Wall clock time and date at job start Tue Mar 31 2020 14:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.53001 * 109.47124 * 240.00092 * 2 1 3 5 5 C 1.52997 * 109.47169 * 120.00282 * 2 1 3 6 6 H 1.08996 * 109.47404 * 174.15894 * 5 2 1 7 7 C 1.53003 * 109.46747 * 294.15290 * 5 2 1 8 8 O 1.42899 * 109.47034 * 58.24510 * 7 5 2 9 9 N 1.46500 * 109.47156 * 54.15236 * 5 2 1 10 10 C 1.34781 * 119.99632 * 155.00140 * 9 5 2 11 11 O 1.21549 * 120.00156 * 0.02562 * 10 9 5 12 12 C 1.47866 * 119.99516 * 179.97438 * 10 9 5 13 13 C 1.39668 * 120.10294 * 359.97438 * 12 10 9 14 14 C 1.38046 * 120.03993 * 180.02562 * 13 12 10 15 15 C 1.38181 * 120.24272 * 359.68019 * 14 13 12 16 16 C 1.39179 * 120.19816 * 0.59591 * 15 14 13 17 17 S 1.76205 * 120.01999 * 179.70076 * 16 15 14 18 18 C 1.76198 * 99.99902 * 264.78519 * 17 16 15 19 19 H 1.08009 * 120.00215 * 5.01293 * 18 17 16 20 20 C 1.38723 * 120.00477 * 185.01251 * 18 17 16 21 21 N 1.31631 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00549 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47192 * 89.99903 * 22 20 18 24 24 H 1.48503 * 109.47021 * 209.99926 * 22 20 18 25 25 H 1.48497 * 109.46896 * 329.99810 * 22 20 18 26 26 C 1.38883 * 119.96009 * 359.42428 * 16 15 14 27 27 H 1.08996 * 109.46745 * 310.21180 * 1 2 3 28 28 H 1.09007 * 109.47108 * 70.20837 * 1 2 3 29 29 H 1.08989 * 109.47447 * 190.20932 * 1 2 3 30 30 H 1.09000 * 109.47182 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46910 * 300.00115 * 3 2 1 32 32 H 1.09002 * 109.47279 * 59.99859 * 3 2 1 33 33 H 1.09004 * 109.46766 * 300.00297 * 4 2 1 34 34 H 1.09002 * 109.47209 * 59.99793 * 4 2 1 35 35 H 1.09000 * 109.47415 * 179.97438 * 4 2 1 36 36 H 1.09005 * 109.46861 * 178.24291 * 7 5 2 37 37 H 1.08995 * 109.47282 * 298.24127 * 7 5 2 38 38 H 0.96701 * 113.99808 * 179.97438 * 8 7 5 39 39 H 0.96992 * 120.00115 * 335.00072 * 9 5 2 40 40 H 1.08006 * 119.98530 * 0.02562 * 13 12 10 41 41 H 1.07997 * 119.87709 * 179.97438 * 14 13 12 42 42 H 1.07990 * 119.89956 * 180.29897 * 15 14 13 43 43 H 0.96991 * 120.00188 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.11589 * 180.24715 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1249 -0.8128 1.1985 7 6 1.6535 0.0798 2.4941 8 8 0.2336 0.2348 2.5389 9 7 1.4402 -2.0559 1.3216 10 6 2.0684 -3.0415 1.9927 11 8 3.1324 -2.8230 2.5382 12 6 1.4627 -4.3884 2.0662 13 6 0.2394 -4.6414 1.4415 14 6 -0.3251 -5.8992 1.5114 15 6 0.3189 -6.9143 2.1928 16 6 1.5355 -6.6718 2.8238 17 16 2.3488 -7.9675 3.6981 18 6 1.7692 -7.6458 5.3306 19 1 1.0367 -6.8705 5.5007 20 6 2.2536 -8.3883 6.3976 21 7 3.1458 -9.3336 6.1904 22 14 1.6386 -8.0478 8.1283 23 1 0.4471 -8.8899 8.4050 24 1 2.7093 -8.3684 9.1061 25 1 1.2705 -6.6143 8.2496 26 6 2.1108 -5.4094 2.7592 27 1 -0.3633 0.6635 0.7848 28 1 -0.3634 0.3480 -0.9670 29 1 -0.3634 -1.0113 0.1821 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 1.9895 -0.4497 3.3857 37 1 2.1252 1.0617 2.4553 38 1 -0.0836 0.7339 3.3041 39 1 0.5910 -2.2302 0.8866 40 1 -0.2652 -3.8526 0.9033 41 1 -1.2713 -6.0918 1.0277 42 1 -0.1255 -7.8974 2.2399 43 1 3.4848 -9.8525 6.9364 44 1 3.0567 -5.2195 3.2445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192881325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:45 Heat of formation + Delta-G solvation = -93.946788 kcal Electronic energy + Delta-G solvation = -25062.685014 eV Core-core repulsion = 21490.843702 eV Total energy + Delta-G solvation = -3571.841312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57221 -39.89214 -38.74182 -36.66978 -34.78612 -34.66557 -32.29036 -31.91033 -29.81199 -28.07153 -27.93736 -27.75412 -25.22384 -23.93680 -23.34987 -21.57410 -20.32046 -19.75807 -18.82236 -18.38141 -17.42007 -17.19186 -16.94664 -16.69252 -16.30302 -15.86867 -15.68714 -15.32390 -15.09925 -14.79188 -14.63894 -14.55421 -14.13370 -13.85820 -13.59127 -13.43215 -13.24579 -13.10550 -12.97506 -12.94937 -12.74074 -12.61998 -12.43970 -12.40419 -11.76730 -11.71973 -11.53887 -11.47169 -11.26285 -11.13305 -10.77873 -10.66043 -10.20615 -9.89640 -9.71374 -8.81771 -8.40456 -6.20619 -0.19619 0.23781 1.28270 1.36371 1.44860 1.63508 1.78640 2.06390 2.23499 2.78779 2.92482 3.36102 3.40464 3.56335 3.68812 3.87086 3.92395 3.97862 4.07223 4.31007 4.34368 4.38725 4.46230 4.48136 4.61355 4.67602 4.76715 4.84132 4.86589 4.90936 4.97924 5.11620 5.14763 5.20853 5.24198 5.30407 5.33337 5.37072 5.42430 5.48811 5.51799 5.74719 5.84616 6.14519 6.46659 6.86923 6.99791 7.13147 8.66775 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.002975 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.510128 B = 9408.374388 C = 9997.852821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.145 4.145 5 C 0.150 3.850 6 H 0.080 0.920 7 C 0.067 3.933 8 O -0.561 6.561 9 N -0.694 5.694 10 C 0.561 3.439 11 O -0.583 6.583 12 C -0.157 4.157 13 C -0.065 4.065 14 C -0.120 4.120 15 C -0.063 4.063 16 C -0.128 4.128 17 S -0.094 6.094 18 C -0.536 4.536 19 H 0.066 0.934 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.045 4.045 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.079 0.921 38 H 0.388 0.612 39 H 0.412 0.588 40 H 0.166 0.834 41 H 0.176 0.824 42 H 0.137 0.863 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 22.366 -14.576 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.203 4.203 5 C 0.046 3.954 6 H 0.098 0.902 7 C -0.012 4.012 8 O -0.369 6.369 9 N -0.347 5.347 10 C 0.349 3.651 11 O -0.464 6.464 12 C -0.162 4.162 13 C -0.083 4.083 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.239 4.239 17 S 0.141 5.859 18 C -0.683 4.683 19 H 0.084 0.916 20 C -0.186 4.186 21 N -0.543 5.543 22 Si 0.814 3.186 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.194 1.194 26 C -0.067 4.067 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.097 0.903 38 H 0.237 0.763 39 H 0.252 0.748 40 H 0.183 0.817 41 H 0.193 0.807 42 H 0.155 0.845 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.519 21.187 -15.036 27.341 hybrid contribution -0.630 0.745 2.107 2.321 sum -9.149 21.931 -12.930 27.053 Atomic orbital electron populations 1.22037 0.92685 1.02350 1.02633 1.20708 0.97490 0.95922 0.92275 1.21912 1.00914 0.93794 1.03094 1.21935 1.00738 1.00302 0.97283 1.21266 0.97798 0.80947 0.95399 0.90196 1.22509 0.82893 0.99266 0.96510 1.86548 1.20384 1.79503 1.50462 1.45827 1.25383 1.09600 1.53895 1.18410 0.83844 0.84880 0.77933 1.90739 1.24137 1.83740 1.47828 1.19981 0.98439 0.93223 1.04517 1.21652 0.92380 0.98257 0.96049 1.21543 1.01351 0.91733 0.99255 1.22071 0.91961 1.00700 0.93612 1.22503 0.99877 0.98156 1.03364 1.83469 1.63808 1.34441 1.04188 1.23055 1.28877 1.23945 0.92463 0.91560 1.26012 0.94570 0.94134 1.03846 1.70107 1.29030 1.21252 1.33868 0.85042 0.78481 0.78843 0.76221 1.18583 1.19641 1.19392 1.21618 0.98366 0.91833 0.94886 0.89388 0.92242 0.93636 0.92714 0.91026 0.91531 0.93092 0.90848 0.93367 0.96134 0.90334 0.76255 0.74762 0.81679 0.80681 0.84542 0.91662 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.46 71.98 0.54 -1.17 16 2 C -0.06 -0.87 0.62 -52.18 -0.03 -0.90 16 3 C -0.14 -1.52 7.94 71.98 0.57 -0.94 16 4 C -0.15 -2.03 8.35 71.98 0.60 -1.43 16 5 C 0.15 2.99 1.78 44.99 0.08 3.07 16 6 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 7 C 0.07 1.21 6.25 71.98 0.45 1.66 16 8 O -0.56 -8.07 9.86 -148.98 -1.47 -9.53 16 9 N -0.69 -15.82 4.32 -445.39 -1.93 -17.74 16 10 C 0.56 18.55 7.74 86.79 0.67 19.22 16 11 O -0.58 -24.31 16.01 -3.87 -0.06 -24.37 16 12 C -0.16 -5.37 5.87 -20.11 -0.12 -5.48 16 13 C -0.06 -1.61 9.54 22.57 0.22 -1.39 16 14 C -0.12 -3.03 10.02 22.21 0.22 -2.81 16 15 C -0.06 -2.22 9.79 22.48 0.22 -2.00 16 16 C -0.13 -5.78 5.45 22.65 0.12 -5.65 16 17 S -0.09 -5.21 21.41 -56.49 -1.21 -6.42 16 18 C -0.54 -31.96 9.46 67.94 0.64 -31.32 16 19 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 20 C 0.02 1.14 5.49 84.84 0.47 1.60 16 21 N -0.91 -55.24 13.22 21.63 0.29 -54.95 16 22 Si 0.99 45.13 29.55 68.60 2.03 47.16 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 C -0.05 -1.98 9.34 22.70 0.21 -1.77 16 27 H 0.09 1.13 5.58 -2.39 -0.01 1.12 16 28 H 0.06 0.60 8.11 -2.38 -0.02 0.58 16 29 H 0.04 0.57 5.91 -2.39 -0.01 0.56 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.66 6.38 -2.39 -0.02 0.65 16 33 H 0.05 0.77 7.78 -2.38 -0.02 0.75 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.08 1.06 6.44 -2.39 -0.02 1.04 16 38 H 0.39 2.87 9.12 -74.06 -0.68 2.19 16 39 H 0.41 7.28 4.42 -92.71 -0.41 6.87 16 40 H 0.17 2.50 6.40 -2.91 -0.02 2.48 16 41 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.14 4.62 8.06 -2.92 -0.02 4.60 16 43 H 0.27 15.45 8.31 -92.72 -0.77 14.68 16 44 H 0.10 5.10 7.65 -2.91 -0.02 5.08 16 Total: -1.00 -78.21 369.08 2.45 -75.76 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.06 Total: 19.43 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.86 Total: -29.32 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.64 Total: -72.70 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -1.53 Total: -33.90 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.21 Total: -6.42 kcal Total: -78.21 2.45 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192881325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.188 kcal (2) G-P(sol) polarization free energy of solvation -78.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds