Wall clock time and date at job start Tue Mar 31 2020 14:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47067 * 2 1 4 4 O 1.42910 * 109.47153 * 240.00101 * 2 1 3 5 5 C 1.35940 * 117.00106 * 177.79315 * 4 2 1 6 6 C 1.38714 * 120.02894 * 6.00315 * 5 4 2 7 7 C 1.38153 * 119.96757 * 179.78798 * 6 5 4 8 8 C 1.38448 * 120.02991 * 0.48928 * 7 6 5 9 9 F 1.35100 * 119.97194 * 179.72229 * 8 7 6 10 10 C 1.38454 * 120.06213 * 359.74318 * 8 7 6 11 11 C 1.38150 * 120.02855 * 0.02562 * 10 8 7 12 12 C 1.50698 * 109.47361 * 120.00416 * 2 1 3 13 13 O 1.21275 * 120.00429 * 122.58090 * 12 2 1 14 14 N 1.34779 * 119.99390 * 302.58323 * 12 2 1 15 15 C 1.47584 * 134.48910 * 174.77107 * 14 12 2 16 16 C 1.53953 * 86.11623 * 155.36072 * 15 14 12 17 17 O 1.42904 * 113.73828 * 269.15558 * 16 15 14 18 18 C 1.50690 * 113.74107 * 137.95007 * 16 15 14 19 19 H 1.08001 * 120.00253 * 0.02562 * 18 16 15 20 20 C 1.37878 * 119.99803 * 179.97438 * 18 16 15 21 21 N 1.31513 * 120.00052 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00020 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47082 * 269.99948 * 22 20 18 24 24 H 1.48498 * 109.47283 * 29.99926 * 22 20 18 25 25 H 1.48500 * 109.47407 * 149.99882 * 22 20 18 26 26 C 1.47585 * 134.49518 * 354.77277 * 14 12 2 27 27 H 1.08996 * 109.47189 * 305.84399 * 1 2 3 28 28 H 1.09010 * 109.47124 * 65.84559 * 1 2 3 29 29 H 1.09000 * 109.47072 * 185.84252 * 1 2 3 30 30 H 1.09003 * 109.46931 * 187.58339 * 3 2 1 31 31 H 1.09001 * 109.46797 * 307.57823 * 3 2 1 32 32 H 1.08995 * 109.47182 * 67.58199 * 3 2 1 33 33 H 1.07998 * 120.01353 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.98142 * 180.20462 * 7 6 5 35 35 H 1.08004 * 119.98278 * 180.02562 * 10 8 7 36 36 H 1.08000 * 120.01437 * 179.97438 * 11 10 8 37 37 H 1.08999 * 113.76997 * 41.05737 * 15 14 12 38 38 H 1.09001 * 113.86900 * 269.66796 * 15 14 12 39 39 H 0.96698 * 113.99524 * 178.07625 * 17 16 15 40 40 H 0.97004 * 120.00245 * 180.02562 * 21 20 18 41 41 H 1.08991 * 113.76924 * 90.33829 * 26 14 12 42 42 H 1.09000 * 113.76283 * 318.93963 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1669 5 6 3.3532 -0.7225 -1.3447 6 6 4.2017 -0.2453 -0.3565 7 6 5.5703 -0.2995 -0.5367 8 6 6.0949 -0.8206 -1.7072 9 9 7.4334 -0.8679 -1.8846 10 6 5.2491 -1.2928 -2.6964 11 6 3.8802 -1.2442 -2.5169 12 6 2.0324 -0.7105 1.2304 13 8 2.7678 -1.6685 1.1197 14 7 1.6644 -0.2812 2.4538 15 6 1.8745 -0.7735 3.8291 16 6 1.6682 0.6867 4.2714 17 8 2.8780 1.4444 4.3366 18 6 0.8166 0.8320 5.5061 19 1 0.4162 -0.0453 5.9923 20 6 0.5495 2.0850 6.0157 21 7 1.0382 3.1532 5.4245 22 14 -0.5056 2.2652 7.5466 23 1 -1.9317 2.3937 7.1527 24 1 -0.3361 1.0678 8.4084 25 1 -0.0879 3.4774 8.2958 26 6 0.8893 0.8699 2.9562 27 1 -0.3633 0.6018 0.8330 28 1 -0.3634 0.4206 -0.9378 29 1 -0.3633 -1.0223 0.1046 30 1 3.1215 1.4455 -0.1356 31 1 1.5702 1.9939 -0.8145 32 1 1.7916 1.9157 0.9500 33 1 3.7925 0.1650 0.5549 34 1 6.2312 0.0689 0.2340 35 1 5.6598 -1.6994 -3.6089 36 1 3.2206 -1.6122 -3.2888 37 1 2.8810 -1.1499 4.0120 38 1 1.0965 -1.4523 4.1784 39 1 2.7494 2.3699 4.5856 40 1 0.8506 4.0348 5.7832 41 1 -0.1790 0.6741 3.0474 42 1 1.1093 1.8056 2.4421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186839423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:09 Heat of formation + Delta-G solvation = -83.821921 kcal Electronic energy + Delta-G solvation = -28448.136634 eV Core-core repulsion = 24310.521193 eV Total energy + Delta-G solvation = -4137.615441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.72094 -41.21726 -39.25807 -37.71853 -36.73115 -34.28342 -33.29775 -32.29901 -31.14090 -29.41014 -28.56641 -27.36383 -25.56816 -25.48956 -23.63392 -22.62198 -22.06364 -20.03138 -18.97153 -17.91807 -17.48994 -17.19659 -16.62842 -16.25564 -15.80402 -15.45316 -15.25424 -15.14890 -14.54645 -14.49065 -14.15123 -13.89527 -13.55462 -13.46869 -13.27544 -12.85735 -12.75064 -12.65312 -12.39672 -12.25352 -12.16390 -12.04677 -11.78440 -11.60931 -11.48839 -11.13850 -11.06685 -10.82238 -10.65374 -10.57846 -10.37250 -9.69056 -9.30713 -9.01985 -8.86804 -8.53123 -8.09030 -7.79200 -6.49300 -4.59631 1.26993 1.32727 2.82765 3.07380 3.08116 3.17446 3.20655 3.35171 3.68302 4.10745 4.40407 4.54118 4.71316 4.74553 4.77076 4.83359 4.87336 5.20697 5.33848 5.42362 5.47297 5.50172 5.59781 5.60778 5.76101 5.84897 5.92976 5.94322 6.04834 6.06851 6.17746 6.26477 6.28948 6.34698 6.37868 6.46056 6.56607 6.76913 6.96747 7.37125 7.53662 7.71017 8.25585 8.43760 8.49293 9.11973 9.34430 10.57328 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.003431 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.496603 B = 8157.806877 C = 8732.131244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.102 3.898 3 C -0.203 4.203 4 O -0.288 6.288 5 C 0.137 3.863 6 C -0.147 4.147 7 C -0.118 4.118 8 C 0.053 3.947 9 F -0.146 7.146 10 C -0.122 4.122 11 C -0.130 4.130 12 C 0.504 3.496 13 O -0.543 6.543 14 N -0.624 5.624 15 C 0.111 3.889 16 C 0.241 3.759 17 O -0.572 6.572 18 C -0.538 4.538 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.898 5.898 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.271 1.271 25 H -0.283 1.283 26 C 0.069 3.931 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.393 0.607 40 H 0.274 0.726 41 H 0.085 0.915 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -1.777 -11.942 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.061 3.939 3 C -0.260 4.260 4 O -0.201 6.201 5 C 0.091 3.909 6 C -0.166 4.166 7 C -0.137 4.137 8 C 0.034 3.966 9 F -0.125 7.125 10 C -0.141 4.141 11 C -0.149 4.149 12 C 0.292 3.708 13 O -0.422 6.422 14 N -0.358 5.358 15 C -0.011 4.011 16 C 0.199 3.801 17 O -0.385 6.385 18 C -0.576 4.576 19 H 0.090 0.910 20 C -0.129 4.129 21 N -0.538 5.538 22 Si 0.735 3.265 23 H -0.203 1.203 24 H -0.195 1.195 25 H -0.209 1.209 26 C -0.053 4.053 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.249 0.751 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.813 -2.778 -12.475 12.807 hybrid contribution -0.582 0.741 1.113 1.458 sum 0.231 -2.037 -11.363 11.546 Atomic orbital electron populations 1.21808 0.89305 1.03957 1.04137 1.21743 0.96747 0.92115 0.83331 1.22965 1.03805 0.93980 1.05219 1.86146 1.19046 1.73024 1.41868 1.18830 0.82720 0.95538 0.93789 1.21518 0.93099 1.02596 0.99367 1.20949 0.95616 1.00547 0.96589 1.17533 0.77117 1.05415 0.96516 1.91458 1.30387 1.94924 1.95743 1.20796 0.92528 1.01655 0.99137 1.20145 0.94221 1.03975 0.96512 1.20541 0.81713 0.84506 0.84009 1.90748 1.36870 1.28791 1.85783 1.50191 1.52514 1.28662 1.04470 1.23517 1.01271 0.98945 0.77317 1.19813 0.83078 0.86478 0.90713 1.86065 1.31309 1.29029 1.92099 1.21499 1.31315 0.93474 1.11321 0.91001 1.25054 0.95164 0.95403 0.97275 1.69298 1.45193 0.98744 1.40612 0.86326 0.80064 0.78043 0.82084 1.20276 1.19529 1.20867 1.24553 0.96929 0.87178 0.96634 0.89198 0.90429 0.91225 0.89958 0.90450 0.88934 0.83907 0.84721 0.84475 0.84509 0.90996 0.89415 0.75098 0.91556 0.89686 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.62 37.16 0.32 -1.40 16 2 C 0.10 1.58 0.87 -91.77 -0.08 1.50 16 3 C -0.20 -2.84 8.07 37.16 0.30 -2.54 16 4 O -0.29 -4.65 9.63 -39.45 -0.38 -5.03 16 5 C 0.14 2.20 5.56 -39.23 -0.22 1.98 16 6 C -0.15 -2.47 5.53 -39.44 -0.22 -2.69 16 7 C -0.12 -1.83 10.02 -39.53 -0.40 -2.23 16 8 C 0.05 0.78 7.30 -39.42 -0.29 0.49 16 9 F -0.15 -2.12 17.27 2.25 0.04 -2.08 16 10 C -0.12 -1.57 10.02 -39.53 -0.40 -1.97 16 11 C -0.13 -1.76 9.98 -39.44 -0.39 -2.16 16 12 C 0.50 9.59 4.94 -10.99 -0.05 9.53 16 13 O -0.54 -11.96 14.50 -14.34 -0.21 -12.17 16 14 N -0.62 -11.97 3.51 -178.29 -0.63 -12.60 16 15 C 0.11 2.26 8.23 -2.97 -0.02 2.24 16 16 C 0.24 5.33 1.44 -90.84 -0.13 5.20 16 17 O -0.57 -13.72 13.48 -35.23 -0.48 -14.20 16 18 C -0.54 -12.65 8.62 -34.44 -0.30 -12.95 16 19 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.07 1.73 5.40 -17.82 -0.10 1.63 16 21 N -0.90 -21.33 11.08 55.43 0.61 -20.71 16 22 Si 0.91 18.53 29.54 -169.99 -5.02 13.51 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.07 1.32 5.90 -2.97 -0.02 1.30 16 27 H 0.09 1.11 6.27 -51.93 -0.33 0.78 16 28 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.20 4.63 -51.93 -0.24 0.96 16 31 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.09 1.36 4.99 -51.93 -0.26 1.10 16 33 H 0.14 2.61 3.77 -52.49 -0.20 2.41 16 34 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 39 H 0.39 9.54 6.45 45.56 0.29 9.83 16 40 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 41 H 0.09 1.53 7.86 -51.93 -0.41 1.12 16 42 H 0.07 1.37 5.72 -51.93 -0.30 1.07 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -27.11 341.48 -7.26 -34.37 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -4.36 Total: 15.82 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.99 Total: -2.06 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.01 Total: -33.31 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.06 Total: -31.40 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.11 -7.26 -34.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186839423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.449 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds