Wall clock time and date at job start Tue Mar 31 2020 14:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47656 * 2 1 4 4 C 1.53001 * 109.47409 * 154.38919 * 3 2 1 5 5 C 1.53002 * 109.47087 * 34.39273 * 3 2 1 6 6 N 1.46492 * 109.47643 * 274.39298 * 3 2 1 7 7 C 1.46497 * 120.00715 * 130.44496 * 6 3 2 8 8 C 1.50695 * 109.47466 * 263.44913 * 7 6 3 9 9 H 1.08004 * 120.00144 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00052 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99929 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00076 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47116 * 90.00312 * 12 10 8 14 14 H 1.48500 * 109.47193 * 210.00411 * 12 10 8 15 15 H 1.48501 * 109.46945 * 330.00420 * 12 10 8 16 16 C 1.34781 * 119.99800 * 310.45345 * 6 3 2 17 17 O 1.21681 * 119.99965 * 186.20206 * 16 6 3 18 18 C 1.46767 * 119.99886 * 6.19057 * 16 6 3 19 19 C 1.34726 * 124.99764 * 143.66862 * 18 16 6 20 20 C 1.39215 * 113.67258 * 180.02562 * 19 18 16 21 21 C 1.46544 * 123.04117 * 180.02562 * 20 19 18 22 22 C 1.50689 * 120.00189 * 180.02562 * 21 20 19 23 23 O 1.21337 * 119.99362 * 0.02562 * 21 20 19 24 24 C 1.37074 * 113.92645 * 0.02562 * 20 19 18 25 25 S 1.70589 * 110.49343 * 0.26152 * 24 20 19 26 26 H 1.08991 * 109.47839 * 185.16778 * 1 2 3 27 27 H 1.09006 * 109.46917 * 305.17507 * 1 2 3 28 28 H 1.09004 * 109.46886 * 65.16692 * 1 2 3 29 29 H 1.09002 * 109.46878 * 239.99739 * 2 1 3 30 30 H 1.09004 * 109.46909 * 120.00292 * 2 1 3 31 31 H 1.09000 * 109.47461 * 209.24731 * 4 3 2 32 32 H 1.09003 * 109.46954 * 329.25030 * 4 3 2 33 33 H 1.09000 * 109.47058 * 89.24407 * 4 3 2 34 34 H 1.09001 * 109.47170 * 298.81331 * 5 3 2 35 35 H 1.08999 * 109.47488 * 58.81296 * 5 3 2 36 36 H 1.08998 * 109.47594 * 178.81492 * 5 3 2 37 37 H 1.09004 * 109.46787 * 23.45040 * 7 6 3 38 38 H 1.09001 * 109.47395 * 143.44183 * 7 6 3 39 39 H 0.97002 * 120.00183 * 180.02562 * 11 10 8 40 40 H 1.07999 * 123.16533 * 0.07296 * 19 18 16 41 41 H 1.09000 * 109.47368 * 359.97438 * 22 21 20 42 42 H 1.09000 * 109.47317 * 119.99975 * 22 21 20 43 43 H 1.09006 * 109.47346 * 240.00087 * 22 21 20 44 44 H 1.07994 * 124.75710 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.4365 1.4896 0.6235 5 6 1.0879 2.3201 0.8148 6 7 2.1032 1.9381 -1.3770 7 6 1.5058 3.2315 -1.7182 8 6 0.1229 3.0145 -2.2763 9 1 -0.2714 2.0133 -2.3681 10 6 -0.6390 4.0943 -2.6697 11 7 -1.8457 3.9049 -3.1572 12 14 0.0427 5.8261 -2.5102 13 1 0.7590 6.1930 -3.7582 14 1 -1.0736 6.7785 -2.2819 15 1 0.9847 5.8836 -1.3636 16 6 2.7109 1.2042 -2.3303 17 8 2.8634 1.6633 -3.4468 18 6 3.1889 -0.1487 -2.0215 19 6 3.1575 -1.1924 -2.8729 20 6 3.6716 -2.3687 -2.3344 21 6 3.7371 -3.6277 -3.0814 22 6 4.3072 -4.8614 -2.4304 23 8 3.3322 -3.6767 -4.2242 24 6 4.1111 -2.2429 -1.0421 25 16 3.8777 -0.6477 -0.4845 26 1 -0.3634 -1.0234 0.0926 27 1 -0.3633 0.5920 0.8401 28 1 -0.3633 0.4316 -0.9327 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.5913 2.4600 1.0952 32 1 3.5267 0.7029 1.3727 33 1 4.1864 1.3393 -0.1531 34 1 0.0981 2.3033 0.3586 35 1 1.0247 1.9388 1.8340 36 1 1.4625 3.3435 0.8325 37 1 1.4434 3.8503 -0.8230 38 1 2.1240 3.7321 -2.4634 39 1 -2.3816 4.6644 -3.4343 40 1 2.7706 -1.1228 -3.8788 41 1 4.6166 -4.6250 -1.4123 42 1 3.5486 -5.6437 -2.4076 43 1 5.1693 -5.2077 -3.0006 44 1 4.5412 -3.0426 -0.4575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189916653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:59 Heat of formation + Delta-G solvation = -26.260871 kcal Electronic energy + Delta-G solvation = -26654.962530 eV Core-core repulsion = 23086.056299 eV Total energy + Delta-G solvation = -3568.906231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72976 -40.61098 -38.67523 -37.85983 -35.33324 -33.83615 -32.59841 -31.37591 -30.80827 -29.21894 -28.18956 -26.47200 -24.88126 -24.65848 -23.16046 -21.60454 -20.25916 -19.55757 -19.14883 -18.25388 -17.55602 -17.11393 -16.83967 -16.39750 -16.21475 -15.94286 -15.76373 -15.65373 -15.31425 -14.99431 -14.82381 -14.35976 -14.12634 -13.90171 -13.73348 -13.62387 -13.25978 -13.11432 -13.04725 -12.95138 -12.84380 -12.81136 -12.48279 -12.28153 -12.04510 -11.91918 -11.84739 -11.65404 -11.50986 -11.36151 -11.00694 -10.80798 -10.57028 -9.87775 -9.46811 -8.97693 -8.31703 -6.35286 -0.53099 0.31127 0.45446 0.94306 1.29417 1.35279 1.42161 1.78069 2.05363 2.29696 2.31282 3.01842 3.24095 3.56509 3.67234 3.91451 3.99018 4.03468 4.24348 4.26192 4.33733 4.48567 4.57906 4.65899 4.69512 4.70099 4.71746 4.78339 4.79888 4.87964 4.96701 5.03785 5.07770 5.09692 5.11307 5.16919 5.32822 5.36310 5.42651 5.44973 5.57127 5.65886 6.26399 6.57583 6.61757 6.67033 7.16485 7.31134 8.85356 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.004509 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.601467 B = 6208.379181 C = 6818.819634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.171 4.171 3 C 0.143 3.857 4 C -0.180 4.180 5 C -0.150 4.150 6 N -0.578 5.578 7 C 0.222 3.778 8 C -0.520 4.520 9 H 0.026 0.974 10 C 0.011 3.989 11 N -0.947 5.947 12 Si 0.942 3.058 13 H -0.283 1.283 14 H -0.275 1.275 15 H -0.230 1.230 16 C 0.570 3.430 17 O -0.591 6.591 18 C -0.310 4.310 19 C -0.047 4.047 20 C -0.237 4.237 21 C 0.406 3.594 22 C -0.185 4.185 23 O -0.525 6.525 24 C -0.205 4.205 25 S 0.409 5.591 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.433 -13.866 19.677 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.209 4.209 3 C 0.059 3.941 4 C -0.240 4.240 5 C -0.207 4.207 6 N -0.308 5.308 7 C 0.100 3.900 8 C -0.558 4.558 9 H 0.044 0.956 10 C -0.187 4.187 11 N -0.588 5.588 12 Si 0.765 3.235 13 H -0.209 1.209 14 H -0.201 1.201 15 H -0.153 1.153 16 C 0.358 3.642 17 O -0.473 6.473 18 C -0.429 4.429 19 C -0.078 4.078 20 C -0.251 4.251 21 C 0.287 3.713 22 C -0.242 4.242 23 O -0.406 6.406 24 C -0.344 4.344 25 S 0.681 5.319 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 16.449 -12.834 19.847 28.796 hybrid contribution -1.177 0.384 -3.051 3.293 sum 15.272 -12.450 16.795 25.891 Atomic orbital electron populations 1.21839 0.96105 1.01361 1.01039 1.23301 0.97029 0.95625 1.04970 1.21031 0.97596 0.95225 0.80222 1.22608 0.93016 1.06634 1.01763 1.22246 0.99064 0.98938 1.00466 1.48082 1.53506 1.20317 1.08921 1.19464 0.91428 0.82409 0.96651 1.21451 0.99381 0.93386 1.41627 0.95583 1.25806 0.94865 1.03850 0.94152 1.70063 1.11615 1.32671 1.44430 0.85810 0.78885 0.78815 0.80027 1.20891 1.20064 1.15295 1.17602 0.77845 0.84598 0.84181 1.90747 1.59765 1.72681 1.24146 1.24081 1.17158 0.97563 1.04093 1.20263 0.96458 0.92153 0.98880 1.19535 1.12382 0.95809 0.97421 1.22839 0.72764 0.89989 0.85674 1.22199 1.03446 0.94570 1.03944 1.90562 1.41046 1.87571 1.21432 1.27884 0.99253 1.09478 0.97749 1.84023 1.47965 0.95531 1.04379 0.92046 0.90611 0.97236 0.91031 0.85069 0.87830 0.85450 0.92379 0.93005 0.87444 0.92039 0.91288 0.97321 0.92489 0.87858 0.86527 0.87857 0.87793 0.75544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.88 71.98 0.64 -3.83 16 2 C -0.17 -4.24 3.68 30.59 0.11 -4.13 16 3 C 0.14 3.93 0.84 3.60 0.00 3.93 16 4 C -0.18 -3.01 7.36 71.98 0.53 -2.48 16 5 C -0.15 -4.01 5.93 71.98 0.43 -3.59 16 6 N -0.58 -23.75 2.42 -783.66 -1.90 -25.64 16 7 C 0.22 10.82 3.58 85.63 0.31 11.12 16 8 C -0.52 -30.84 9.28 25.60 0.24 -30.61 16 9 H 0.03 1.76 7.07 -2.91 -0.02 1.74 16 10 C 0.01 0.64 5.47 84.65 0.46 1.10 16 11 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 12 Si 0.94 44.73 27.47 68.60 1.88 46.62 16 13 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.23 -9.49 6.54 99.48 0.65 -8.84 16 16 C 0.57 25.82 6.78 86.47 0.59 26.41 16 17 O -0.59 -33.61 16.66 -4.29 -0.07 -33.68 16 18 C -0.31 -10.61 3.71 23.70 0.09 -10.53 16 19 C -0.05 -1.69 9.54 21.70 0.21 -1.48 16 20 C -0.24 -6.04 5.81 -21.15 -0.12 -6.16 16 21 C 0.41 10.26 7.22 27.85 0.20 10.46 16 22 C -0.19 -2.16 10.23 71.23 0.73 -1.43 16 23 O -0.53 -19.15 17.44 -3.21 -0.06 -19.20 16 24 C -0.21 -2.93 10.30 67.55 0.70 -2.23 16 25 S 0.41 6.83 12.32 -56.49 -0.70 6.13 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 2.04 6.07 -2.38 -0.01 2.03 16 28 H 0.01 0.37 7.15 -2.39 -0.02 0.35 16 29 H 0.07 2.08 3.14 -24.63 -0.08 2.01 16 30 H 0.13 1.78 6.73 -2.38 -0.02 1.77 16 31 H 0.10 1.49 7.81 -2.39 -0.02 1.47 16 32 H 0.13 0.93 6.42 -5.03 -0.03 0.90 16 33 H 0.06 1.12 5.14 -18.68 -0.10 1.03 16 34 H 0.05 1.84 5.77 -2.39 -0.01 1.82 16 35 H 0.11 1.85 8.03 -2.39 -0.02 1.83 16 36 H 0.06 1.63 6.54 -2.39 -0.02 1.62 16 37 H 0.07 2.96 4.72 -2.39 -0.01 2.95 16 38 H 0.01 0.47 6.97 -2.39 -0.02 0.45 16 39 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 40 H 0.10 4.61 7.98 -2.91 -0.02 4.59 16 41 H 0.12 0.44 6.02 -2.39 -0.01 0.42 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.23 0.60 6.55 -2.91 -0.02 0.58 16 Total: -1.00 -94.71 344.46 5.38 -89.33 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.81 Total: 10.68 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.10 Total: -13.44 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.60 Total: -86.45 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -0.13 Total: -52.88 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -0.70 Total: 6.13 kcal Total: -94.71 5.38 -89.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189916653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.073 kcal (2) G-P(sol) polarization free energy of solvation -94.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds