Wall clock time and date at job start Tue Mar 31 2020 14:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46952 * 2 1 4 4 C 1.50694 * 109.47175 * 239.99616 * 2 1 3 5 5 H 1.07999 * 120.00240 * 241.35638 * 4 2 1 6 6 C 1.37883 * 119.99850 * 61.36522 * 4 2 1 7 7 N 1.31510 * 119.99861 * 193.95738 * 6 4 2 8 8 Si 1.86797 * 120.00111 * 13.95817 * 6 4 2 9 9 H 1.48505 * 109.47059 * 84.55458 * 8 6 4 10 10 H 1.48495 * 109.47397 * 204.55514 * 8 6 4 11 11 H 1.48498 * 109.47262 * 324.56006 * 8 6 4 12 12 C 1.53003 * 109.46701 * 119.99848 * 2 1 3 13 13 O 1.45198 * 109.47083 * 299.99971 * 12 2 1 14 14 C 1.34232 * 116.99965 * 180.02562 * 13 12 2 15 15 O 1.20830 * 120.00027 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.46494 * 109.47175 * 179.97438 * 16 14 13 18 18 C 1.34779 * 119.99986 * 180.02562 * 17 16 14 19 19 O 1.21573 * 119.99585 * 359.97438 * 18 17 16 20 20 C 1.47723 * 120.00402 * 179.97438 * 18 17 16 21 21 C 1.39654 * 120.11197 * 0.27217 * 20 18 17 22 22 C 1.37840 * 119.87494 * 180.22830 * 21 20 18 23 23 C 1.38657 * 120.12164 * 359.49739 * 22 21 20 24 24 F 1.35092 * 119.88251 * 180.27480 * 23 22 21 25 25 C 1.38658 * 120.23494 * 0.24937 * 23 22 21 26 26 C 1.37839 * 120.11697 * 0.02562 * 25 23 22 27 27 H 1.08996 * 109.47501 * 309.31880 * 1 2 3 28 28 H 1.09002 * 109.46646 * 69.31416 * 1 2 3 29 29 H 1.08999 * 109.47047 * 189.31645 * 1 2 3 30 30 H 1.09005 * 109.46838 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47385 * 299.99841 * 3 2 1 32 32 H 1.09000 * 109.47212 * 60.00026 * 3 2 1 33 33 H 0.97003 * 120.00452 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46893 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.46961 * 60.00293 * 12 2 1 36 36 H 1.09000 * 109.46913 * 59.99340 * 16 14 13 37 37 H 1.08998 * 109.46548 * 299.99886 * 16 14 13 38 38 H 0.96999 * 120.00088 * 359.97438 * 17 16 14 39 39 H 1.07997 * 120.06636 * 359.97438 * 21 20 18 40 40 H 1.08002 * 119.94000 * 179.76958 * 22 21 20 41 41 H 1.08000 * 119.93883 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.05550 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7227 -0.2232 -2.4825 7 7 1.9164 -0.9723 -3.5459 8 14 1.0279 1.5007 -2.6684 9 1 2.1420 2.4818 -2.7080 10 1 0.2475 1.5867 -3.9288 11 1 0.1420 1.8043 -1.5159 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9169 -0.5465 3.6229 15 8 2.6139 -1.5323 3.6707 16 6 1.4520 0.1101 4.8972 17 7 1.9758 -0.6306 6.0475 18 6 1.6868 -0.2236 7.2994 19 8 0.9919 0.7585 7.4741 20 6 2.2145 -0.9708 8.4594 21 6 3.0178 -2.0959 8.2615 22 6 3.5037 -2.7922 9.3473 23 6 3.2049 -2.3714 10.6342 24 9 3.6883 -3.0542 11.6949 25 6 2.4122 -1.2518 10.8363 26 6 1.9164 -0.5515 9.7575 27 1 -0.3634 0.6511 0.7950 28 1 -0.3633 0.3630 -0.9615 29 1 -0.3633 -1.0141 0.1664 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6989 -0.6295 -4.4269 34 1 3.1300 -0.7209 1.2496 35 1 1.6766 -1.7488 1.2493 36 1 0.3625 0.1087 4.9301 37 1 1.8152 1.1373 4.9301 38 1 2.5300 -1.4144 5.9081 39 1 3.2545 -2.4223 7.2596 40 1 4.1219 -3.6647 9.1955 41 1 2.1828 -0.9280 11.8408 42 1 1.2994 0.3206 9.9161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184797567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:47 Heat of formation + Delta-G solvation = -145.913937 kcal Electronic energy + Delta-G solvation = -26066.880536 eV Core-core repulsion = 21926.572583 eV Total energy + Delta-G solvation = -4140.307953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.03135 -41.84580 -41.08621 -39.23396 -38.58766 -36.84508 -35.79389 -33.85229 -32.38166 -32.05888 -29.69915 -28.01626 -27.57655 -26.95730 -24.76153 -24.00740 -22.34650 -21.72052 -20.99594 -19.75566 -18.74921 -18.28456 -18.05197 -17.79648 -17.73177 -17.26782 -16.79979 -16.72973 -16.51451 -16.32996 -15.83397 -15.20043 -15.10887 -14.83177 -14.78213 -14.52636 -14.23810 -14.09463 -14.01257 -13.79360 -13.74680 -13.61641 -13.30252 -13.15904 -12.43111 -12.26769 -12.09540 -11.99933 -11.86575 -11.66877 -11.47613 -11.31578 -11.06425 -10.62680 -10.45499 -10.41494 -10.24192 -9.85020 -8.33419 -6.35677 -0.44191 0.15558 1.04014 1.29139 1.36889 1.39322 1.50664 1.60094 2.17470 2.33171 2.63007 3.02876 3.09269 3.43628 3.58727 3.66792 3.82030 4.02669 4.13874 4.14215 4.20751 4.23408 4.32448 4.40897 4.56752 4.71781 4.81636 4.84965 4.85723 4.95081 4.98847 4.99834 5.08129 5.12454 5.16698 5.17785 5.44888 5.47002 5.66675 5.70132 5.73868 6.24905 6.26214 6.57656 6.68118 6.95499 7.29672 8.82832 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.035557 B = 0.002037 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.287695 B =13741.237142 C =14313.917557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.036 3.964 3 C -0.146 4.146 4 C -0.520 4.520 5 H 0.035 0.965 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.940 3.060 9 H -0.280 1.280 10 H -0.313 1.313 11 H -0.210 1.210 12 C 0.106 3.894 13 O -0.344 6.344 14 C 0.458 3.542 15 O -0.534 6.534 16 C 0.133 3.867 17 N -0.713 5.713 18 C 0.569 3.431 19 O -0.563 6.563 20 C -0.159 4.159 21 C -0.052 4.052 22 C -0.160 4.160 23 C 0.116 3.884 24 F -0.139 7.139 25 C -0.159 4.159 26 C -0.033 4.033 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.266 0.734 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.417 0.583 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 1.256 28.961 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.035 3.965 3 C -0.203 4.203 4 C -0.558 4.558 5 H 0.053 0.947 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.770 3.230 9 H -0.207 1.207 10 H -0.242 1.242 11 H -0.134 1.134 12 C 0.032 3.968 13 O -0.259 6.259 14 C 0.302 3.698 15 O -0.424 6.424 16 C 0.009 3.991 17 N -0.370 5.370 18 C 0.358 3.642 19 O -0.443 6.443 20 C -0.163 4.163 21 C -0.070 4.070 22 C -0.178 4.178 23 C 0.097 3.903 24 F -0.118 7.118 25 C -0.177 4.177 26 C -0.052 4.052 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.256 0.744 39 H 0.172 0.828 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.207 1.598 28.866 28.911 hybrid contribution 0.543 -0.398 -0.933 1.151 sum 0.336 1.201 27.933 27.961 Atomic orbital electron populations 1.22175 0.95989 1.00673 1.00782 1.18560 0.94195 0.93388 0.90367 1.22251 1.00811 0.96849 1.00342 1.20913 1.33412 1.11321 0.90139 0.94690 1.25760 0.95258 1.01392 0.95239 1.70080 1.50295 1.38131 0.99410 0.86382 0.79547 0.80229 0.76886 1.20741 1.24228 1.13365 1.23040 0.98163 0.95127 0.80429 1.86440 1.69146 1.55579 1.14741 1.23859 0.77040 0.82232 0.86715 1.90643 1.36919 1.26797 1.88088 1.20728 1.02448 0.96916 0.79010 1.45647 1.54090 1.32902 1.04350 1.18295 0.79551 0.83653 0.82712 1.90799 1.39541 1.27908 1.86084 1.19881 1.03989 0.98947 0.93439 1.21407 0.93133 0.92187 1.00288 1.21346 1.03329 1.02917 0.90216 1.18212 0.96058 0.92137 0.83938 1.91524 1.86075 1.78734 1.55460 1.21343 0.99508 0.95236 1.01637 1.21231 0.95590 0.98463 0.89899 0.91807 0.93752 0.93885 0.93260 0.94850 0.90851 0.92492 0.92243 0.92450 0.85317 0.85258 0.74350 0.82840 0.82027 0.81913 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 7.58 71.98 0.55 -4.90 16 2 C 0.04 1.52 0.58 -52.93 -0.03 1.49 16 3 C -0.15 -5.63 7.55 71.98 0.54 -5.08 16 4 C -0.52 -28.04 8.62 25.60 0.22 -27.82 16 5 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 6 C 0.02 1.21 5.32 84.66 0.45 1.66 16 7 N -0.94 -57.21 13.96 21.45 0.30 -56.91 16 8 Si 0.94 42.73 22.79 68.60 1.56 44.29 16 9 H -0.28 -12.45 7.10 99.48 0.71 -11.75 16 10 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 11 H -0.21 -8.30 4.65 99.48 0.46 -7.84 16 12 C 0.11 4.00 4.25 71.98 0.31 4.31 16 13 O -0.34 -10.48 9.06 -51.43 -0.47 -10.95 16 14 C 0.46 11.91 8.03 71.24 0.57 12.48 16 15 O -0.53 -16.29 15.42 21.95 0.34 -15.95 16 16 C 0.13 2.50 6.27 85.64 0.54 3.04 16 17 N -0.71 -12.78 5.48 -469.83 -2.57 -15.36 16 18 C 0.57 11.13 7.77 86.75 0.67 11.80 16 19 O -0.56 -14.30 16.34 -3.95 -0.06 -14.37 16 20 C -0.16 -2.47 5.87 -20.09 -0.12 -2.59 16 21 C -0.05 -0.62 9.54 22.52 0.21 -0.40 16 22 C -0.16 -1.78 10.01 22.28 0.22 -1.56 16 23 C 0.12 1.49 7.31 22.47 0.16 1.66 16 24 F -0.14 -2.03 17.26 44.97 0.78 -1.25 16 25 C -0.16 -1.82 10.01 22.28 0.22 -1.59 16 26 C -0.03 -0.45 9.59 22.51 0.22 -0.24 16 27 H 0.06 2.11 7.94 -2.39 -0.02 2.09 16 28 H 0.04 1.82 4.30 -2.39 -0.01 1.81 16 29 H 0.04 1.66 8.12 -2.39 -0.02 1.64 16 30 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.03 1.34 2.25 -2.39 -0.01 1.33 16 32 H 0.07 2.36 7.68 -2.39 -0.02 2.34 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 35 H 0.06 2.26 8.13 -2.39 -0.02 2.25 16 36 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.42 6.76 5.47 -92.71 -0.51 6.26 16 39 H 0.15 1.36 6.40 -2.91 -0.02 1.34 16 40 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.15 1.97 7.65 -2.91 -0.02 1.95 16 Total: -1.00 -68.41 350.37 4.93 -63.48 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.32 Total: 14.77 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.74 Total: -7.76 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -2.27 Total: -72.27 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.19 Total: -41.27 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.56 Total: 44.29 kcal Total: -68.41 4.93 -63.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184797567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.431 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds