Wall clock time and date at job start Tue Mar 31 2020 14:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47067 * 2 1 4 4 O 1.42910 * 109.47153 * 240.00101 * 2 1 3 5 5 C 1.35940 * 117.00106 * 177.79315 * 4 2 1 6 6 C 1.38714 * 120.02894 * 6.00315 * 5 4 2 7 7 C 1.38153 * 119.96757 * 179.78798 * 6 5 4 8 8 C 1.38448 * 120.02991 * 0.48928 * 7 6 5 9 9 F 1.35100 * 119.97194 * 179.72229 * 8 7 6 10 10 C 1.38454 * 120.06213 * 359.74318 * 8 7 6 11 11 C 1.38150 * 120.02855 * 0.02562 * 10 8 7 12 12 C 1.50698 * 109.47361 * 120.00416 * 2 1 3 13 13 O 1.21275 * 120.00429 * 122.58090 * 12 2 1 14 14 N 1.34779 * 119.99390 * 302.58323 * 12 2 1 15 15 C 1.47584 * 134.48910 * 174.77107 * 14 12 2 16 16 C 1.53953 * 86.11623 * 155.36072 * 15 14 12 17 17 O 1.42904 * 113.73828 * 269.15558 * 16 15 14 18 18 C 1.50690 * 113.74107 * 137.95007 * 16 15 14 19 19 H 1.08001 * 120.00253 * 0.02562 * 18 16 15 20 20 C 1.37878 * 119.99803 * 179.97438 * 18 16 15 21 21 N 1.31513 * 120.00052 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00020 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47082 * 269.99948 * 22 20 18 24 24 H 1.48498 * 109.47283 * 29.99926 * 22 20 18 25 25 H 1.48500 * 109.47407 * 149.99882 * 22 20 18 26 26 C 1.47585 * 134.49518 * 354.77277 * 14 12 2 27 27 H 1.08996 * 109.47189 * 305.84399 * 1 2 3 28 28 H 1.09010 * 109.47124 * 65.84559 * 1 2 3 29 29 H 1.09000 * 109.47072 * 185.84252 * 1 2 3 30 30 H 1.09003 * 109.46931 * 187.58339 * 3 2 1 31 31 H 1.09001 * 109.46797 * 307.57823 * 3 2 1 32 32 H 1.08995 * 109.47182 * 67.58199 * 3 2 1 33 33 H 1.07998 * 120.01353 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.98142 * 180.20462 * 7 6 5 35 35 H 1.08004 * 119.98278 * 180.02562 * 10 8 7 36 36 H 1.08000 * 120.01437 * 179.97438 * 11 10 8 37 37 H 1.08999 * 113.76997 * 41.05737 * 15 14 12 38 38 H 1.09001 * 113.86900 * 269.66796 * 15 14 12 39 39 H 0.96698 * 113.99524 * 178.07625 * 17 16 15 40 40 H 0.97004 * 120.00245 * 180.02562 * 21 20 18 41 41 H 1.08991 * 113.76924 * 90.33829 * 26 14 12 42 42 H 1.09000 * 113.76283 * 318.93963 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1669 5 6 3.3532 -0.7225 -1.3447 6 6 4.2017 -0.2453 -0.3565 7 6 5.5703 -0.2995 -0.5367 8 6 6.0949 -0.8206 -1.7072 9 9 7.4334 -0.8679 -1.8846 10 6 5.2491 -1.2928 -2.6964 11 6 3.8802 -1.2442 -2.5169 12 6 2.0324 -0.7105 1.2304 13 8 2.7678 -1.6685 1.1197 14 7 1.6644 -0.2812 2.4538 15 6 1.8745 -0.7735 3.8291 16 6 1.6682 0.6867 4.2714 17 8 2.8780 1.4444 4.3366 18 6 0.8166 0.8320 5.5061 19 1 0.4162 -0.0453 5.9923 20 6 0.5495 2.0850 6.0157 21 7 1.0382 3.1532 5.4245 22 14 -0.5056 2.2652 7.5466 23 1 -1.9317 2.3937 7.1527 24 1 -0.3361 1.0678 8.4084 25 1 -0.0879 3.4774 8.2958 26 6 0.8893 0.8699 2.9562 27 1 -0.3633 0.6018 0.8330 28 1 -0.3634 0.4206 -0.9378 29 1 -0.3633 -1.0223 0.1046 30 1 3.1215 1.4455 -0.1356 31 1 1.5702 1.9939 -0.8145 32 1 1.7916 1.9157 0.9500 33 1 3.7925 0.1650 0.5549 34 1 6.2312 0.0689 0.2340 35 1 5.6598 -1.6994 -3.6089 36 1 3.2206 -1.6122 -3.2888 37 1 2.8810 -1.1499 4.0120 38 1 1.0965 -1.4523 4.1784 39 1 2.7494 2.3699 4.5856 40 1 0.8506 4.0348 5.7832 41 1 -0.1790 0.6741 3.0474 42 1 1.1093 1.8056 2.4421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186839423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:08 Heat of formation + Delta-G solvation = -100.038376 kcal Electronic energy + Delta-G solvation = -28448.839832 eV Core-core repulsion = 24310.521193 eV Total energy + Delta-G solvation = -4138.318639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.86185 -42.51995 -40.73172 -39.08684 -38.11165 -35.96590 -34.58085 -34.12247 -32.26460 -30.59847 -30.15394 -28.41983 -27.26954 -27.07957 -24.86183 -23.76697 -23.36172 -21.54022 -20.41764 -19.47432 -18.89501 -18.55505 -17.87270 -17.62295 -17.26456 -16.87913 -16.61186 -16.55570 -15.99513 -15.85597 -15.57913 -15.13412 -14.92243 -14.78924 -14.53374 -14.31707 -13.97797 -13.88317 -13.80206 -13.61144 -13.44109 -13.31550 -13.16429 -13.07476 -12.76295 -12.72056 -12.60260 -12.25299 -12.14640 -11.97301 -11.79967 -11.34409 -10.87892 -10.62750 -10.22410 -10.15757 -9.63535 -9.04598 -8.26619 -6.42933 0.14810 0.16681 1.39888 1.46830 1.51702 1.59310 1.71952 2.03970 2.40969 2.53307 2.95638 3.16879 3.27481 3.58805 3.60057 3.71416 3.75628 3.77638 4.07960 4.11758 4.24421 4.34527 4.39088 4.46742 4.52649 4.59408 4.64732 4.71789 4.73455 4.81546 4.86630 4.93070 5.04327 5.08457 5.10236 5.14274 5.23386 5.24057 5.64710 5.73508 5.93081 6.18086 6.62174 6.73523 6.98181 7.30673 7.47534 8.78981 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.003431 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.496603 B = 8157.806877 C = 8732.131244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.105 3.895 3 C -0.197 4.197 4 O -0.290 6.290 5 C 0.117 3.883 6 C -0.164 4.164 7 C -0.134 4.134 8 C 0.046 3.954 9 F -0.147 7.147 10 C -0.109 4.109 11 C -0.124 4.124 12 C 0.500 3.500 13 O -0.579 6.579 14 N -0.623 5.623 15 C 0.109 3.891 16 C 0.221 3.779 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.071 0.929 20 C 0.038 3.962 21 N -0.914 5.914 22 Si 0.965 3.035 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.285 1.285 26 C 0.087 3.913 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.389 0.611 40 H 0.276 0.724 41 H 0.100 0.900 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -1.787 -13.691 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.064 3.936 3 C -0.254 4.254 4 O -0.203 6.203 5 C 0.072 3.928 6 C -0.183 4.183 7 C -0.153 4.153 8 C 0.026 3.974 9 F -0.126 7.126 10 C -0.128 4.128 11 C -0.142 4.142 12 C 0.290 3.710 13 O -0.460 6.460 14 N -0.356 5.356 15 C -0.014 4.014 16 C 0.179 3.821 17 O -0.400 6.400 18 C -0.594 4.594 19 H 0.089 0.911 20 C -0.163 4.163 21 N -0.554 5.554 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.211 1.211 26 C -0.035 4.035 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.192 0.808 36 H 0.185 0.815 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.467 -2.785 -14.234 14.511 hybrid contribution -0.090 0.708 1.652 1.799 sum -0.557 -2.077 -12.582 12.765 Atomic orbital electron populations 1.21876 0.86955 1.04187 1.05908 1.21866 0.98290 0.92071 0.81367 1.22917 1.03435 0.93241 1.05766 1.86136 1.19146 1.73339 1.41680 1.19142 0.82658 0.96359 0.94628 1.21369 0.93732 1.03979 0.99182 1.21036 0.95418 1.01315 0.97489 1.17680 0.77366 1.05632 0.96681 1.91456 1.30447 1.94942 1.95712 1.21191 0.92000 0.99925 0.99640 1.20541 0.94935 1.02602 0.96129 1.21293 0.80782 0.84163 0.84738 1.90718 1.38355 1.30624 1.86330 1.50148 1.52567 1.28604 1.04325 1.23513 1.00898 0.98441 0.78505 1.20086 0.82863 0.87148 0.91965 1.86056 1.32783 1.28892 1.92254 1.21712 1.31757 0.93719 1.12213 0.91120 1.25658 0.96091 0.95162 0.99407 1.69355 1.45659 0.98974 1.41431 0.85447 0.78969 0.77447 0.79112 1.19492 1.19884 1.21109 1.24351 0.97152 0.87356 0.94598 0.88767 0.87558 0.91522 0.91004 0.87579 0.89848 0.86110 0.84747 0.80847 0.81537 0.92719 0.87770 0.75602 0.91389 0.88208 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.62 71.98 0.62 -2.45 16 2 C 0.11 3.16 0.87 -11.54 -0.01 3.15 16 3 C -0.20 -5.32 8.07 71.98 0.58 -4.74 16 4 O -0.29 -8.94 9.63 -73.85 -0.71 -9.65 16 5 C 0.12 3.65 5.56 22.49 0.12 3.78 16 6 C -0.16 -5.59 5.53 22.36 0.12 -5.47 16 7 C -0.13 -4.22 10.02 22.30 0.22 -4.00 16 8 C 0.05 1.28 7.30 22.37 0.16 1.44 16 9 F -0.15 -4.08 17.27 44.97 0.78 -3.31 16 10 C -0.11 -2.51 10.02 22.30 0.22 -2.28 16 11 C -0.12 -3.04 9.98 22.36 0.22 -2.82 16 12 C 0.50 19.13 4.94 87.66 0.43 19.56 16 13 O -0.58 -26.07 14.50 16.01 0.23 -25.84 16 14 N -0.62 -24.04 3.51 -840.19 -2.95 -26.99 16 15 C 0.11 4.52 8.23 86.48 0.71 5.23 16 16 C 0.22 9.86 1.44 -10.88 -0.02 9.85 16 17 O -0.59 -28.96 13.48 -148.98 -2.01 -30.97 16 18 C -0.56 -26.14 8.62 25.60 0.22 -25.92 16 19 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 20 C 0.04 1.75 5.40 84.66 0.46 2.21 16 21 N -0.91 -43.25 11.08 21.45 0.24 -43.01 16 22 Si 0.96 37.51 29.54 68.60 2.03 39.54 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 25 H -0.29 -11.13 7.11 99.48 0.71 -10.42 16 26 C 0.09 3.28 5.90 86.48 0.51 3.79 16 27 H 0.09 2.10 6.27 -2.39 -0.01 2.08 16 28 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.11 4.63 -2.39 -0.01 2.10 16 31 H 0.11 2.22 8.13 -2.39 -0.02 2.20 16 32 H 0.08 2.40 4.99 -2.39 -0.01 2.39 16 33 H 0.12 4.60 3.77 -2.91 -0.01 4.59 16 34 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.05 2.41 8.14 -2.39 -0.02 2.40 16 38 H 0.10 3.92 8.09 -2.39 -0.02 3.90 16 39 H 0.39 19.38 6.45 -74.06 -0.48 18.90 16 40 H 0.28 12.45 8.31 -92.71 -0.77 11.68 16 41 H 0.10 3.45 7.86 -2.39 -0.02 3.43 16 42 H 0.08 2.91 5.72 -2.39 -0.01 2.90 16 Total: -1.00 -58.61 341.48 2.79 -55.81 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: 0.60 Total: 43.08 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 4.59 Total: 1.33 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -2.71 Total: -70.00 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -2.49 Total: -66.46 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.31 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -58.61 2.79 -55.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186839423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.224 kcal (2) G-P(sol) polarization free energy of solvation -58.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds