Wall clock time and date at job start Tue Mar 31 2020 13:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99944 * 2 1 4 4 C 1.53002 * 109.47241 * 304.25334 * 3 2 1 5 5 C 1.50701 * 109.46960 * 184.25320 * 3 2 1 6 6 O 1.21284 * 119.99680 * 214.99860 * 5 3 2 7 7 N 1.34775 * 120.00061 * 35.00159 * 5 3 2 8 8 C 1.47581 * 134.49243 * 179.97438 * 7 5 3 9 9 C 1.53951 * 86.11513 * 155.35698 * 8 7 5 10 10 O 1.42898 * 113.74264 * 269.15298 * 9 8 7 11 11 C 1.50698 * 113.73812 * 137.95643 * 9 8 7 12 12 H 1.08003 * 120.00068 * 359.97438 * 11 9 8 13 13 C 1.37880 * 120.00020 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99594 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00293 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47138 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46841 * 300.00200 * 15 13 11 18 18 H 1.48497 * 109.47050 * 59.99940 * 15 13 11 19 19 C 1.47585 * 134.49278 * 359.97438 * 7 5 3 20 20 C 1.50699 * 109.47292 * 64.25467 * 3 2 1 21 21 C 1.38217 * 120.01180 * 6.13022 * 20 3 2 22 22 C 1.38225 * 120.02834 * 179.97438 * 21 20 3 23 23 C 1.38273 * 120.04647 * 0.02617 * 22 21 20 24 24 C 1.38172 * 120.02763 * 359.97438 * 23 22 21 25 25 C 1.38438 * 120.01498 * 185.85938 * 20 3 2 26 26 F 1.35100 * 120.02178 * 359.97438 * 25 20 3 27 27 H 1.09000 * 109.47292 * 305.61765 * 1 2 3 28 28 H 1.09003 * 109.46775 * 65.61991 * 1 2 3 29 29 H 1.09000 * 109.47239 * 185.61909 * 1 2 3 30 30 H 1.09008 * 109.47020 * 300.00262 * 4 3 2 31 31 H 1.08998 * 109.46931 * 59.99666 * 4 3 2 32 32 H 1.08997 * 109.47325 * 179.97438 * 4 3 2 33 33 H 1.09005 * 113.77031 * 41.05954 * 8 7 5 34 34 H 1.08999 * 113.87524 * 269.67107 * 8 7 5 35 35 H 0.96698 * 113.99949 * 178.07642 * 10 9 8 36 36 H 0.97003 * 120.00186 * 179.97438 * 14 13 11 37 37 H 1.08998 * 113.76961 * 90.33902 * 19 7 5 38 38 H 1.08997 * 113.76525 * 318.94356 * 19 7 5 39 39 H 1.07998 * 119.98867 * 0.02562 * 21 20 3 40 40 H 1.08000 * 119.98039 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.98645 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.01244 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4759 2.1016 -1.1923 5 6 3.5089 1.1880 -0.1054 6 8 4.2215 1.9800 0.4743 7 7 4.0574 0.2029 -0.8438 8 6 5.4399 -0.2032 -1.1628 9 6 4.8604 -1.6093 -1.4019 10 8 4.8642 -2.4386 -0.2382 11 6 5.4245 -2.2994 -2.6170 12 1 6.1649 -1.8017 -3.2257 13 6 4.9945 -3.5658 -2.9523 14 7 4.0925 -4.1716 -2.2114 15 14 5.6932 -4.4210 -4.4590 16 1 5.0722 -5.7627 -4.5990 17 1 5.4002 -3.6107 -5.6684 18 1 7.1628 -4.5697 -4.3068 19 6 3.5168 -0.9028 -1.6581 20 6 1.6507 2.0154 1.2798 21 6 0.9773 1.3394 2.2797 22 6 0.6478 1.9901 3.4538 23 6 0.9911 3.3180 3.6293 24 6 1.6644 3.9958 2.6311 25 6 1.9999 3.3433 1.4566 26 9 2.6634 4.0033 0.4823 27 1 -0.3634 0.5985 0.8354 28 1 -0.3633 0.4242 -0.9361 29 1 -0.3634 -1.0227 0.1006 30 1 1.7359 1.5881 -2.1180 31 1 0.3919 2.1864 -1.1161 32 1 1.9189 3.0975 -1.1921 33 1 6.1213 -0.1474 -0.3137 34 1 5.8411 0.2653 -2.0615 35 1 4.4741 -3.3125 -0.3768 36 1 3.7897 -5.0624 -2.4475 37 1 3.3513 -0.6390 -2.7026 38 1 2.6626 -1.4055 -1.2045 39 1 0.7090 0.3021 2.1439 40 1 0.1220 1.4610 4.2348 41 1 0.7329 3.8256 4.5469 42 1 1.9320 5.0331 2.7682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193987294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:09 Heat of formation + Delta-G solvation = -110.862122 kcal Electronic energy + Delta-G solvation = -28932.024017 eV Core-core repulsion = 24793.236025 eV Total energy + Delta-G solvation = -4138.787992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.92013 -41.82482 -40.46620 -38.98098 -38.55198 -35.80267 -34.11158 -33.58709 -31.78851 -30.94004 -29.97388 -28.33551 -27.08450 -26.97088 -24.94462 -23.74160 -23.02631 -21.44552 -20.20763 -19.34277 -18.76694 -18.40731 -17.75750 -17.26403 -17.08621 -16.77489 -16.71528 -16.51761 -16.07517 -15.84173 -15.74183 -15.26844 -15.21347 -14.54801 -14.49074 -14.18406 -14.02039 -13.93544 -13.58133 -13.49170 -13.36595 -13.26495 -12.98297 -12.82840 -12.74381 -12.53762 -12.47250 -12.22725 -12.17037 -11.82212 -11.39167 -10.98351 -10.80781 -10.62487 -10.22709 -9.91119 -9.63830 -9.57518 -8.24152 -6.41679 0.09862 0.21688 1.40423 1.48740 1.50790 1.58170 1.89154 2.41654 2.58466 2.63991 2.97567 3.26009 3.34630 3.41928 3.72137 3.81008 3.84947 4.10246 4.22198 4.32593 4.35039 4.40391 4.45138 4.48054 4.49496 4.54532 4.60740 4.77641 4.79115 4.84131 4.93526 4.96740 5.09172 5.09487 5.15560 5.26723 5.31672 5.41135 5.74383 5.91390 5.94826 5.98203 6.62862 6.78635 7.04654 7.31568 7.49903 8.81758 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.003759 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.296202 B = 7447.774270 C = 7781.296644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.376 6.376 3 C 0.157 3.843 4 C -0.174 4.174 5 C 0.536 3.464 6 O -0.578 6.578 7 N -0.619 5.619 8 C 0.107 3.893 9 C 0.221 3.779 10 O -0.587 6.587 11 C -0.559 4.559 12 H 0.071 0.929 13 C 0.035 3.965 14 N -0.914 5.914 15 Si 0.969 3.031 16 H -0.281 1.281 17 H -0.268 1.268 18 H -0.275 1.275 19 C 0.103 3.897 20 C -0.160 4.160 21 C -0.091 4.091 22 C -0.130 4.130 23 C -0.078 4.078 24 C -0.167 4.167 25 C 0.107 3.893 26 F -0.144 7.144 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.388 0.612 36 H 0.276 0.724 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 10.586 6.567 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.295 6.295 3 C 0.114 3.886 4 C -0.231 4.231 5 C 0.325 3.675 6 O -0.460 6.460 7 N -0.351 5.351 8 C -0.015 4.015 9 C 0.180 3.820 10 O -0.399 6.399 11 C -0.597 4.597 12 H 0.090 0.910 13 C -0.166 4.166 14 N -0.554 5.554 15 Si 0.794 3.206 16 H -0.206 1.206 17 H -0.192 1.192 18 H -0.201 1.201 19 C -0.019 4.019 20 C -0.162 4.162 21 C -0.109 4.109 22 C -0.148 4.148 23 C -0.096 4.096 24 C -0.185 4.185 25 C 0.088 3.912 26 F -0.123 7.123 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.162 0.838 40 H 0.182 0.818 41 H 0.189 0.811 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.401 11.335 7.211 18.283 hybrid contribution 0.378 -0.720 -1.336 1.565 sum -12.023 10.615 5.874 17.080 Atomic orbital electron populations 1.23372 0.79095 1.04601 1.02117 1.88149 1.22273 1.24208 1.94900 1.20094 0.89021 0.85278 0.94219 1.22451 1.03561 1.00862 0.96216 1.20187 0.89775 0.79035 0.78546 1.90642 1.63119 1.43215 1.49007 1.50099 1.10268 1.28100 1.46639 1.23529 0.84676 0.93691 0.99609 1.20086 0.90949 0.86576 0.84379 1.86039 1.85163 1.31879 1.36813 1.21699 1.25559 1.02227 1.10243 0.91049 1.25743 0.93998 0.97239 0.99632 1.69392 1.30410 1.15394 1.40248 0.85437 0.78461 0.77486 0.79204 1.20611 1.19241 1.20077 1.24061 1.00816 0.83521 0.93521 1.20116 1.04452 0.93571 0.98058 1.21279 0.96436 1.00726 0.92471 1.21587 1.00790 0.95306 0.97103 1.21499 0.94918 0.94362 0.98781 1.21455 1.02389 1.02280 0.92404 1.17781 0.95238 0.90373 0.87836 1.91418 1.78609 1.80616 1.61641 0.91280 0.92425 0.87692 0.91030 0.88217 0.90610 0.92495 0.87948 0.75717 0.91395 0.89890 0.90452 0.83788 0.81817 0.81107 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 9.23 113.37 1.05 1.12 16 2 O -0.38 -12.67 7.15 -148.98 -1.07 -13.73 16 3 C 0.16 5.48 0.72 -12.29 -0.01 5.47 16 4 C -0.17 -5.12 7.82 71.98 0.56 -4.56 16 5 C 0.54 23.82 6.85 87.66 0.60 24.42 16 6 O -0.58 -28.63 14.95 -3.04 -0.05 -28.68 16 7 N -0.62 -28.28 3.58 -840.26 -3.01 -31.29 16 8 C 0.11 5.00 8.23 86.48 0.71 5.71 16 9 C 0.22 11.09 1.44 -10.88 -0.02 11.08 16 10 O -0.59 -31.92 13.48 -148.98 -2.01 -33.92 16 11 C -0.56 -28.59 8.62 25.60 0.22 -28.37 16 12 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 13 C 0.03 1.73 5.40 84.66 0.46 2.18 16 14 N -0.91 -46.57 11.09 21.45 0.24 -46.33 16 15 Si 0.97 39.66 29.54 68.60 2.03 41.69 16 16 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 18 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 19 C 0.10 4.67 7.41 86.48 0.64 5.31 16 20 C -0.16 -5.06 4.27 -19.82 -0.08 -5.15 16 21 C -0.09 -2.33 7.60 22.26 0.17 -2.16 16 22 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 23 C -0.08 -1.36 10.04 22.26 0.22 -1.14 16 24 C -0.17 -3.87 10.03 22.31 0.22 -3.65 16 25 C 0.11 3.35 6.19 22.38 0.14 3.49 16 26 F -0.14 -5.14 13.19 44.97 0.59 -4.54 16 27 H 0.07 1.35 5.03 -2.39 -0.01 1.34 16 28 H 0.06 1.16 6.68 -2.39 -0.02 1.15 16 29 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.10 2.30 6.62 -2.39 -0.02 2.29 16 32 H 0.08 2.35 5.87 -2.39 -0.01 2.34 16 33 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 34 H 0.10 4.33 8.09 -2.39 -0.02 4.31 16 35 H 0.39 21.17 6.46 -74.06 -0.48 20.69 16 36 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 37 H 0.08 3.58 8.09 -2.39 -0.02 3.56 16 38 H 0.08 3.59 6.58 -2.39 -0.02 3.57 16 39 H 0.14 3.51 5.67 -2.91 -0.02 3.49 16 40 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -66.74 342.01 2.43 -64.31 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: 0.59 Total: 40.95 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.11 Total: 11.56 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.77 Total: -77.62 kcal Atomic # 8 Polarization: -73.22 SS G_CDS: -3.12 Total: -76.34 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.59 Total: -4.54 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -66.74 2.43 -64.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193987294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.556 kcal (2) G-P(sol) polarization free energy of solvation -66.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds