Wall clock time and date at job start Tue Mar 31 2020 13:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32682 * 1 3 3 C 1.47661 * 119.99946 * 2 1 4 4 C 1.39716 * 119.99749 * 179.97438 * 3 2 1 5 5 C 1.37594 * 120.00736 * 180.02562 * 4 3 2 6 6 C 1.39750 * 119.99723 * 359.97438 * 5 4 3 7 7 C 1.47684 * 120.00707 * 179.97438 * 6 5 4 8 8 O 1.21577 * 119.99546 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00089 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47303 * 60.00249 * 20 18 16 22 22 H 1.48499 * 109.46956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47359 * 299.99968 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 C 1.39743 * 119.98889 * 0.25676 * 6 5 4 27 27 C 1.37605 * 119.99852 * 359.51000 * 26 6 5 28 28 H 1.08003 * 120.00177 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.00121 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.99729 * 180.02562 * 2 1 3 31 31 H 1.08003 * 119.99467 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00465 * 179.97438 * 5 4 3 33 33 H 0.97000 * 120.00448 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46848 * 59.99850 * 10 9 7 35 35 H 1.09001 * 109.46885 * 300.00464 * 10 9 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 41 41 H 1.08001 * 120.00179 * 179.72509 * 26 6 5 42 42 H 1.08000 * 120.00149 * 180.23409 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4623 1.2787 0.0005 5 6 4.1504 2.4702 0.0011 6 6 3.4518 3.6806 0.0005 7 6 4.1902 4.9596 0.0017 8 8 5.4060 4.9595 0.0026 9 7 3.5164 6.1267 0.0006 10 6 4.2489 7.3955 0.0012 11 6 3.2696 8.5409 0.0004 12 6 2.8264 9.0691 -1.1984 13 6 1.9247 10.1151 -1.2025 14 6 1.4720 10.6442 -0.0009 15 8 0.5905 11.6766 -0.0016 16 6 0.1044 12.0673 1.1938 17 1 0.4799 11.6193 2.1019 18 6 -0.8776 13.0441 1.2572 19 7 -1.3347 13.5901 0.1510 20 14 -1.5516 13.5848 2.9134 21 1 -0.4476 14.1317 3.7425 22 1 -2.5830 14.6334 2.7095 23 1 -2.1594 12.4196 3.6048 24 6 1.9232 10.1154 1.2013 25 6 2.8207 9.0657 1.1987 26 6 2.0544 3.6805 0.0049 27 6 1.3665 2.4887 -0.0005 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8668 -0.9353 -0.0004 31 1 4.0022 0.3433 0.0005 32 1 5.2304 2.4701 0.0019 33 1 2.5464 6.1268 -0.0005 34 1 4.8766 7.4530 -0.8881 35 1 4.8746 7.4533 0.8919 36 1 3.1829 8.6605 -2.1325 37 1 1.5757 10.5243 -2.1390 38 1 -2.0219 14.2732 0.1953 39 1 1.5733 10.5250 2.1374 40 1 3.1722 8.6543 2.1333 41 1 1.5143 4.6157 0.0089 42 1 0.2865 2.4886 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192040086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:42 Heat of formation + Delta-G solvation = 4.243915 kcal Electronic energy + Delta-G solvation = -24627.819432 eV Core-core repulsion = 20924.792037 eV Total energy + Delta-G solvation = -3703.027395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34046 -39.22912 -38.59969 -36.87903 -34.59329 -34.44263 -32.41360 -31.48170 -30.42528 -30.27588 -29.36754 -26.08846 -25.11055 -23.84090 -22.98373 -22.08321 -20.97353 -20.66736 -19.89802 -18.32134 -18.07840 -17.03585 -16.69082 -15.87578 -15.33921 -15.22039 -15.09511 -14.65404 -14.59709 -14.37602 -14.07913 -13.74287 -13.63841 -13.58049 -13.32493 -13.17278 -12.81421 -12.71857 -12.56243 -12.11919 -11.71010 -11.65970 -11.42148 -11.22254 -10.98802 -10.82621 -10.73325 -10.70660 -10.52312 -10.00766 -9.45793 -9.32420 -9.05274 -8.92994 -8.55801 -8.31589 -7.35919 -6.55065 -4.14120 0.26559 1.09449 1.92058 2.03263 2.10215 2.92390 3.07140 3.07683 3.11420 3.32771 3.71688 3.88581 4.30671 4.38706 4.46046 4.58178 4.72104 4.83995 4.99268 5.01518 5.09020 5.14255 5.21479 5.34330 5.39436 5.49062 5.63468 5.68521 5.77610 5.83817 5.90028 5.94961 6.07016 6.09886 6.17979 6.32015 6.36756 6.44125 6.56930 6.58021 6.77541 6.92784 7.11160 7.24285 7.32461 7.54273 7.68857 7.89381 8.18709 8.90052 9.57879 10.62263 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002246 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.576364 B =12461.742690 C =13640.593001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.119 4.119 5 C -0.059 4.059 6 C -0.132 4.132 7 C 0.552 3.448 8 O -0.545 6.545 9 N -0.716 5.716 10 C 0.179 3.821 11 C -0.216 4.216 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.160 3.840 15 O -0.172 6.172 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.237 4.237 25 C -0.050 4.050 26 C -0.082 4.082 27 C -0.123 4.123 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -22.752 0.339 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.137 4.137 5 C -0.078 4.078 6 C -0.135 4.135 7 C 0.340 3.660 8 O -0.424 6.424 9 N -0.367 5.367 10 C 0.057 3.943 11 C -0.218 4.218 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.106 3.894 15 O -0.075 6.075 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.493 5.493 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.256 4.256 25 C -0.069 4.069 26 C -0.101 4.101 27 C -0.141 4.141 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.991 -22.358 0.089 22.908 hybrid contribution -0.886 0.345 0.883 1.298 sum 4.105 -22.012 0.972 22.413 Atomic orbital electron populations 1.24494 0.95695 1.02574 0.98001 1.21833 0.95281 0.95724 1.01402 1.19325 0.93432 0.93267 0.97830 1.21230 0.93154 0.98184 1.01165 1.21210 1.00852 0.90721 0.95043 1.20097 0.93681 0.93875 1.05887 1.18283 0.87256 0.83821 0.76666 1.90762 1.13421 1.87735 1.50474 1.46293 1.10746 1.05571 1.74117 1.20017 0.92571 0.79727 1.01995 1.19201 1.06563 1.02286 0.93742 1.20538 0.95254 0.94914 0.96585 1.20217 1.03973 1.00932 0.96327 1.19443 0.89516 0.87163 0.93312 1.83979 1.50064 1.40290 1.33147 1.21308 1.20683 1.21980 0.83050 0.88961 1.25321 0.95777 0.95941 0.99402 1.70026 1.27029 1.25122 1.27129 0.85763 0.78870 0.78742 0.79986 1.19411 1.20194 1.19420 1.21156 1.04240 1.01725 0.98503 1.20651 0.95040 0.94793 0.96443 1.21303 0.93064 0.98663 0.97025 1.21246 1.00245 0.91451 1.01120 0.87563 0.87787 0.86188 0.85197 0.84490 0.76311 0.91338 0.91390 0.86924 0.86346 0.91798 0.85396 0.87364 0.85194 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 14.15 28.84 0.41 -0.58 16 2 C -0.12 -0.83 9.90 -37.63 -0.37 -1.21 16 3 C -0.04 -0.33 5.87 -104.95 -0.62 -0.94 16 4 C -0.12 -1.03 9.76 -39.26 -0.38 -1.42 16 5 C -0.06 -0.62 9.57 -39.25 -0.38 -1.00 16 6 C -0.13 -1.53 5.88 -104.91 -0.62 -2.14 16 7 C 0.55 7.63 7.77 -12.41 -0.10 7.53 16 8 O -0.54 -9.22 16.33 5.30 0.09 -9.13 16 9 N -0.72 -9.16 5.50 -62.48 -0.34 -9.50 16 10 C 0.18 2.50 5.80 -5.19 -0.03 2.47 16 11 C -0.22 -3.43 5.25 -104.57 -0.55 -3.98 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.20 -3.88 9.99 -39.40 -0.39 -4.27 16 14 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 15 O -0.17 -4.73 9.76 0.05 0.00 -4.73 16 16 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 17 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.48 13.67 55.48 0.76 -23.72 16 20 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 C -0.24 -4.84 9.17 -39.40 -0.36 -5.20 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 26 C -0.08 -0.80 9.52 -39.25 -0.37 -1.17 16 27 C -0.12 -1.07 9.38 -39.26 -0.37 -1.44 16 28 H 0.11 0.45 8.06 -52.48 -0.42 0.02 16 29 H 0.10 0.56 6.02 -52.49 -0.32 0.25 16 30 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.14 1.42 7.64 -52.49 -0.40 1.02 16 33 H 0.40 4.53 6.48 -40.82 -0.26 4.26 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.13 1.08 6.38 -52.49 -0.34 0.74 16 42 H 0.13 0.89 6.15 -52.49 -0.32 0.57 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -31.50 365.50 -8.69 -40.19 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.72 Total: 8.35 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -4.96 Total: -21.79 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.42 Total: -33.22 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.50 -8.69 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192040086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.433 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds