Wall clock time and date at job start Tue Mar 31 2020 14:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47656 * 2 1 4 4 C 1.53001 * 109.47409 * 154.38919 * 3 2 1 5 5 C 1.53002 * 109.47087 * 34.39273 * 3 2 1 6 6 N 1.46492 * 109.47643 * 274.39298 * 3 2 1 7 7 C 1.46497 * 120.00715 * 130.44496 * 6 3 2 8 8 C 1.50695 * 109.47466 * 263.44913 * 7 6 3 9 9 H 1.08004 * 120.00144 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00052 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99929 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00076 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47116 * 90.00312 * 12 10 8 14 14 H 1.48500 * 109.47193 * 210.00411 * 12 10 8 15 15 H 1.48501 * 109.46945 * 330.00420 * 12 10 8 16 16 C 1.34781 * 119.99800 * 310.45345 * 6 3 2 17 17 O 1.21681 * 119.99965 * 186.20206 * 16 6 3 18 18 C 1.46767 * 119.99886 * 6.19057 * 16 6 3 19 19 C 1.34726 * 124.99764 * 143.66862 * 18 16 6 20 20 C 1.39215 * 113.67258 * 180.02562 * 19 18 16 21 21 C 1.46544 * 123.04117 * 180.02562 * 20 19 18 22 22 C 1.50689 * 120.00189 * 180.02562 * 21 20 19 23 23 O 1.21337 * 119.99362 * 0.02562 * 21 20 19 24 24 C 1.37074 * 113.92645 * 0.02562 * 20 19 18 25 25 S 1.70589 * 110.49343 * 0.26152 * 24 20 19 26 26 H 1.08991 * 109.47839 * 185.16778 * 1 2 3 27 27 H 1.09006 * 109.46917 * 305.17507 * 1 2 3 28 28 H 1.09004 * 109.46886 * 65.16692 * 1 2 3 29 29 H 1.09002 * 109.46878 * 239.99739 * 2 1 3 30 30 H 1.09004 * 109.46909 * 120.00292 * 2 1 3 31 31 H 1.09000 * 109.47461 * 209.24731 * 4 3 2 32 32 H 1.09003 * 109.46954 * 329.25030 * 4 3 2 33 33 H 1.09000 * 109.47058 * 89.24407 * 4 3 2 34 34 H 1.09001 * 109.47170 * 298.81331 * 5 3 2 35 35 H 1.08999 * 109.47488 * 58.81296 * 5 3 2 36 36 H 1.08998 * 109.47594 * 178.81492 * 5 3 2 37 37 H 1.09004 * 109.46787 * 23.45040 * 7 6 3 38 38 H 1.09001 * 109.47395 * 143.44183 * 7 6 3 39 39 H 0.97002 * 120.00183 * 180.02562 * 11 10 8 40 40 H 1.07999 * 123.16533 * 0.07296 * 19 18 16 41 41 H 1.09000 * 109.47368 * 359.97438 * 22 21 20 42 42 H 1.09000 * 109.47317 * 119.99975 * 22 21 20 43 43 H 1.09006 * 109.47346 * 240.00087 * 22 21 20 44 44 H 1.07994 * 124.75710 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.4365 1.4896 0.6235 5 6 1.0879 2.3201 0.8148 6 7 2.1032 1.9381 -1.3770 7 6 1.5058 3.2315 -1.7182 8 6 0.1229 3.0145 -2.2763 9 1 -0.2714 2.0133 -2.3681 10 6 -0.6390 4.0943 -2.6697 11 7 -1.8457 3.9049 -3.1572 12 14 0.0427 5.8261 -2.5102 13 1 0.7590 6.1930 -3.7582 14 1 -1.0736 6.7785 -2.2819 15 1 0.9847 5.8836 -1.3636 16 6 2.7109 1.2042 -2.3303 17 8 2.8634 1.6633 -3.4468 18 6 3.1889 -0.1487 -2.0215 19 6 3.1575 -1.1924 -2.8729 20 6 3.6716 -2.3687 -2.3344 21 6 3.7371 -3.6277 -3.0814 22 6 4.3072 -4.8614 -2.4304 23 8 3.3322 -3.6767 -4.2242 24 6 4.1111 -2.2429 -1.0421 25 16 3.8777 -0.6477 -0.4845 26 1 -0.3634 -1.0234 0.0926 27 1 -0.3633 0.5920 0.8401 28 1 -0.3633 0.4316 -0.9327 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.5913 2.4600 1.0952 32 1 3.5267 0.7029 1.3727 33 1 4.1864 1.3393 -0.1531 34 1 0.0981 2.3033 0.3586 35 1 1.0247 1.9388 1.8340 36 1 1.4625 3.3435 0.8325 37 1 1.4434 3.8503 -0.8230 38 1 2.1240 3.7321 -2.4634 39 1 -2.3816 4.6644 -3.4343 40 1 2.7706 -1.1228 -3.8788 41 1 4.6166 -4.6250 -1.4123 42 1 3.5486 -5.6437 -2.4076 43 1 5.1693 -5.2077 -3.0006 44 1 4.5412 -3.0426 -0.4575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189916653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:00 Heat of formation + Delta-G solvation = -0.667945 kcal Electronic energy + Delta-G solvation = -26653.852737 eV Core-core repulsion = 23086.056299 eV Total energy + Delta-G solvation = -3567.796438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33012 -39.53565 -37.30452 -36.57143 -33.42688 -32.01726 -31.50391 -30.15002 -29.64241 -27.87948 -26.88447 -25.36909 -23.63737 -23.13503 -21.57613 -20.32500 -19.04074 -18.49416 -17.00456 -16.98083 -16.41643 -15.64592 -15.52334 -15.16136 -14.93994 -14.70658 -14.60023 -14.06065 -14.00670 -13.85086 -13.22084 -12.89715 -12.77608 -12.67363 -12.48123 -12.37833 -12.31735 -12.25447 -11.81554 -11.62984 -11.43374 -11.28520 -11.02299 -10.85653 -10.65769 -10.46483 -10.33881 -10.25347 -10.13145 -9.69411 -9.51858 -9.22336 -8.74247 -8.58433 -8.03804 -7.78417 -6.08561 -4.06838 0.46623 1.43006 1.60030 1.88872 3.01440 3.26733 3.32172 3.35484 3.44342 3.72979 4.12659 4.38318 4.70390 4.75683 4.87952 4.93355 5.00498 5.14485 5.22187 5.25262 5.26472 5.40012 5.45763 5.52166 5.65165 5.72747 5.84323 5.85652 5.88781 5.97068 6.02734 6.16466 6.24605 6.32797 6.33884 6.44113 6.68185 6.75469 6.82513 6.93111 7.27052 7.53150 7.58605 8.12964 8.45587 8.81678 8.97011 9.51189 11.04473 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.004509 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.601467 B = 6208.379181 C = 6818.819634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.168 4.168 3 C 0.160 3.840 4 C -0.181 4.181 5 C -0.151 4.151 6 N -0.576 5.576 7 C 0.213 3.787 8 C -0.523 4.523 9 H 0.077 0.923 10 C 0.074 3.926 11 N -0.895 5.895 12 Si 0.872 3.128 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.266 1.266 16 C 0.581 3.419 17 O -0.519 6.519 18 C -0.258 4.258 19 C -0.031 4.031 20 C -0.203 4.203 21 C 0.410 3.590 22 C -0.195 4.195 23 O -0.462 6.462 24 C -0.245 4.245 25 S 0.292 5.708 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.155 0.845 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.940 -12.433 13.615 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 C 0.073 3.927 4 C -0.242 4.242 5 C -0.208 4.208 6 N -0.308 5.308 7 C 0.093 3.907 8 C -0.561 4.561 9 H 0.095 0.905 10 C -0.128 4.128 11 N -0.534 5.534 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.191 1.191 16 C 0.366 3.634 17 O -0.396 6.396 18 C -0.378 4.378 19 C -0.060 4.060 20 C -0.219 4.219 21 C 0.287 3.713 22 C -0.253 4.253 23 O -0.338 6.338 24 C -0.383 4.383 25 S 0.565 5.435 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.172 0.828 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.943 -11.368 13.701 22.010 hybrid contribution -0.030 0.029 -1.227 1.228 sum 12.913 -11.339 12.474 21.235 Atomic orbital electron populations 1.21912 0.94358 1.00692 1.03836 1.23158 0.98451 0.95797 1.03255 1.20466 0.94444 0.94740 0.83008 1.22572 0.96796 1.03536 1.01275 1.22247 1.01551 0.98571 0.98398 1.47981 1.54749 1.21502 1.06544 1.19799 0.94441 0.79932 0.96562 1.21286 0.97336 0.95595 1.41911 0.90462 1.24823 0.94700 0.98752 0.94539 1.69890 1.09773 1.31146 1.42547 0.86927 0.78876 0.85075 0.79251 1.19974 1.21125 1.19114 1.16861 0.78587 0.82954 0.85012 1.90819 1.56835 1.70619 1.21320 1.24391 1.14155 1.00146 0.99091 1.20341 0.95569 0.89678 1.00430 1.19565 1.10039 0.96796 0.95498 1.21958 0.74386 0.88440 0.86516 1.22161 1.03168 0.97447 1.02477 1.90576 1.37912 1.86645 1.18705 1.27221 1.03540 1.07999 0.99545 1.84839 1.51861 0.96834 1.09989 0.93730 0.92082 0.90929 0.89584 0.90676 0.89664 0.90176 0.91620 0.88861 0.92146 0.91981 0.94092 0.94934 0.92591 0.82786 0.90251 0.88937 0.89012 0.81347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.88 37.16 0.33 -1.98 16 2 C -0.17 -2.31 3.68 -26.73 -0.10 -2.41 16 3 C 0.16 2.38 0.84 -131.83 -0.11 2.27 16 4 C -0.18 -2.02 7.36 37.16 0.27 -1.75 16 5 C -0.15 -2.21 5.93 37.16 0.22 -1.99 16 6 N -0.58 -11.46 2.42 -161.68 -0.39 -11.85 16 7 C 0.21 4.97 3.58 -5.20 -0.02 4.95 16 8 C -0.52 -14.38 9.28 -34.44 -0.32 -14.70 16 9 H 0.08 2.35 7.07 -52.48 -0.37 1.98 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 12 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 13 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 16 C 0.58 12.27 6.78 -12.81 -0.09 12.18 16 17 O -0.52 -13.29 16.66 5.21 0.09 -13.20 16 18 C -0.26 -4.31 3.71 -37.38 -0.14 -4.45 16 19 C -0.03 -0.52 9.54 -40.46 -0.39 -0.91 16 20 C -0.20 -2.70 5.81 -106.61 -0.62 -3.32 16 21 C 0.41 5.29 7.22 -30.97 -0.22 5.07 16 22 C -0.20 -1.53 10.23 36.00 0.37 -1.16 16 23 O -0.46 -7.83 17.44 5.51 0.10 -7.73 16 24 C -0.24 -2.44 10.30 30.31 0.31 -2.13 16 25 S 0.29 3.18 12.32 -107.50 -1.32 1.86 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.86 6.07 -51.93 -0.32 0.54 16 28 H 0.07 1.42 7.15 -51.93 -0.37 1.05 16 29 H 0.09 1.31 3.14 -32.00 -0.10 1.21 16 30 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 31 H 0.08 0.88 7.81 -51.93 -0.41 0.47 16 32 H 0.08 0.65 6.42 -47.77 -0.31 0.34 16 33 H 0.07 0.79 5.14 -26.31 -0.14 0.65 16 34 H 0.09 1.65 5.77 -51.93 -0.30 1.35 16 35 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.06 0.92 6.54 -51.93 -0.34 0.58 16 37 H 0.04 0.89 4.72 -51.93 -0.25 0.65 16 38 H 0.03 0.83 6.97 -51.93 -0.36 0.47 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.15 2.89 7.98 -52.49 -0.42 2.47 16 41 H 0.08 0.43 6.02 -51.93 -0.31 0.12 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.17 1.04 6.55 -52.49 -0.34 0.69 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -34.89 344.46 -6.36 -41.25 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.53 Total: 2.70 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.59 Total: -8.31 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.38 Total: -38.14 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.18 Total: -20.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.32 Total: 1.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.89 -6.36 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189916653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.583 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds