Wall clock time and date at job start Tue Mar 31 2020 13:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46879 * 2 1 4 4 C 1.50703 * 109.46942 * 180.02562 * 3 2 1 5 5 S 1.70613 * 124.52705 * 269.97739 * 4 3 2 6 6 C 1.75822 * 91.56729 * 180.02562 * 5 4 3 7 7 C 1.46586 * 125.46108 * 180.02562 * 6 5 4 8 8 O 1.21694 * 120.00046 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99653 * 359.97438 * 7 6 5 10 10 C 1.47064 * 136.05735 * 359.62419 * 9 7 6 11 11 C 1.53238 * 88.08315 * 207.20894 * 10 9 7 12 12 O 1.42892 * 114.19972 * 87.72853 * 11 10 9 13 13 C 1.50702 * 114.32568 * 220.47345 * 11 10 9 14 14 H 1.08004 * 120.00243 * 99.23460 * 13 11 10 15 15 C 1.37881 * 120.00154 * 279.23623 * 13 11 10 16 16 N 1.31518 * 119.99569 * 10.18560 * 15 13 11 17 17 Si 1.86796 * 120.00278 * 190.18779 * 15 13 11 18 18 H 1.48500 * 109.46927 * 84.99436 * 17 15 13 19 19 H 1.48501 * 109.47248 * 204.99434 * 17 15 13 20 20 H 1.48503 * 109.47058 * 324.99301 * 17 15 13 21 21 C 1.47064 * 136.05609 * 180.02562 * 9 7 6 22 22 C 1.36650 * 109.08187 * 359.97438 * 6 5 4 23 23 C 1.33819 * 124.51978 * 90.00147 * 4 3 2 24 24 C 1.50699 * 122.45230 * 359.95830 * 23 4 3 25 25 C 1.53003 * 109.47327 * 84.99841 * 24 23 4 26 26 H 1.09001 * 109.47337 * 300.00075 * 1 2 3 27 27 H 1.09007 * 109.47552 * 59.99687 * 1 2 3 28 28 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46735 * 240.00619 * 2 1 3 30 30 H 1.08990 * 109.47331 * 120.00319 * 2 1 3 31 31 H 1.09001 * 109.47504 * 60.00292 * 3 2 1 32 32 H 1.08998 * 109.47296 * 299.99902 * 3 2 1 33 33 H 1.09003 * 113.46975 * 321.94228 * 10 9 7 34 34 H 1.09004 * 113.46769 * 92.37796 * 10 9 7 35 35 H 0.96708 * 113.99928 * 90.31606 * 12 11 10 36 36 H 0.97005 * 119.99597 * 179.97438 * 16 15 13 37 37 H 1.08994 * 113.46595 * 267.62089 * 21 9 7 38 38 H 1.08999 * 113.46633 * 38.00518 * 21 9 7 39 39 H 1.08001 * 123.34599 * 180.26531 * 22 6 5 40 40 H 1.09004 * 109.47063 * 204.99979 * 24 23 4 41 41 H 1.09004 * 109.47240 * 324.99691 * 24 23 4 42 42 H 1.08993 * 109.46844 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.46706 * 300.00015 * 25 24 23 44 44 H 1.09001 * 109.46600 * 59.99867 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 16 4.5146 1.4429 1.4046 6 6 5.9894 1.4435 0.4474 7 6 7.3528 1.4434 0.9859 8 8 8.3059 1.4434 0.2293 9 7 7.5506 1.4435 2.3191 10 6 6.6966 1.4502 3.5164 11 6 7.8398 2.1438 4.2649 12 8 7.8282 3.5689 4.1612 13 6 8.0486 1.6508 5.6736 14 1 8.8275 0.9329 5.8846 15 6 7.2453 2.1161 6.6931 16 7 6.1761 2.8294 6.4143 17 14 7.6757 1.7333 8.4701 18 1 8.6491 2.7368 8.9707 19 1 6.4445 1.7816 9.2990 20 1 8.2755 0.3774 8.5531 21 6 8.7156 1.4439 3.2167 22 6 5.6611 1.4428 -0.8791 23 6 4.3048 1.4427 -1.1035 24 6 3.7147 1.4420 -2.4902 25 6 3.3984 2.8788 -2.9106 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.8076 2.0723 3.4120 34 1 6.4718 0.4530 3.8948 35 1 7.3254 4.0101 4.8595 36 1 5.6108 3.1564 7.1316 37 1 9.0345 0.4451 3.5145 38 1 9.5400 2.0599 2.8576 39 1 6.3942 1.4388 -1.6721 40 1 4.4298 1.0080 -3.1891 41 1 2.7982 0.8520 -2.4948 42 1 2.9712 2.8781 -3.9133 43 1 2.6834 3.3127 -2.2117 44 1 4.3150 3.4687 -2.9060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186804449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:12 Heat of formation + Delta-G solvation = -40.476594 kcal Electronic energy + Delta-G solvation = -25168.656551 eV Core-core repulsion = 21599.133881 eV Total energy + Delta-G solvation = -3569.522671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67636 -38.87643 -37.27270 -34.92592 -34.07545 -32.65034 -32.33909 -30.16956 -28.91433 -26.72851 -25.29389 -25.17090 -24.11258 -22.64611 -21.55221 -20.24734 -18.94359 -18.12733 -17.69366 -17.03004 -16.04281 -15.66182 -15.13330 -14.90885 -14.84120 -14.35991 -14.24450 -14.04272 -13.90253 -13.61136 -13.21091 -12.87869 -12.73810 -12.56396 -12.51853 -12.10556 -12.03876 -11.84923 -11.79616 -11.58449 -11.39211 -11.22343 -11.11811 -11.04938 -10.99539 -10.82968 -10.58529 -10.40141 -10.19820 -9.72961 -9.17183 -8.93375 -8.50417 -8.37300 -8.20049 -7.87570 -6.43396 -4.52869 0.78301 1.75395 2.20429 2.55103 3.14044 3.22019 3.23826 3.49284 3.70375 4.16815 4.61201 4.77123 4.80300 4.86682 4.88748 5.03580 5.10896 5.24493 5.31544 5.38769 5.46903 5.53791 5.62032 5.62670 5.65751 5.78661 5.80342 5.85037 5.90857 5.98671 6.06940 6.08429 6.17654 6.19050 6.35552 6.44262 6.49594 6.59815 6.64765 6.68303 7.02787 7.57976 7.73791 8.41594 8.50891 8.69517 9.18123 9.21381 10.62898 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003645 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.175911 B = 7679.961894 C = 8965.669221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.049 4.049 4 C -0.218 4.218 5 S 0.233 5.767 6 C -0.248 4.248 7 C 0.608 3.392 8 O -0.556 6.556 9 N -0.634 5.634 10 C 0.074 3.926 11 C 0.243 3.757 12 O -0.565 6.565 13 C -0.541 4.541 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.888 5.888 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.111 3.889 22 C -0.063 4.063 23 C -0.119 4.119 24 C -0.061 4.061 25 C -0.147 4.147 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.387 0.613 36 H 0.272 0.728 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.147 0.853 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 -3.357 -11.169 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.088 4.088 4 C -0.337 4.337 5 S 0.505 5.495 6 C -0.368 4.368 7 C 0.397 3.603 8 O -0.438 6.438 9 N -0.366 5.366 10 C -0.049 4.049 11 C 0.201 3.799 12 O -0.374 6.374 13 C -0.579 4.579 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.526 5.526 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.011 4.011 22 C -0.096 4.096 23 C -0.132 4.132 24 C -0.101 4.101 25 C -0.204 4.204 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.164 0.836 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.055 -3.380 -10.620 15.698 hybrid contribution 0.020 -0.086 -0.114 0.145 sum -11.034 -3.466 -10.734 15.780 Atomic orbital electron populations 1.21779 0.95506 1.01761 1.01876 1.21548 0.95682 0.95871 1.02707 1.20189 0.87607 0.97764 1.03206 1.24302 1.01066 1.09520 0.98834 1.83682 0.93475 1.66779 1.05595 1.24568 0.97230 1.17240 0.97790 1.16407 0.86539 0.76928 0.80426 1.90750 1.42227 1.53455 1.57328 1.49641 1.13748 1.70246 1.03007 1.24236 0.97908 1.01519 0.81284 1.19446 0.88862 0.79876 0.91730 1.86101 1.76693 1.18818 1.55754 1.21334 1.18382 1.27141 0.91077 0.90820 1.25079 0.93655 0.94160 1.00072 1.69767 1.13052 1.36010 1.33755 0.86408 0.78104 0.79177 0.83226 1.20108 1.21026 1.19594 1.23323 0.90638 1.00285 0.86842 1.20480 0.95384 0.98712 0.95022 1.18518 0.92336 1.06449 0.95891 1.20206 1.00412 0.97576 0.91866 1.21751 1.01863 0.96220 1.00597 0.92558 0.92730 0.92598 0.91666 0.91624 0.90793 0.90100 0.91103 0.89667 0.76178 0.91796 0.89345 0.91319 0.83583 0.91187 0.91196 0.92636 0.92648 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.05 -0.50 5.04 -27.88 -0.14 -0.64 16 4 C -0.22 -2.89 5.53 -35.86 -0.20 -3.09 16 5 S 0.23 3.72 19.85 -107.50 -2.13 1.58 16 6 C -0.25 -4.59 6.45 -36.79 -0.24 -4.83 16 7 C 0.61 13.38 8.03 -12.89 -0.10 13.27 16 8 O -0.56 -13.53 17.62 5.19 0.09 -13.44 16 9 N -0.63 -13.95 3.69 -186.99 -0.69 -14.64 16 10 C 0.07 1.61 6.64 -8.65 -0.06 1.56 16 11 C 0.24 5.75 1.40 -91.40 -0.13 5.62 16 12 O -0.57 -14.18 13.56 -35.23 -0.48 -14.66 16 13 C -0.54 -13.25 8.65 -34.44 -0.30 -13.54 16 14 H 0.07 1.76 7.84 -52.48 -0.41 1.35 16 15 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 16 N -0.89 -21.84 11.81 55.43 0.65 -21.19 16 17 Si 0.90 18.99 29.55 -169.99 -5.02 13.96 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C 0.11 2.44 8.03 -8.52 -0.07 2.37 16 22 C -0.06 -1.01 9.78 -40.43 -0.40 -1.40 16 23 C -0.12 -1.60 5.04 -106.45 -0.54 -2.13 16 24 C -0.06 -0.63 5.54 -27.88 -0.15 -0.78 16 25 C -0.15 -1.38 9.83 37.16 0.37 -1.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.60 7.74 -51.93 -0.40 0.20 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.74 6.39 -51.93 -0.33 0.40 16 33 H 0.07 1.56 6.39 -51.93 -0.33 1.22 16 34 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 35 H 0.39 9.63 7.09 45.56 0.32 9.95 16 36 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 37 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.07 0.63 7.06 -51.93 -0.37 0.26 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.52 7.24 -51.93 -0.38 0.15 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -27.92 373.93 -9.88 -37.80 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.10 Total: 9.90 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.83 Total: -4.96 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.04 Total: -35.83 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.39 Total: -28.10 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.13 Total: 1.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.92 -9.88 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186804449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.677 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds