Wall clock time and date at job start Tue Mar 31 2020 13:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46879 * 2 1 4 4 C 1.50703 * 109.46942 * 180.02562 * 3 2 1 5 5 S 1.70613 * 124.52705 * 269.97739 * 4 3 2 6 6 C 1.75822 * 91.56729 * 180.02562 * 5 4 3 7 7 C 1.46586 * 125.46108 * 180.02562 * 6 5 4 8 8 O 1.21694 * 120.00046 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99653 * 359.97438 * 7 6 5 10 10 C 1.47064 * 136.05735 * 359.62419 * 9 7 6 11 11 C 1.53238 * 88.08315 * 207.20894 * 10 9 7 12 12 O 1.42892 * 114.19972 * 87.72853 * 11 10 9 13 13 C 1.50702 * 114.32568 * 220.47345 * 11 10 9 14 14 H 1.08004 * 120.00243 * 99.23460 * 13 11 10 15 15 C 1.37881 * 120.00154 * 279.23623 * 13 11 10 16 16 N 1.31518 * 119.99569 * 10.18560 * 15 13 11 17 17 Si 1.86796 * 120.00278 * 190.18779 * 15 13 11 18 18 H 1.48500 * 109.46927 * 84.99436 * 17 15 13 19 19 H 1.48501 * 109.47248 * 204.99434 * 17 15 13 20 20 H 1.48503 * 109.47058 * 324.99301 * 17 15 13 21 21 C 1.47064 * 136.05609 * 180.02562 * 9 7 6 22 22 C 1.36650 * 109.08187 * 359.97438 * 6 5 4 23 23 C 1.33819 * 124.51978 * 90.00147 * 4 3 2 24 24 C 1.50699 * 122.45230 * 359.95830 * 23 4 3 25 25 C 1.53003 * 109.47327 * 84.99841 * 24 23 4 26 26 H 1.09001 * 109.47337 * 300.00075 * 1 2 3 27 27 H 1.09007 * 109.47552 * 59.99687 * 1 2 3 28 28 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46735 * 240.00619 * 2 1 3 30 30 H 1.08990 * 109.47331 * 120.00319 * 2 1 3 31 31 H 1.09001 * 109.47504 * 60.00292 * 3 2 1 32 32 H 1.08998 * 109.47296 * 299.99902 * 3 2 1 33 33 H 1.09003 * 113.46975 * 321.94228 * 10 9 7 34 34 H 1.09004 * 113.46769 * 92.37796 * 10 9 7 35 35 H 0.96708 * 113.99928 * 90.31606 * 12 11 10 36 36 H 0.97005 * 119.99597 * 179.97438 * 16 15 13 37 37 H 1.08994 * 113.46595 * 267.62089 * 21 9 7 38 38 H 1.08999 * 113.46633 * 38.00518 * 21 9 7 39 39 H 1.08001 * 123.34599 * 180.26531 * 22 6 5 40 40 H 1.09004 * 109.47063 * 204.99979 * 24 23 4 41 41 H 1.09004 * 109.47240 * 324.99691 * 24 23 4 42 42 H 1.08993 * 109.46844 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.46706 * 300.00015 * 25 24 23 44 44 H 1.09001 * 109.46600 * 59.99867 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 16 4.5146 1.4429 1.4046 6 6 5.9894 1.4435 0.4474 7 6 7.3528 1.4434 0.9859 8 8 8.3059 1.4434 0.2293 9 7 7.5506 1.4435 2.3191 10 6 6.6966 1.4502 3.5164 11 6 7.8398 2.1438 4.2649 12 8 7.8282 3.5689 4.1612 13 6 8.0486 1.6508 5.6736 14 1 8.8275 0.9329 5.8846 15 6 7.2453 2.1161 6.6931 16 7 6.1761 2.8294 6.4143 17 14 7.6757 1.7333 8.4701 18 1 8.6491 2.7368 8.9707 19 1 6.4445 1.7816 9.2990 20 1 8.2755 0.3774 8.5531 21 6 8.7156 1.4439 3.2167 22 6 5.6611 1.4428 -0.8791 23 6 4.3048 1.4427 -1.1035 24 6 3.7147 1.4420 -2.4902 25 6 3.3984 2.8788 -2.9106 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.8076 2.0723 3.4120 34 1 6.4718 0.4530 3.8948 35 1 7.3254 4.0101 4.8595 36 1 5.6108 3.1564 7.1316 37 1 9.0345 0.4451 3.5145 38 1 9.5400 2.0599 2.8576 39 1 6.3942 1.4388 -1.6721 40 1 4.4298 1.0080 -3.1891 41 1 2.7982 0.8520 -2.4948 42 1 2.9712 2.8781 -3.9133 43 1 2.6834 3.3127 -2.2117 44 1 4.3150 3.4687 -2.9060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186804449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:11 Heat of formation + Delta-G solvation = -56.470914 kcal Electronic energy + Delta-G solvation = -25169.350117 eV Core-core repulsion = 21599.133881 eV Total energy + Delta-G solvation = -3570.216236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39736 -40.10336 -38.94301 -35.96706 -35.79898 -34.24010 -33.60402 -31.34046 -30.39854 -28.07793 -27.01638 -26.73782 -25.01996 -23.91554 -22.33431 -21.87614 -20.40610 -19.51154 -19.34679 -18.62498 -17.43855 -17.20343 -16.90209 -16.52186 -16.01946 -15.80313 -15.45742 -15.18139 -14.91728 -14.79506 -14.48951 -14.42042 -14.17048 -13.86820 -13.82950 -13.62631 -13.44708 -12.94250 -12.84152 -12.75774 -12.73463 -12.38786 -12.37191 -12.25337 -12.22405 -12.04025 -11.81631 -11.69100 -11.47906 -11.35152 -10.97621 -10.79433 -10.25644 -9.87106 -9.53762 -9.36966 -8.28096 -6.44027 -0.51377 0.48268 0.98955 1.31319 1.47603 1.51692 1.59121 1.82751 2.10831 2.41239 2.93002 3.39615 3.64768 3.69894 4.02671 4.03882 4.07573 4.15341 4.24707 4.35787 4.39370 4.53883 4.55139 4.60170 4.64842 4.71282 4.73506 4.77984 4.84932 4.86979 4.96199 4.98386 5.04010 5.12746 5.18075 5.22295 5.27858 5.36629 5.44307 5.47793 5.56459 5.70038 5.86026 6.61157 6.70046 6.97534 7.25902 7.29575 8.78026 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.003645 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.175911 B = 7679.961894 C = 8965.669221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.050 4.050 4 C -0.191 4.191 5 S 0.215 5.785 6 C -0.294 4.294 7 C 0.601 3.399 8 O -0.591 6.591 9 N -0.638 5.638 10 C 0.089 3.911 11 C 0.226 3.774 12 O -0.577 6.577 13 C -0.560 4.560 14 H 0.075 0.925 15 C 0.040 3.960 16 N -0.905 5.905 17 Si 0.965 3.035 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.268 1.268 21 C 0.110 3.890 22 C -0.048 4.048 23 C -0.125 4.125 24 C -0.058 4.058 25 C -0.145 4.145 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.385 0.615 36 H 0.275 0.725 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.147 0.853 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 -3.942 -11.917 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.089 4.089 4 C -0.311 4.311 5 S 0.487 5.513 6 C -0.414 4.414 7 C 0.393 3.607 8 O -0.476 6.476 9 N -0.370 5.370 10 C -0.034 4.034 11 C 0.185 3.815 12 O -0.386 6.386 13 C -0.598 4.598 14 H 0.093 0.907 15 C -0.163 4.163 16 N -0.543 5.543 17 Si 0.790 3.210 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.012 4.012 22 C -0.083 4.083 23 C -0.137 4.137 24 C -0.098 4.098 25 C -0.203 4.203 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.164 0.836 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.384 -3.970 -11.362 18.000 hybrid contribution 0.667 0.112 0.033 0.677 sum -12.717 -3.858 -11.329 17.463 Atomic orbital electron populations 1.21756 0.93938 1.02404 1.02512 1.21531 0.96990 0.94714 1.02349 1.20383 0.85057 0.98962 1.04480 1.24698 1.02472 1.06706 0.97198 1.83644 0.93103 1.67452 1.07145 1.24316 0.96384 1.21619 0.99079 1.16925 0.87773 0.75947 0.80011 1.90704 1.43771 1.55238 1.57879 1.49679 1.13561 1.70446 1.03282 1.24013 0.97188 1.01381 0.80785 1.19659 0.90345 0.79234 0.92243 1.86089 1.76819 1.19949 1.55751 1.21518 1.18818 1.27734 0.91727 0.90704 1.25705 0.93403 0.93963 1.03236 1.69831 1.13448 1.36267 1.34780 0.85468 0.77703 0.78882 0.78976 1.20276 1.20698 1.19235 1.23373 0.90374 1.00928 0.86556 1.20750 0.96866 0.96536 0.94107 1.18796 0.91088 1.05978 0.97810 1.20307 1.01252 0.98613 0.89604 1.21749 1.01346 0.95216 1.01981 0.92576 0.91469 0.92015 0.91251 0.92874 0.90409 0.87891 0.91453 0.89129 0.76467 0.91529 0.87506 0.92276 0.83552 0.90479 0.89155 0.90386 0.92511 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.84 5.92 30.59 0.18 -1.66 16 3 C -0.05 -0.88 5.04 29.85 0.15 -0.73 16 4 C -0.19 -4.72 5.53 24.68 0.14 -4.59 16 5 S 0.22 6.83 19.85 -56.49 -1.12 5.71 16 6 C -0.29 -11.10 6.45 24.08 0.16 -10.95 16 7 C 0.60 27.38 8.03 86.42 0.69 28.07 16 8 O -0.59 -29.85 17.62 -4.33 -0.08 -29.92 16 9 N -0.64 -28.88 3.69 -864.23 -3.19 -32.07 16 10 C 0.09 3.98 6.64 83.09 0.55 4.53 16 11 C 0.23 10.93 1.40 -11.30 -0.02 10.92 16 12 O -0.58 -29.77 13.56 -148.98 -2.02 -31.79 16 13 C -0.56 -27.54 8.65 25.60 0.22 -27.31 16 14 H 0.07 3.57 7.84 -2.91 -0.02 3.55 16 15 C 0.04 1.90 5.21 84.66 0.44 2.34 16 16 N -0.91 -44.51 11.81 21.45 0.25 -44.26 16 17 Si 0.96 38.54 29.55 68.60 2.03 40.57 16 18 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 21 C 0.11 4.95 8.03 83.17 0.67 5.62 16 22 C -0.05 -1.53 9.78 21.72 0.21 -1.32 16 23 C -0.12 -3.13 5.04 -21.05 -0.11 -3.23 16 24 C -0.06 -1.01 5.54 29.85 0.17 -0.85 16 25 C -0.15 -2.29 9.83 71.98 0.71 -1.59 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 1.04 7.74 -2.38 -0.02 1.03 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.44 6.39 -2.39 -0.02 1.43 16 33 H 0.07 3.03 6.39 -2.39 -0.02 3.01 16 34 H 0.09 3.88 8.10 -2.38 -0.02 3.86 16 35 H 0.38 19.66 7.09 -74.05 -0.53 19.14 16 36 H 0.28 12.82 8.31 -92.70 -0.77 12.05 16 37 H 0.11 4.34 8.10 -2.39 -0.02 4.32 16 38 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.08 1.26 8.10 -2.38 -0.02 1.24 16 41 H 0.09 1.24 7.06 -2.38 -0.02 1.22 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.88 7.24 -2.39 -0.02 0.86 16 44 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -60.44 373.93 1.23 -59.21 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.48 Total: 34.37 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 4.88 Total: -1.82 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -2.94 Total: -76.33 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -2.10 Total: -61.71 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -1.12 Total: 5.71 kcal Total: -60.44 1.23 -59.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186804449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.735 kcal (2) G-P(sol) polarization free energy of solvation -60.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds