Wall clock time and date at job start Tue Mar 31 2020 14:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47167 * 2 1 4 4 C 1.53006 * 109.47204 * 119.99431 * 2 1 3 5 5 H 1.09000 * 109.47433 * 300.00527 * 4 2 1 6 6 C 1.53007 * 109.46594 * 60.00217 * 4 2 1 7 7 C 1.52999 * 109.46935 * 184.99959 * 6 4 2 8 8 O 1.42898 * 109.47076 * 180.02562 * 7 6 4 9 9 N 1.46495 * 109.47132 * 179.97438 * 4 2 1 10 10 C 1.34779 * 119.99734 * 85.00852 * 9 4 2 11 11 O 1.21612 * 120.00142 * 359.97438 * 10 9 4 12 12 C 1.47429 * 120.00131 * 179.97438 * 10 9 4 13 13 C 1.39685 * 120.21406 * 359.97438 * 12 10 9 14 14 C 1.37799 * 119.93741 * 179.97438 * 13 12 10 15 15 C 1.38661 * 120.38442 * 0.02562 * 14 13 12 16 16 C 1.37908 * 120.43436 * 359.97438 * 15 14 13 17 17 C 1.39110 * 120.05246 * 359.74272 * 16 15 14 18 18 S 1.76205 * 120.18753 * 180.25484 * 17 16 15 19 19 C 1.76195 * 100.00023 * 6.86970 * 18 17 16 20 20 H 1.08000 * 120.00294 * 5.65570 * 19 18 17 21 21 C 1.38807 * 119.99815 * 185.65581 * 19 18 17 22 22 N 1.31553 * 120.00109 * 179.97438 * 21 19 18 23 23 Si 1.86811 * 119.99988 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46740 * 89.99763 * 23 21 19 25 25 H 1.48498 * 109.46830 * 209.99612 * 23 21 19 26 26 H 1.48498 * 109.46967 * 329.99913 * 23 21 19 27 27 H 1.09000 * 109.47355 * 299.99994 * 1 2 3 28 28 H 1.09004 * 109.47006 * 60.00021 * 1 2 3 29 29 H 1.08996 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47693 * 239.99616 * 2 1 3 31 31 H 1.08994 * 109.47316 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46705 * 300.00186 * 3 2 1 33 33 H 1.09000 * 109.46978 * 59.99775 * 3 2 1 34 34 H 1.08996 * 109.47162 * 305.00158 * 6 4 2 35 35 H 1.08997 * 109.46754 * 65.00217 * 6 4 2 36 36 H 1.09003 * 109.47084 * 300.00326 * 7 6 4 37 37 H 1.09006 * 109.46936 * 59.99947 * 7 6 4 38 38 H 0.96700 * 113.99670 * 179.97438 * 8 7 6 39 39 H 0.97000 * 120.00500 * 265.00545 * 9 4 2 40 40 H 1.08004 * 120.02800 * 0.02562 * 13 12 10 41 41 H 1.08002 * 119.80892 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.77797 * 179.97438 * 15 14 13 43 43 H 1.08002 * 119.97008 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99865 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 1.9347 -2.8477 2.5567 8 8 1.4589 -4.1951 2.5565 9 7 3.5050 -0.7217 1.2490 10 6 4.1793 0.3360 1.7421 11 8 3.5717 1.2910 2.1868 12 6 5.6536 0.3353 1.7423 13 6 6.3561 -0.7594 1.2331 14 6 7.7341 -0.7537 1.2357 15 6 8.4300 0.3335 1.7419 16 6 7.7523 1.4225 2.2484 17 6 6.3613 1.4385 2.2494 18 16 5.4917 2.8309 2.8896 19 6 6.8398 3.9288 3.1750 20 1 7.8358 3.6542 2.8604 21 6 6.6218 5.1466 3.8044 22 7 7.6284 5.9662 4.0180 23 14 4.8989 5.6219 4.3480 24 1 4.6687 5.1456 5.7356 25 1 4.7550 7.0991 4.3014 26 1 3.9035 4.9986 3.4391 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.4437 -2.1650 1.1597 35 1 1.9647 -2.7027 0.4076 36 1 3.0211 -2.8463 2.6463 37 1 1.5001 -2.3086 3.3985 38 1 1.6802 -4.6905 3.3570 39 1 3.9897 -1.4832 0.8940 40 1 5.8197 -1.6090 0.8371 41 1 8.2751 -1.6014 0.8418 42 1 9.5100 0.3273 1.7394 43 1 8.3019 2.2655 2.6405 44 1 7.4761 6.8171 4.4581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223346077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:41 Heat of formation + Delta-G solvation = -94.476068 kcal Electronic energy + Delta-G solvation = -25445.432530 eV Core-core repulsion = 21873.568266 eV Total energy + Delta-G solvation = -3571.864263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35498 -39.43827 -38.24554 -37.12412 -34.81952 -34.52051 -32.51052 -31.83737 -31.45635 -27.98859 -27.89423 -26.66838 -24.57011 -23.48114 -22.54745 -21.72476 -21.11253 -19.98647 -18.76847 -18.10507 -17.67592 -17.31121 -17.00897 -16.48341 -16.11819 -15.92913 -15.55548 -15.28453 -15.18275 -15.09120 -14.77509 -14.25856 -14.18031 -13.66882 -13.58370 -13.50917 -13.33072 -13.13050 -13.09503 -12.93055 -12.50931 -12.41677 -12.27858 -12.20171 -11.93108 -11.74340 -11.54740 -11.49229 -11.36021 -11.28938 -10.85308 -10.57449 -10.03811 -9.97436 -9.76371 -8.65611 -8.59852 -6.30013 -0.00514 0.47675 1.00568 1.22096 1.39415 1.64633 2.03104 2.14194 2.23898 2.68279 2.78009 2.99872 3.18291 3.85063 3.93601 3.96441 4.02246 4.11547 4.19126 4.23461 4.33234 4.50428 4.56365 4.59572 4.63176 4.66867 4.80751 4.83258 4.83275 4.99788 5.02797 5.07118 5.10606 5.19289 5.26202 5.37058 5.40074 5.49446 5.52744 5.62116 5.65355 5.68804 6.05540 6.16506 6.66853 6.84254 6.87987 7.40113 8.51499 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.004316 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.313498 B = 6486.289545 C = 7769.781161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.136 4.136 4 C 0.157 3.843 5 H 0.067 0.933 6 C -0.118 4.118 7 C 0.074 3.926 8 O -0.589 6.589 9 N -0.709 5.709 10 C 0.553 3.447 11 O -0.542 6.542 12 C -0.173 4.173 13 C -0.056 4.056 14 C -0.149 4.149 15 C -0.074 4.074 16 C -0.171 4.171 17 C -0.056 4.056 18 S 0.031 5.969 19 C -0.587 4.587 20 H 0.078 0.922 21 C 0.054 3.946 22 N -0.908 5.908 23 Si 0.906 3.094 24 H -0.258 1.258 25 H -0.254 1.254 26 H -0.239 1.239 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.397 0.603 39 H 0.411 0.589 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 -21.841 -7.930 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.194 4.194 4 C 0.052 3.948 5 H 0.085 0.915 6 C -0.156 4.156 7 C -0.004 4.004 8 O -0.398 6.398 9 N -0.363 5.363 10 C 0.341 3.659 11 O -0.422 6.422 12 C -0.185 4.185 13 C -0.075 4.075 14 C -0.171 4.171 15 C -0.095 4.095 16 C -0.196 4.196 17 C -0.173 4.173 18 S 0.286 5.714 19 C -0.734 4.734 20 H 0.096 0.904 21 C -0.152 4.152 22 N -0.545 5.545 23 Si 0.727 3.273 24 H -0.183 1.183 25 H -0.178 1.178 26 H -0.163 1.163 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.246 0.754 39 H 0.249 0.751 40 H 0.182 0.818 41 H 0.185 0.815 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.400 -20.349 -7.795 25.072 hybrid contribution 1.906 0.718 0.879 2.218 sum -10.494 -19.630 -6.916 23.309 Atomic orbital electron populations 1.21872 0.93369 1.02901 1.02037 1.21469 0.96944 0.95196 0.98048 1.21808 1.00102 0.96949 1.00530 1.20949 0.79027 0.96146 0.98631 0.91486 1.21782 1.03358 0.92359 0.98091 1.22157 0.98068 0.82526 0.97614 1.86385 1.81584 1.24996 1.46790 1.45745 1.06929 1.19899 1.63739 1.18213 0.87096 0.82803 0.77757 1.90764 1.69464 1.34782 1.47162 1.19601 0.92797 0.96713 1.09421 1.21481 0.94939 0.95811 0.95295 1.21366 0.93932 0.99345 1.02435 1.21518 1.00951 0.92309 0.94696 1.21449 0.93095 1.00759 1.04303 1.22538 0.97205 0.97896 0.99631 1.83968 1.09591 1.05706 1.72088 1.23696 0.98120 1.06466 1.45105 0.90438 1.25574 1.00935 0.95053 0.93674 1.69990 1.32980 1.10582 1.40931 0.86031 0.80570 0.79731 0.80930 1.18259 1.17800 1.16305 0.93377 0.91952 0.90379 0.89624 0.94826 0.92972 0.94305 0.88576 0.89206 0.93044 0.94211 0.75382 0.75138 0.81760 0.81540 0.83801 0.87203 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.85 71.98 0.64 -1.71 16 2 C -0.10 -1.94 2.69 -10.79 -0.03 -1.97 16 3 C -0.14 -3.90 7.72 71.98 0.56 -3.35 16 4 C 0.16 3.17 1.84 45.00 0.08 3.26 16 5 H 0.07 1.73 7.58 -2.39 -0.02 1.72 16 6 C -0.12 -1.70 4.91 30.60 0.15 -1.55 16 7 C 0.07 1.13 6.93 71.98 0.50 1.63 16 8 O -0.59 -8.68 13.66 -148.98 -2.04 -10.72 16 9 N -0.71 -15.68 4.37 -445.78 -1.95 -17.63 16 10 C 0.55 18.48 6.10 86.66 0.53 19.01 16 11 O -0.54 -22.80 10.89 -4.07 -0.04 -22.85 16 12 C -0.17 -6.03 5.89 -19.95 -0.12 -6.14 16 13 C -0.06 -1.34 9.53 22.52 0.21 -1.13 16 14 C -0.15 -3.45 10.02 22.27 0.22 -3.23 16 15 C -0.07 -2.26 10.03 22.29 0.22 -2.04 16 16 C -0.17 -7.25 9.22 22.40 0.21 -7.04 16 17 C -0.06 -2.48 6.14 23.04 0.14 -2.34 16 18 S 0.03 1.64 16.53 -56.49 -0.93 0.70 16 19 C -0.59 -35.31 9.54 67.96 0.65 -34.67 16 20 H 0.08 4.92 5.21 -2.91 -0.02 4.90 16 21 C 0.05 3.23 5.50 84.87 0.47 3.69 16 22 N -0.91 -56.00 13.96 21.65 0.30 -55.70 16 23 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 24 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.25 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.08 0.95 6.32 -2.39 -0.02 0.94 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.12 5.77 -2.39 -0.01 1.11 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.30 7.53 -2.39 -0.02 1.28 16 34 H 0.10 1.29 6.17 -2.39 -0.01 1.27 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 0.75 7.75 -2.39 -0.02 0.73 16 37 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.40 2.69 9.12 -74.06 -0.68 2.02 16 39 H 0.41 6.24 6.63 -92.71 -0.61 5.62 16 40 H 0.17 2.29 6.40 -2.91 -0.02 2.27 16 41 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 43 H 0.11 5.42 5.04 -2.91 -0.01 5.40 16 44 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -77.83 359.82 1.39 -76.45 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.29 Total: 20.02 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.43 Total: -37.57 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.64 Total: -73.33 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -2.08 Total: -33.57 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -0.93 Total: 0.70 kcal Total: -77.83 1.39 -76.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223346077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.031 kcal (2) G-P(sol) polarization free energy of solvation -77.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds