.532 6.532 20 C -0.145 4.145 21 C -0.054 4.054 22 C -0.160 4.160 23 C 0.125 3.875 24 F -0.134 7.134 25 C -0.163 4.163 26 C -0.028 4.028 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.266 0.734 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.412 0.588 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -0.158 26.630 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.042 3.958 3 C -0.204 4.204 4 C -0.558 4.558 5 H 0.094 0.906 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.172 1.172 12 C 0.021 3.979 13 O -0.261 6.261 14 C 0.296 3.704 15 O -0.405 6.405 16 C 0.000 4.000 17 N -0.373 5.373 18 C 0.353 3.647 19 O -0.410 6.410 20 C -0.149 4.149 21 C -0.073 4.073 22 C -0.179 4.179 23 C 0.105 3.895 24 F -0.113 7.113 25 C -0.181 4.181 26 C -0.047 4.047 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.251 0.749 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.454 0.194 26.495 26.499 hybrid contribution 0.258 0.181 -0.316 0.446 sum 0.711 0.375 26.179 26.191 Atomic orbital electron populations 1.22239 0.97282 0.99925 1.00378 1.18609 0.93238 0.92648 0.91334 1.22302 1.00712 0.98089 0.99290 1.20627 1.34741 1.12502 0.87905 0.90612 1.24920 0.94491 0.97472 0.95608 1.69936 1.47795 1.35960 0.98771 0.87282 0.79551 0.85241 0.76199 1.21204 1.23267 1.17182 1.23529 0.98801 0.95856 0.79687 1.86476 1.68984 1.55849 1.14778 1.23254 0.77804 0.82592 0.86707 1.90639 1.36035 1.25804 1.87998 1.20666 1.01671 0.96720 0.80913 1.45654 1.54208 1.32857 1.04601 1.18050 0.80213 0.84076 0.82362 1.90817 1.37980 1.26469 1.85692 1.19916 1.02851 0.98200 0.93884 1.21281 0.93728 0.92800 0.99461 1.21131 1.03550 1.02549 0.90644 1.18012 0.95819 0.91872 0.83771 1.91534 1.85969 1.78594 1.55174 1.21168 1.00255 0.95776 1.00943 1.21150 0.95422 0.98219 0.89922 0.94841 0.92620 0.93759 0.93142 0.94091 0.94017 0.92390 0.91489 0.91379 0.86791 0.86804 0.74901 0.84161 0.83787 0.83824 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 7.58 37.16 0.28 -2.66 16 2 C 0.04 0.94 0.58 -155.66 -0.09 0.85 16 3 C -0.15 -3.06 7.55 37.16 0.28 -2.77 16 4 C -0.52 -13.79 8.62 -34.44 -0.30 -14.08 16 5 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.16 5.32 -17.82 -0.09 2.06 16 7 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 8 Si 0.89 21.03 22.79 -169.99 -3.87 17.15 16 9 H -0.28 -6.72 7.10 56.52 0.40 -6.31 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.25 -5.39 4.65 56.52 0.26 -5.13 16 12 C 0.09 1.82 4.25 37.16 0.16 1.98 16 13 O -0.35 -5.72 9.06 -39.26 -0.36 -6.08 16 14 C 0.45 6.41 8.03 36.01 0.29 6.70 16 15 O -0.52 -8.24 15.42 -18.75 -0.29 -8.52 16 16 C 0.12 1.34 6.27 -5.20 -0.03 1.31 16 17 N -0.72 -7.17 5.48 -62.47 -0.34 -7.51 16 18 C 0.57 6.00 7.77 -12.38 -0.10 5.90 16 19 O -0.53 -7.14 16.34 5.30 0.09 -7.06 16 20 C -0.15 -1.24 5.87 -104.97 -0.62 -1.85 16 21 C -0.05 -0.37 9.54 -39.20 -0.37 -0.75 16 22 C -0.16 -1.05 10.01 -39.57 -0.40 -1.45 16 23 C 0.12 0.91 7.31 -39.27 -0.29 0.62 16 24 F -0.13 -1.08 17.26 2.25 0.04 -1.04 16 25 C -0.16 -1.07 10.01 -39.57 -0.40 -1.47 16 26 C -0.03 -0.21 9.59 -39.21 -0.38 -0.59 16 27 H 0.03 0.62 7.94 -51.93 -0.41 0.21 16 28 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 29 H 0.04 0.89 8.12 -51.93 -0.42 0.47 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 32 H 0.04 0.76 7.68 -51.93 -0.40 0.36 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 35 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.41 3.75 5.47 -40.82 -0.22 3.52 16 39 H 0.14 0.76 6.40 -52.49 -0.34 0.43 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.15 1.05 7.65 -52.49 -0.40 0.65 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -31.34 350.37 -5.91 -37.26 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.19 Total: 2.12 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.05 Total: -6.20 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.43 Total: -32.90 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.56 Total: -21.66 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -3.87 Total: 17.15 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.34 -5.91 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184797567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.985 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds