Wall clock time and date at job start Tue Mar 31 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47012 * 2 1 4 4 C 1.38261 * 119.99917 * 269.27695 * 3 2 1 5 5 C 1.38208 * 119.99590 * 180.27390 * 4 3 2 6 6 C 1.38256 * 120.00210 * 359.75203 * 5 4 3 7 7 C 1.38210 * 120.00065 * 359.97106 * 6 5 4 8 8 C 1.38212 * 119.99790 * 89.02346 * 3 2 1 9 9 S 1.76199 * 120.00453 * 359.97438 * 8 3 2 10 10 O 1.42105 * 106.40173 * 80.20769 * 9 8 3 11 11 O 1.42099 * 106.39955 * 307.29226 * 9 8 3 12 12 N 1.65594 * 107.21942 * 193.75045 * 9 8 3 13 13 C 1.36934 * 120.00018 * 271.70280 * 12 9 8 14 14 H 1.07996 * 120.00063 * 26.40388 * 13 12 9 15 15 C 1.38820 * 120.00102 * 206.40593 * 13 12 9 16 16 N 1.31614 * 119.99859 * 14.07529 * 15 13 12 17 17 Si 1.86800 * 119.99828 * 194.08277 * 15 13 12 18 18 H 1.48494 * 109.47072 * 89.99751 * 17 15 13 19 19 H 1.48502 * 109.46839 * 209.99869 * 17 15 13 20 20 H 1.48495 * 109.47075 * 329.99386 * 17 15 13 21 21 C 1.46501 * 119.99711 * 91.70551 * 12 9 8 22 22 C 1.55231 * 110.58428 * 345.44142 * 21 12 9 23 23 C 1.54888 * 102.58874 * 203.34022 * 22 21 12 24 24 C 1.54260 * 104.31434 * 37.92895 * 23 22 21 25 25 C 1.53878 * 106.59885 * 336.32890 * 24 23 22 26 26 H 1.08999 * 109.47414 * 64.57988 * 1 2 3 27 27 H 1.08999 * 109.47379 * 184.57532 * 1 2 3 28 28 H 1.09006 * 109.47261 * 304.58090 * 1 2 3 29 29 H 1.09002 * 109.46877 * 239.99853 * 2 1 3 30 30 H 1.09001 * 109.46980 * 120.00021 * 2 1 3 31 31 H 1.07998 * 120.00050 * 0.04672 * 4 3 2 32 32 H 1.07997 * 119.99784 * 179.76773 * 5 4 3 33 33 H 1.08003 * 120.00340 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.99950 * 180.02562 * 7 6 5 35 35 H 0.96997 * 120.00198 * 180.02562 * 16 15 13 36 36 H 1.09006 * 110.43113 * 108.03181 * 21 12 9 37 37 H 1.09006 * 110.89735 * 85.04979 * 22 21 12 38 38 H 1.09001 * 110.76547 * 321.57322 * 22 21 12 39 39 H 1.09002 * 110.48459 * 279.18905 * 23 22 21 40 40 H 1.08999 * 110.48811 * 156.67810 * 23 22 21 41 41 H 1.09007 * 110.02916 * 95.60744 * 24 23 22 42 42 H 1.09000 * 110.03676 * 216.98996 * 24 23 22 43 43 H 1.09000 * 110.03314 * 119.28030 * 25 24 23 44 44 H 1.09002 * 110.02768 * 240.66336 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2770 2.0676 -1.1973 5 6 2.7430 3.3687 -1.1971 6 6 2.9597 4.0253 0.0001 7 6 2.7097 3.3808 1.1969 8 6 2.2434 2.0792 1.1968 9 16 1.9246 1.2575 2.7225 10 8 3.0531 0.4323 2.9773 11 8 0.5979 0.7556 2.6383 12 7 1.9131 2.4131 3.9086 13 6 3.0792 2.7624 4.5355 14 1 4.0235 2.6430 4.0252 15 6 3.0478 3.2700 5.8272 16 7 1.9535 3.1614 6.5505 17 14 4.5584 4.1074 6.5387 18 1 4.5096 5.5596 6.2327 19 1 4.5854 3.9122 8.0106 20 1 5.7811 3.5158 5.9385 21 6 0.6551 3.0616 4.2870 22 6 -0.4417 2.7880 3.2232 23 6 -1.4200 3.9699 3.4351 24 6 -0.5040 5.1734 3.7389 25 6 0.8155 4.5959 4.2805 26 1 -0.3634 0.4411 -0.9281 27 1 -0.3634 -1.0244 0.0820 28 1 -0.3634 0.5833 0.8461 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1074 1.5548 -2.1325 32 1 2.9377 3.8726 -2.1323 33 1 3.3243 5.0419 0.0003 34 1 2.8786 3.8938 2.1321 35 1 1.9314 3.5164 7.4529 36 1 0.3292 2.7164 5.2682 37 1 -0.9386 1.8365 3.4128 38 1 -0.0198 2.8111 2.2184 39 1 -2.0811 3.7713 4.2787 40 1 -2.0009 4.1512 2.5308 41 1 -0.3170 5.7399 2.8265 42 1 -0.9670 5.8153 4.4883 43 1 1.6428 4.8821 3.6310 44 1 0.9935 4.9578 5.2931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188135776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:13 Heat of formation + Delta-G solvation = -41.473541 kcal Electronic energy + Delta-G solvation = -27722.657012 eV Core-core repulsion = 24153.091111 eV Total energy + Delta-G solvation = -3569.565901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.15680 -37.88384 -36.19672 -34.99019 -34.14717 -33.73921 -31.21748 -30.78543 -29.13300 -27.80788 -26.81966 -24.07960 -23.76594 -22.86482 -20.98974 -20.13427 -19.43106 -18.40172 -17.39960 -16.95657 -16.17207 -15.47739 -15.17394 -15.06678 -14.68123 -14.24842 -14.22104 -13.87233 -13.59141 -13.41394 -13.08143 -12.90396 -12.58775 -12.13748 -12.03655 -11.80265 -11.64241 -11.57331 -11.29083 -11.17483 -11.13956 -10.92026 -10.79237 -10.53791 -10.46194 -10.34593 -10.25412 -10.06294 -9.93338 -9.83998 -9.58422 -9.50253 -9.03183 -8.90805 -8.56158 -7.79620 -6.09827 -3.88461 1.19184 1.48530 1.55973 3.22786 3.30999 3.33937 3.77577 4.05533 4.42218 4.59088 4.81473 4.96765 5.12256 5.15791 5.25256 5.43013 5.45823 5.49499 5.55520 5.56931 5.66945 5.75529 5.77499 6.01613 6.11328 6.13293 6.14812 6.21718 6.24839 6.35878 6.43778 6.45095 6.52651 6.57445 6.59613 6.62060 6.74577 6.80389 6.99331 7.03764 7.14282 7.22870 7.52626 7.63315 7.77930 8.52081 9.06344 9.43059 10.89676 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.006453 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.579454 B = 4338.326037 C = 4673.203694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.011 3.989 4 C -0.145 4.145 5 C -0.079 4.079 6 C -0.149 4.149 7 C -0.020 4.020 8 C -0.659 4.659 9 S 2.669 3.331 10 O -0.971 6.971 11 O -0.975 6.975 12 N -0.845 5.845 13 C -0.316 4.316 14 H 0.093 0.907 15 C 0.048 3.952 16 N -0.874 5.874 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.178 3.822 22 C -0.150 4.150 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.112 4.112 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.263 0.737 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 2.471 -11.085 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C 0.010 3.990 4 C -0.164 4.164 5 C -0.097 4.097 6 C -0.168 4.168 7 C -0.039 4.039 8 C -0.742 4.742 9 S 2.760 3.240 10 O -0.961 6.961 11 O -0.965 6.965 12 N -0.679 5.679 13 C -0.447 4.447 14 H 0.111 0.889 15 C -0.158 4.158 16 N -0.513 5.513 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.195 1.195 21 C 0.071 3.929 22 C -0.189 4.189 23 C -0.159 4.159 24 C -0.165 4.165 25 C -0.151 4.151 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.475 1.596 -10.859 11.513 hybrid contribution 1.084 1.268 -0.193 1.680 sum -2.391 2.864 -11.052 11.665 Atomic orbital electron populations 1.21975 0.92884 1.03042 1.03498 1.20865 0.98257 0.92141 1.03257 1.19456 0.92479 0.95077 0.92017 1.21009 1.02598 0.95529 0.97256 1.21274 0.95966 0.94481 0.97999 1.21241 1.02569 1.00328 0.92679 1.21228 0.90787 0.92186 0.99672 1.31512 1.13914 1.07617 1.21111 1.02616 0.73410 0.74180 0.73761 1.93496 1.53351 1.64993 1.84231 1.93504 1.36918 1.79023 1.87015 1.52716 1.12874 1.54547 1.47744 1.19000 0.84577 1.43668 0.97412 0.88892 1.25055 0.97216 0.98355 0.95124 1.69946 1.27230 1.44813 1.09356 0.86219 0.82294 0.79537 0.78399 1.20567 1.21041 1.19541 1.21758 0.81195 0.91645 0.98269 1.23444 0.97997 0.98950 0.98495 1.22310 0.97661 0.95650 1.00292 1.22194 0.97289 0.97358 0.99636 1.22337 0.94812 0.96392 1.01608 0.93302 0.92280 0.88447 0.90137 0.91354 0.85881 0.86037 0.85724 0.83362 0.92605 0.87374 0.88727 0.92778 0.91946 0.92805 0.93185 0.92902 0.92399 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 2 C -0.11 -1.70 5.33 -27.88 -0.15 -1.85 16 3 C 0.01 0.19 5.13 -104.62 -0.54 -0.35 16 4 C -0.15 -2.07 9.70 -39.58 -0.38 -2.45 16 5 C -0.08 -1.05 10.05 -39.59 -0.40 -1.45 16 6 C -0.15 -2.21 10.05 -39.58 -0.40 -2.60 16 7 C -0.02 -0.36 9.57 -39.58 -0.38 -0.74 16 8 C -0.66 -12.70 4.92 -39.58 -0.19 -12.90 16 9 S 2.67 59.76 3.60 -107.50 -0.39 59.37 16 10 O -0.97 -25.06 16.94 -57.17 -0.97 -26.03 16 11 O -0.97 -21.16 9.85 -57.17 -0.56 -21.72 16 12 N -0.84 -19.82 2.30 -51.64 -0.12 -19.94 16 13 C -0.32 -7.96 7.60 -15.06 -0.11 -8.08 16 14 H 0.09 2.34 7.80 -52.49 -0.41 1.93 16 15 C 0.05 1.20 4.45 -17.43 -0.08 1.12 16 16 N -0.87 -22.38 9.72 55.49 0.54 -21.84 16 17 Si 0.91 19.88 29.58 -169.99 -5.03 14.85 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 C 0.18 3.89 2.65 -66.09 -0.18 3.71 16 22 C -0.15 -2.88 4.40 -24.55 -0.11 -2.99 16 23 C -0.12 -1.98 6.82 -25.08 -0.17 -2.15 16 24 C -0.13 -2.10 6.80 -25.61 -0.17 -2.28 16 25 C -0.11 -2.24 5.15 -25.61 -0.13 -2.38 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 1.66 5.64 -51.93 -0.29 1.37 16 29 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.07 1.21 6.44 -51.93 -0.33 0.87 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.15 2.72 5.80 -52.49 -0.30 2.42 16 35 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.11 2.66 6.46 -51.93 -0.34 2.32 16 37 H 0.09 1.88 6.77 -51.93 -0.35 1.53 16 38 H 0.05 1.03 5.96 -51.93 -0.31 0.72 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.16 6.96 -51.93 -0.36 0.80 16 44 H 0.07 1.57 6.92 -51.93 -0.36 1.21 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -28.74 343.58 -10.81 -39.54 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.42 Total: 7.93 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: -3.04 Total: -37.35 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.42 Total: -41.77 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.53 Total: -47.75 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 16 Polarization: 59.76 SS G_CDS: -0.39 Total: 59.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.74 -10.81 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188135776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.931 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds