Wall clock time and date at job start Tue Mar 31 2020 14:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.53001 * 109.47124 * 240.00092 * 2 1 3 5 5 C 1.52997 * 109.47169 * 120.00282 * 2 1 3 6 6 H 1.08996 * 109.47404 * 174.15894 * 5 2 1 7 7 C 1.53003 * 109.46747 * 294.15290 * 5 2 1 8 8 O 1.42899 * 109.47034 * 58.24510 * 7 5 2 9 9 N 1.46500 * 109.47156 * 54.15236 * 5 2 1 10 10 C 1.34781 * 119.99632 * 155.00140 * 9 5 2 11 11 O 1.21549 * 120.00156 * 0.02562 * 10 9 5 12 12 C 1.47866 * 119.99516 * 179.97438 * 10 9 5 13 13 C 1.39668 * 120.10294 * 359.97438 * 12 10 9 14 14 C 1.38046 * 120.03993 * 180.02562 * 13 12 10 15 15 C 1.38181 * 120.24272 * 359.68019 * 14 13 12 16 16 C 1.39179 * 120.19816 * 0.59591 * 15 14 13 17 17 S 1.76205 * 120.01999 * 179.70076 * 16 15 14 18 18 C 1.76198 * 99.99902 * 264.78519 * 17 16 15 19 19 H 1.08009 * 120.00215 * 5.01293 * 18 17 16 20 20 C 1.38723 * 120.00477 * 185.01251 * 18 17 16 21 21 N 1.31631 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00549 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47192 * 89.99903 * 22 20 18 24 24 H 1.48503 * 109.47021 * 209.99926 * 22 20 18 25 25 H 1.48497 * 109.46896 * 329.99810 * 22 20 18 26 26 C 1.38883 * 119.96009 * 359.42428 * 16 15 14 27 27 H 1.08996 * 109.46745 * 310.21180 * 1 2 3 28 28 H 1.09007 * 109.47108 * 70.20837 * 1 2 3 29 29 H 1.08989 * 109.47447 * 190.20932 * 1 2 3 30 30 H 1.09000 * 109.47182 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46910 * 300.00115 * 3 2 1 32 32 H 1.09002 * 109.47279 * 59.99859 * 3 2 1 33 33 H 1.09004 * 109.46766 * 300.00297 * 4 2 1 34 34 H 1.09002 * 109.47209 * 59.99793 * 4 2 1 35 35 H 1.09000 * 109.47415 * 179.97438 * 4 2 1 36 36 H 1.09005 * 109.46861 * 178.24291 * 7 5 2 37 37 H 1.08995 * 109.47282 * 298.24127 * 7 5 2 38 38 H 0.96701 * 113.99808 * 179.97438 * 8 7 5 39 39 H 0.96992 * 120.00115 * 335.00072 * 9 5 2 40 40 H 1.08006 * 119.98530 * 0.02562 * 13 12 10 41 41 H 1.07997 * 119.87709 * 179.97438 * 14 13 12 42 42 H 1.07990 * 119.89956 * 180.29897 * 15 14 13 43 43 H 0.96991 * 120.00188 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.11589 * 180.24715 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1249 -0.8128 1.1985 7 6 1.6535 0.0798 2.4941 8 8 0.2336 0.2348 2.5389 9 7 1.4402 -2.0559 1.3216 10 6 2.0684 -3.0415 1.9927 11 8 3.1324 -2.8230 2.5382 12 6 1.4627 -4.3884 2.0662 13 6 0.2394 -4.6414 1.4415 14 6 -0.3251 -5.8992 1.5114 15 6 0.3189 -6.9143 2.1928 16 6 1.5355 -6.6718 2.8238 17 16 2.3488 -7.9675 3.6981 18 6 1.7692 -7.6458 5.3306 19 1 1.0367 -6.8705 5.5007 20 6 2.2536 -8.3883 6.3976 21 7 3.1458 -9.3336 6.1904 22 14 1.6386 -8.0478 8.1283 23 1 0.4471 -8.8899 8.4050 24 1 2.7093 -8.3684 9.1061 25 1 1.2705 -6.6143 8.2496 26 6 2.1108 -5.4094 2.7592 27 1 -0.3633 0.6635 0.7848 28 1 -0.3634 0.3480 -0.9670 29 1 -0.3634 -1.0113 0.1821 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 1.9895 -0.4497 3.3857 37 1 2.1252 1.0617 2.4553 38 1 -0.0836 0.7339 3.3041 39 1 0.5910 -2.2302 0.8866 40 1 -0.2652 -3.8526 0.9033 41 1 -1.2713 -6.0918 1.0277 42 1 -0.1255 -7.8974 2.2399 43 1 3.4848 -9.8525 6.9364 44 1 3.0567 -5.2195 3.2445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192881325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:46 Heat of formation + Delta-G solvation = -71.401380 kcal Electronic energy + Delta-G solvation = -25061.707372 eV Core-core repulsion = 21490.843702 eV Total energy + Delta-G solvation = -3570.863670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44815 -38.79517 -37.47224 -35.98273 -33.67986 -32.49688 -30.98388 -30.49850 -28.96499 -27.45522 -27.26129 -25.55991 -24.07442 -22.78417 -22.08157 -20.30053 -19.29734 -18.16265 -17.63639 -17.35486 -16.42174 -15.92541 -15.32535 -15.14187 -14.86314 -14.83200 -14.43645 -14.23685 -13.86451 -13.70358 -13.44869 -13.37333 -13.00826 -12.80032 -12.71984 -12.37164 -12.26413 -12.00426 -11.83592 -11.62599 -11.14702 -11.11444 -11.07568 -11.04587 -10.87789 -10.76173 -10.68852 -10.04450 -9.93740 -9.69392 -9.15361 -9.08849 -8.97967 -8.55224 -8.00842 -6.69916 -6.27571 -4.01320 1.19943 1.69527 3.06963 3.12902 3.21141 3.24349 3.29087 3.48982 4.04187 4.12128 4.28635 4.31542 4.56402 4.67903 4.87423 5.03690 5.08101 5.08692 5.12034 5.18970 5.27433 5.36365 5.40961 5.48812 5.50055 5.53589 5.57639 5.70505 5.72141 5.77108 5.90012 5.90705 5.94212 6.02079 6.09486 6.28325 6.31338 6.48847 6.62390 6.66805 6.95822 7.22131 7.38683 7.57619 7.58703 8.33849 8.34513 9.18251 10.79222 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.002975 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.510128 B = 9408.374388 C = 9997.852821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.144 4.144 5 C 0.158 3.842 6 H 0.099 0.901 7 C 0.060 3.940 8 O -0.558 6.558 9 N -0.717 5.717 10 C 0.563 3.437 11 O -0.540 6.540 12 C -0.153 4.153 13 C -0.089 4.089 14 C -0.141 4.141 15 C -0.056 4.056 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.019 4.019 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.371 0.629 39 H 0.401 0.599 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 19.870 -13.141 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.202 4.202 5 C 0.053 3.947 6 H 0.117 0.883 7 C -0.019 4.019 8 O -0.364 6.364 9 N -0.371 5.371 10 C 0.352 3.648 11 O -0.417 6.417 12 C -0.158 4.158 13 C -0.108 4.108 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.217 4.217 17 S 0.199 5.801 18 C -0.666 4.666 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.041 4.041 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.218 0.782 39 H 0.239 0.761 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.189 18.663 -13.570 23.651 hybrid contribution -1.587 1.387 1.820 2.785 sum -6.776 20.050 -11.750 24.207 Atomic orbital electron populations 1.22054 0.93438 1.02534 1.01907 1.20738 0.97045 0.95484 0.93913 1.21911 1.00906 0.94800 1.02209 1.21915 1.01152 1.00487 0.96601 1.21056 0.98648 0.81662 0.93301 0.88298 1.22691 0.81928 0.98738 0.98558 1.86601 1.21461 1.78998 1.49317 1.45968 1.25595 1.09769 1.55777 1.18443 0.84207 0.84417 0.77726 1.90756 1.22133 1.83139 1.45709 1.19863 0.97381 0.93702 1.04879 1.21132 0.94361 0.97008 0.98302 1.21054 1.00365 0.93188 1.01467 1.21945 0.93166 0.99055 0.93529 1.22841 0.97960 0.99477 1.01471 1.83594 1.61692 1.31115 1.03663 1.22837 1.28717 1.24026 0.91048 0.90642 1.25000 0.94557 0.94609 0.99421 1.69987 1.27891 1.20311 1.32409 0.86121 0.78483 0.78917 0.81810 1.20162 1.20651 1.19578 1.21940 0.98734 0.90687 0.92737 0.89296 0.93505 0.93334 0.92586 0.92282 0.92044 0.92408 0.92446 0.92578 0.92975 0.92647 0.78222 0.76120 0.86659 0.85887 0.85099 0.92067 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 7.46 37.16 0.28 -0.86 16 2 C -0.07 -0.58 0.62 -154.51 -0.10 -0.68 16 3 C -0.14 -0.96 7.94 37.16 0.30 -0.66 16 4 C -0.14 -1.18 8.35 37.16 0.31 -0.87 16 5 C 0.16 1.68 1.78 -67.93 -0.12 1.55 16 6 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 7 C 0.06 0.58 6.25 37.16 0.23 0.81 16 8 O -0.56 -4.76 9.86 -35.23 -0.35 -5.11 16 9 N -0.72 -8.78 4.32 -54.74 -0.24 -9.02 16 10 C 0.56 9.30 7.74 -12.32 -0.10 9.20 16 11 O -0.54 -10.68 16.01 5.32 0.09 -10.60 16 12 C -0.15 -2.66 5.87 -105.00 -0.62 -3.28 16 13 C -0.09 -1.28 9.54 -39.12 -0.37 -1.65 16 14 C -0.14 -2.08 10.02 -39.67 -0.40 -2.48 16 15 C -0.06 -1.02 9.79 -39.25 -0.38 -1.40 16 16 C -0.11 -2.32 5.45 -38.99 -0.21 -2.53 16 17 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 18 C -0.52 -14.79 9.46 30.91 0.29 -14.50 16 19 H 0.08 2.14 7.79 -52.48 -0.41 1.73 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 22 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 C -0.02 -0.40 9.34 -38.92 -0.36 -0.76 16 27 H 0.09 0.74 5.58 -51.93 -0.29 0.45 16 28 H 0.05 0.34 8.11 -51.92 -0.42 -0.08 16 29 H 0.05 0.41 5.91 -51.94 -0.31 0.10 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.40 6.38 -51.93 -0.33 0.07 16 33 H 0.06 0.51 7.78 -51.93 -0.40 0.11 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.43 6.44 -51.93 -0.33 0.09 16 38 H 0.37 1.88 9.12 45.56 0.42 2.30 16 39 H 0.40 4.24 4.42 -40.82 -0.18 4.06 16 40 H 0.12 1.24 6.40 -52.48 -0.34 0.90 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.14 3.11 7.65 -52.49 -0.40 2.71 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -33.11 369.08 -8.36 -41.48 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.49 Total: 5.36 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -1.35 Total: -16.13 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.50 Total: -33.92 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.26 Total: -15.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.11 -8.36 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192881325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.925 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds