Wall clock time and date at job start Tue Mar 31 2020 13:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47012 * 2 1 4 4 C 1.38261 * 119.99917 * 269.27695 * 3 2 1 5 5 C 1.38208 * 119.99590 * 180.27390 * 4 3 2 6 6 C 1.38256 * 120.00210 * 359.75203 * 5 4 3 7 7 C 1.38210 * 120.00065 * 359.97106 * 6 5 4 8 8 C 1.38212 * 119.99790 * 89.02346 * 3 2 1 9 9 S 1.76199 * 120.00453 * 359.97438 * 8 3 2 10 10 O 1.42105 * 106.40173 * 80.20769 * 9 8 3 11 11 O 1.42099 * 106.39955 * 307.29226 * 9 8 3 12 12 N 1.65594 * 107.21942 * 193.75045 * 9 8 3 13 13 C 1.36934 * 120.00018 * 271.70280 * 12 9 8 14 14 H 1.07996 * 120.00063 * 26.40388 * 13 12 9 15 15 C 1.38820 * 120.00102 * 206.40593 * 13 12 9 16 16 N 1.31614 * 119.99859 * 14.07529 * 15 13 12 17 17 Si 1.86800 * 119.99828 * 194.08277 * 15 13 12 18 18 H 1.48494 * 109.47072 * 89.99751 * 17 15 13 19 19 H 1.48502 * 109.46839 * 209.99869 * 17 15 13 20 20 H 1.48495 * 109.47075 * 329.99386 * 17 15 13 21 21 C 1.46501 * 119.99711 * 91.70551 * 12 9 8 22 22 C 1.55231 * 110.58428 * 345.44142 * 21 12 9 23 23 C 1.54888 * 102.58874 * 203.34022 * 22 21 12 24 24 C 1.54260 * 104.31434 * 37.92895 * 23 22 21 25 25 C 1.53878 * 106.59885 * 336.32890 * 24 23 22 26 26 H 1.08999 * 109.47414 * 64.57988 * 1 2 3 27 27 H 1.08999 * 109.47379 * 184.57532 * 1 2 3 28 28 H 1.09006 * 109.47261 * 304.58090 * 1 2 3 29 29 H 1.09002 * 109.46877 * 239.99853 * 2 1 3 30 30 H 1.09001 * 109.46980 * 120.00021 * 2 1 3 31 31 H 1.07998 * 120.00050 * 0.04672 * 4 3 2 32 32 H 1.07997 * 119.99784 * 179.76773 * 5 4 3 33 33 H 1.08003 * 120.00340 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.99950 * 180.02562 * 7 6 5 35 35 H 0.96997 * 120.00198 * 180.02562 * 16 15 13 36 36 H 1.09006 * 110.43113 * 108.03181 * 21 12 9 37 37 H 1.09006 * 110.89735 * 85.04979 * 22 21 12 38 38 H 1.09001 * 110.76547 * 321.57322 * 22 21 12 39 39 H 1.09002 * 110.48459 * 279.18905 * 23 22 21 40 40 H 1.08999 * 110.48811 * 156.67810 * 23 22 21 41 41 H 1.09007 * 110.02916 * 95.60744 * 24 23 22 42 42 H 1.09000 * 110.03676 * 216.98996 * 24 23 22 43 43 H 1.09000 * 110.03314 * 119.28030 * 25 24 23 44 44 H 1.09002 * 110.02768 * 240.66336 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2770 2.0676 -1.1973 5 6 2.7430 3.3687 -1.1971 6 6 2.9597 4.0253 0.0001 7 6 2.7097 3.3808 1.1969 8 6 2.2434 2.0792 1.1968 9 16 1.9246 1.2575 2.7225 10 8 3.0531 0.4323 2.9773 11 8 0.5979 0.7556 2.6383 12 7 1.9131 2.4131 3.9086 13 6 3.0792 2.7624 4.5355 14 1 4.0235 2.6430 4.0252 15 6 3.0478 3.2700 5.8272 16 7 1.9535 3.1614 6.5505 17 14 4.5584 4.1074 6.5387 18 1 4.5096 5.5596 6.2327 19 1 4.5854 3.9122 8.0106 20 1 5.7811 3.5158 5.9385 21 6 0.6551 3.0616 4.2870 22 6 -0.4417 2.7880 3.2232 23 6 -1.4200 3.9699 3.4351 24 6 -0.5040 5.1734 3.7389 25 6 0.8155 4.5959 4.2805 26 1 -0.3634 0.4411 -0.9281 27 1 -0.3634 -1.0244 0.0820 28 1 -0.3634 0.5833 0.8461 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1074 1.5548 -2.1325 32 1 2.9377 3.8726 -2.1323 33 1 3.3243 5.0419 0.0003 34 1 2.8786 3.8938 2.1321 35 1 1.9314 3.5164 7.4529 36 1 0.3292 2.7164 5.2682 37 1 -0.9386 1.8365 3.4128 38 1 -0.0198 2.8111 2.2184 39 1 -2.0811 3.7713 4.2787 40 1 -2.0009 4.1512 2.5308 41 1 -0.3170 5.7399 2.8265 42 1 -0.9670 5.8153 4.4883 43 1 1.6428 4.8821 3.6310 44 1 0.9935 4.9578 5.2931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188135776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:12 Heat of formation + Delta-G solvation = -57.066462 kcal Electronic energy + Delta-G solvation = -27723.333172 eV Core-core repulsion = 24153.091111 eV Total energy + Delta-G solvation = -3570.242061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.37143 -39.50418 -37.97267 -36.74988 -35.80120 -35.04948 -33.00699 -32.09214 -30.31633 -29.35011 -28.45017 -25.87881 -25.01686 -24.11544 -22.28990 -21.61363 -21.01631 -20.09400 -18.96688 -18.62138 -17.76357 -16.89223 -16.71298 -16.48109 -16.38968 -15.90196 -15.52947 -15.45992 -14.89583 -14.67890 -14.59077 -14.18931 -14.08727 -13.65770 -13.37562 -13.32851 -13.06207 -13.03924 -13.00005 -12.95096 -12.74647 -12.57476 -12.24135 -12.04962 -11.97333 -11.84892 -11.75568 -11.71256 -11.40345 -11.31553 -11.16385 -11.11465 -10.76077 -10.21528 -9.75621 -9.66760 -8.01579 -5.84800 -0.21402 -0.05197 0.36798 1.45952 1.48437 1.57103 2.29596 2.58840 2.63966 2.91086 3.22686 3.61938 3.78570 3.91339 3.94985 4.05151 4.06494 4.16491 4.19850 4.38198 4.40941 4.51171 4.55278 4.63774 4.71580 4.85067 4.93936 4.96142 4.98946 5.01613 5.02991 5.08117 5.18866 5.24505 5.27708 5.37330 5.39431 5.42499 5.47265 5.54617 5.60466 5.77428 5.87824 5.97961 5.98652 6.62865 7.14563 7.50390 8.96050 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.006453 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.579454 B = 4338.326037 C = 4673.203694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.006 4.006 4 C -0.139 4.139 5 C -0.063 4.063 6 C -0.148 4.148 7 C -0.042 4.042 8 C -0.675 4.675 9 S 2.666 3.334 10 O -1.022 7.022 11 O -0.981 6.981 12 N -0.858 5.858 13 C -0.326 4.326 14 H 0.083 0.917 15 C 0.009 3.991 16 N -0.895 5.895 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.175 3.825 22 C -0.144 4.144 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.106 4.106 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.035 0.965 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 4.464 -14.682 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.008 4.008 4 C -0.158 4.158 5 C -0.081 4.081 6 C -0.167 4.167 7 C -0.061 4.061 8 C -0.763 4.763 9 S 2.764 3.236 10 O -1.013 7.013 11 O -0.971 6.971 12 N -0.691 5.691 13 C -0.457 4.457 14 H 0.100 0.900 15 C -0.194 4.194 16 N -0.535 5.535 17 Si 0.787 3.213 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.068 3.932 22 C -0.183 4.183 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.145 4.145 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.054 0.946 31 H 0.181 0.819 32 H 0.187 0.813 33 H 0.172 0.828 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.820 3.562 -14.404 15.322 hybrid contribution 1.197 0.598 0.803 1.561 sum -2.623 4.161 -13.601 14.463 Atomic orbital electron populations 1.21951 0.92238 1.03458 1.03632 1.20990 0.98925 0.91897 1.03369 1.19743 0.93020 0.95634 0.92356 1.21474 1.00934 0.96011 0.97337 1.21844 0.93092 0.93941 0.99185 1.21604 1.01549 1.01592 0.91910 1.21229 0.92208 0.91935 1.00703 1.30748 1.17584 1.08537 1.19461 1.02319 0.72638 0.73918 0.74675 1.93417 1.55058 1.67146 1.85644 1.93496 1.36637 1.79569 1.87441 1.52726 1.12838 1.54386 1.49168 1.19077 0.85078 1.43700 0.97809 0.89972 1.25736 0.99564 0.98871 0.95259 1.70092 1.28549 1.45382 1.09435 0.85404 0.79305 0.79239 0.77365 1.19117 1.21155 1.19740 1.21666 0.81278 0.92806 0.97447 1.23329 0.97668 0.99738 0.97594 1.22311 0.97137 0.93905 1.01877 1.22146 0.95166 0.97556 1.00802 1.22208 0.96880 0.95051 1.00410 0.90530 0.91290 0.91315 0.86590 0.94632 0.81943 0.81279 0.82798 0.85086 0.92706 0.91039 0.90202 0.92592 0.91376 0.90049 0.91140 0.91391 0.92883 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.48 71.98 0.68 -3.74 16 2 C -0.11 -3.51 5.33 29.85 0.16 -3.35 16 3 C -0.01 -0.19 5.13 -19.86 -0.10 -0.29 16 4 C -0.14 -3.33 9.70 22.27 0.22 -3.11 16 5 C -0.06 -1.34 10.05 22.27 0.22 -1.12 16 6 C -0.15 -3.87 10.05 22.27 0.22 -3.65 16 7 C -0.04 -1.48 9.57 22.27 0.21 -1.26 16 8 C -0.67 -26.26 4.92 22.27 0.11 -26.15 16 9 S 2.67 126.68 3.60 -56.49 -0.20 126.47 16 10 O -1.02 -56.72 16.94 -128.00 -2.17 -58.89 16 11 O -0.98 -45.24 9.85 -128.00 -1.26 -46.51 16 12 N -0.86 -42.67 2.30 -317.29 -0.73 -43.40 16 13 C -0.33 -17.32 7.60 84.04 0.64 -16.68 16 14 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 15 C 0.01 0.47 4.45 84.86 0.38 0.85 16 16 N -0.89 -48.01 9.72 21.65 0.21 -47.80 16 17 Si 0.96 41.86 29.58 68.60 2.03 43.89 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.17 8.00 2.65 46.19 0.12 8.12 16 22 C -0.14 -5.67 4.40 32.00 0.14 -5.53 16 23 C -0.11 -3.59 6.82 31.67 0.22 -3.37 16 24 C -0.12 -3.76 6.80 31.32 0.21 -3.55 16 25 C -0.11 -4.33 5.15 31.32 0.16 -4.17 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.36 5.64 -2.38 -0.01 2.35 16 29 H 0.12 2.64 8.08 -2.39 -0.02 2.62 16 30 H 0.03 1.30 6.44 -2.39 -0.02 1.29 16 31 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 33 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.13 4.99 5.80 -2.91 -0.02 4.97 16 35 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 36 H 0.07 3.77 6.46 -2.38 -0.02 3.75 16 37 H 0.08 3.33 6.77 -2.38 -0.02 3.31 16 38 H 0.06 2.17 5.96 -2.39 -0.01 2.15 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 41 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 2.18 6.96 -2.39 -0.02 2.16 16 44 H 0.05 2.24 6.92 -2.39 -0.02 2.22 16 Total: -1.00 -67.70 343.58 2.47 -65.23 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.00 Total: 28.01 kcal Atomic # 6 Polarization: -70.61 SS G_CDS: 3.60 Total: -67.02 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -0.52 Total: -91.20 kcal Atomic # 8 Polarization: -101.96 SS G_CDS: -3.43 Total: -105.39 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 126.68 SS G_CDS: -0.20 Total: 126.47 kcal Total: -67.70 2.47 -65.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188135776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.163 kcal (2) G-P(sol) polarization free energy of solvation -67.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds