Wall clock time and date at job start Tue Mar 31 2020 13:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99944 * 2 1 4 4 C 1.53002 * 109.47241 * 304.25334 * 3 2 1 5 5 C 1.50701 * 109.46960 * 184.25320 * 3 2 1 6 6 O 1.21284 * 119.99680 * 214.99860 * 5 3 2 7 7 N 1.34775 * 120.00061 * 35.00159 * 5 3 2 8 8 C 1.47581 * 134.49243 * 179.97438 * 7 5 3 9 9 C 1.53951 * 86.11513 * 155.35698 * 8 7 5 10 10 O 1.42898 * 113.74264 * 269.15298 * 9 8 7 11 11 C 1.50698 * 113.73812 * 137.95643 * 9 8 7 12 12 H 1.08003 * 120.00068 * 359.97438 * 11 9 8 13 13 C 1.37880 * 120.00020 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99594 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00293 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47138 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46841 * 300.00200 * 15 13 11 18 18 H 1.48497 * 109.47050 * 59.99940 * 15 13 11 19 19 C 1.47585 * 134.49278 * 359.97438 * 7 5 3 20 20 C 1.50699 * 109.47292 * 64.25467 * 3 2 1 21 21 C 1.38217 * 120.01180 * 6.13022 * 20 3 2 22 22 C 1.38225 * 120.02834 * 179.97438 * 21 20 3 23 23 C 1.38273 * 120.04647 * 0.02617 * 22 21 20 24 24 C 1.38172 * 120.02763 * 359.97438 * 23 22 21 25 25 C 1.38438 * 120.01498 * 185.85938 * 20 3 2 26 26 F 1.35100 * 120.02178 * 359.97438 * 25 20 3 27 27 H 1.09000 * 109.47292 * 305.61765 * 1 2 3 28 28 H 1.09003 * 109.46775 * 65.61991 * 1 2 3 29 29 H 1.09000 * 109.47239 * 185.61909 * 1 2 3 30 30 H 1.09008 * 109.47020 * 300.00262 * 4 3 2 31 31 H 1.08998 * 109.46931 * 59.99666 * 4 3 2 32 32 H 1.08997 * 109.47325 * 179.97438 * 4 3 2 33 33 H 1.09005 * 113.77031 * 41.05954 * 8 7 5 34 34 H 1.08999 * 113.87524 * 269.67107 * 8 7 5 35 35 H 0.96698 * 113.99949 * 178.07642 * 10 9 8 36 36 H 0.97003 * 120.00186 * 179.97438 * 14 13 11 37 37 H 1.08998 * 113.76961 * 90.33902 * 19 7 5 38 38 H 1.08997 * 113.76525 * 318.94356 * 19 7 5 39 39 H 1.07998 * 119.98867 * 0.02562 * 21 20 3 40 40 H 1.08000 * 119.98039 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.98645 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.01244 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4759 2.1016 -1.1923 5 6 3.5089 1.1880 -0.1054 6 8 4.2215 1.9800 0.4743 7 7 4.0574 0.2029 -0.8438 8 6 5.4399 -0.2032 -1.1628 9 6 4.8604 -1.6093 -1.4019 10 8 4.8642 -2.4386 -0.2382 11 6 5.4245 -2.2994 -2.6170 12 1 6.1649 -1.8017 -3.2257 13 6 4.9945 -3.5658 -2.9523 14 7 4.0925 -4.1716 -2.2114 15 14 5.6932 -4.4210 -4.4590 16 1 5.0722 -5.7627 -4.5990 17 1 5.4002 -3.6107 -5.6684 18 1 7.1628 -4.5697 -4.3068 19 6 3.5168 -0.9028 -1.6581 20 6 1.6507 2.0154 1.2798 21 6 0.9773 1.3394 2.2797 22 6 0.6478 1.9901 3.4538 23 6 0.9911 3.3180 3.6293 24 6 1.6644 3.9958 2.6311 25 6 1.9999 3.3433 1.4566 26 9 2.6634 4.0033 0.4823 27 1 -0.3634 0.5985 0.8354 28 1 -0.3633 0.4242 -0.9361 29 1 -0.3634 -1.0227 0.1006 30 1 1.7359 1.5881 -2.1180 31 1 0.3919 2.1864 -1.1161 32 1 1.9189 3.0975 -1.1921 33 1 6.1213 -0.1474 -0.3137 34 1 5.8411 0.2653 -2.0615 35 1 4.4741 -3.3125 -0.3768 36 1 3.7897 -5.0624 -2.4475 37 1 3.3513 -0.6390 -2.7026 38 1 2.6626 -1.4055 -1.2045 39 1 0.7090 0.3021 2.1439 40 1 0.1220 1.4610 4.2348 41 1 0.7329 3.8256 4.5469 42 1 1.9320 5.0331 2.7682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193987294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:10 Heat of formation + Delta-G solvation = -90.375878 kcal Electronic energy + Delta-G solvation = -28931.135667 eV Core-core repulsion = 24793.236025 eV Total energy + Delta-G solvation = -4137.899642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.74503 -40.44576 -38.95905 -37.65858 -37.03527 -33.86318 -32.40428 -32.13413 -30.79487 -29.69526 -28.41618 -27.16550 -25.31713 -25.14346 -23.79696 -22.74913 -21.70660 -19.81421 -18.58933 -17.67399 -17.49480 -16.92903 -16.43317 -15.95729 -15.55183 -15.40333 -15.32388 -15.02861 -14.82059 -14.56892 -14.10578 -13.97642 -13.73269 -13.28375 -12.91321 -12.73630 -12.72988 -12.39485 -12.35903 -12.05094 -11.95314 -11.81032 -11.58906 -11.48833 -11.43786 -11.01681 -10.96924 -10.72732 -10.47478 -10.20526 -9.69141 -9.62895 -9.23378 -8.90882 -8.70690 -8.61094 -8.28616 -7.75754 -6.33665 -4.43835 1.09976 1.19526 2.99063 3.18952 3.24558 3.27115 3.41199 3.68452 3.87283 4.22228 4.32470 4.48033 4.73449 4.81951 4.88091 4.97011 5.03549 5.20471 5.29608 5.36439 5.43397 5.58399 5.60143 5.71226 5.73981 5.77838 6.00220 6.05293 6.10421 6.12956 6.24026 6.25662 6.33753 6.47420 6.62186 6.71651 6.86394 6.93382 7.11035 7.18657 7.68521 7.89125 8.51151 8.58272 8.75580 9.26849 9.55167 10.72720 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.003759 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.296202 B = 7447.774270 C = 7781.296644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.350 6.350 3 C 0.151 3.849 4 C -0.180 4.180 5 C 0.547 3.453 6 O -0.549 6.549 7 N -0.615 5.615 8 C 0.109 3.891 9 C 0.239 3.761 10 O -0.572 6.572 11 C -0.537 4.537 12 H 0.070 0.930 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.907 3.093 16 H -0.285 1.285 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.084 3.916 20 C -0.136 4.136 21 C -0.079 4.079 22 C -0.139 4.139 23 C -0.089 4.089 24 C -0.164 4.164 25 C 0.141 3.859 26 F -0.125 7.125 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.392 0.608 36 H 0.273 0.727 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 10.256 5.881 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.268 6.268 3 C 0.108 3.892 4 C -0.238 4.238 5 C 0.334 3.666 6 O -0.428 6.428 7 N -0.346 5.346 8 C -0.012 4.012 9 C 0.197 3.803 10 O -0.384 6.384 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.129 4.129 14 N -0.537 5.537 15 Si 0.734 3.266 16 H -0.210 1.210 17 H -0.200 1.200 18 H -0.199 1.199 19 C -0.039 4.039 20 C -0.138 4.138 21 C -0.097 4.097 22 C -0.157 4.157 23 C -0.107 4.107 24 C -0.183 4.183 25 C 0.122 3.878 26 F -0.103 7.103 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.622 10.994 6.524 16.621 hybrid contribution -0.143 -0.624 -1.247 1.401 sum -10.765 10.371 5.277 15.852 Atomic orbital electron populations 1.23134 0.81551 1.03287 1.00783 1.88214 1.19623 1.24355 1.94593 1.20309 0.92162 0.84553 0.92224 1.22485 1.01932 1.01887 0.97451 1.19280 0.87540 0.80037 0.79743 1.90682 1.61619 1.42322 1.48196 1.50042 1.10715 1.27631 1.46236 1.23521 0.84190 0.94161 0.99367 1.19822 0.89296 0.86249 0.84927 1.86054 1.84982 1.31827 1.35541 1.21482 1.24916 1.01380 1.09767 0.91210 1.25049 0.93866 0.96862 0.97157 1.69328 1.29973 1.15144 1.39246 0.86413 0.79474 0.78472 0.82270 1.21033 1.19954 1.19903 1.24335 1.02295 0.83983 0.93239 1.20089 1.02585 0.93210 0.97892 1.21100 0.96165 1.00484 0.91946 1.21141 1.02050 0.94989 0.97566 1.20997 0.96984 0.94552 0.98196 1.21099 1.02772 1.01222 0.93218 1.17345 0.93798 0.89860 0.86806 1.91476 1.77888 1.80303 1.60670 0.92878 0.93586 0.88950 0.90460 0.91025 0.89809 0.91195 0.89670 0.75258 0.91678 0.90702 0.89806 0.84020 0.85292 0.85188 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.23 101.05 0.93 1.04 16 2 O -0.35 -5.92 7.15 -35.23 -0.25 -6.17 16 3 C 0.15 2.62 0.72 -92.92 -0.07 2.55 16 4 C -0.18 -2.66 7.82 37.16 0.29 -2.37 16 5 C 0.55 11.86 6.85 -10.99 -0.08 11.78 16 6 O -0.55 -13.13 14.95 5.55 0.08 -13.05 16 7 N -0.61 -13.69 3.58 -178.31 -0.64 -14.33 16 8 C 0.11 2.48 8.23 -2.97 -0.02 2.46 16 9 C 0.24 5.87 1.44 -90.84 -0.13 5.74 16 10 O -0.57 -15.14 13.48 -35.23 -0.48 -15.61 16 11 C -0.54 -13.65 8.62 -34.44 -0.30 -13.95 16 12 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.07 1.83 5.40 -17.82 -0.10 1.74 16 14 N -0.90 -22.83 11.09 55.43 0.61 -22.22 16 15 Si 0.91 19.55 29.54 -169.99 -5.02 14.53 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.08 1.87 7.41 -2.97 -0.02 1.85 16 20 C -0.14 -2.18 4.27 -104.56 -0.45 -2.63 16 21 C -0.08 -1.08 7.60 -39.59 -0.30 -1.38 16 22 C -0.14 -1.55 10.05 -39.57 -0.40 -1.95 16 23 C -0.09 -0.95 10.04 -39.59 -0.40 -1.35 16 24 C -0.16 -2.07 10.03 -39.52 -0.40 -2.47 16 25 C 0.14 2.24 6.19 -39.42 -0.24 1.99 16 26 F -0.13 -2.17 13.19 2.25 0.03 -2.14 16 27 H 0.05 0.57 5.03 -51.93 -0.26 0.31 16 28 H 0.05 0.51 6.68 -51.93 -0.35 0.16 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 31 H 0.07 0.87 6.62 -51.93 -0.34 0.52 16 32 H 0.08 1.27 5.87 -51.93 -0.30 0.97 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 35 H 0.39 10.41 6.46 45.56 0.29 10.71 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.07 1.60 8.09 -51.93 -0.42 1.18 16 38 H 0.08 1.91 6.58 -51.93 -0.34 1.57 16 39 H 0.14 1.83 5.67 -52.49 -0.30 1.53 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -30.23 342.01 -6.70 -36.93 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.52 Total: 13.85 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.67 Total: 3.07 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.02 Total: -36.55 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.64 Total: -34.84 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.03 Total: -2.14 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.23 -6.70 -36.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193987294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.446 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds