Wall clock time and date at job start Tue Mar 31 2020 14:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47434 * 2 1 4 4 C 1.53004 * 109.46965 * 119.99726 * 2 1 3 5 5 H 1.09002 * 109.47312 * 299.99645 * 4 2 1 6 6 C 1.53000 * 109.47512 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47595 * 174.99833 * 6 4 2 8 8 O 1.42900 * 109.47281 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47237 * 59.99471 * 4 2 1 10 10 C 1.34774 * 120.00150 * 275.00170 * 9 4 2 11 11 O 1.21611 * 119.99964 * 359.97438 * 10 9 4 12 12 C 1.47433 * 119.99869 * 179.97438 * 10 9 4 13 13 C 1.39681 * 120.21363 * 0.02930 * 12 10 9 14 14 C 1.37805 * 119.93452 * 179.97438 * 13 12 10 15 15 C 1.38654 * 120.38625 * 0.02562 * 14 13 12 16 16 C 1.37919 * 120.43362 * 0.02562 * 15 14 13 17 17 C 1.39103 * 120.05168 * 359.97438 * 16 15 14 18 18 S 1.76206 * 120.18762 * 180.02562 * 17 16 15 19 19 C 1.76190 * 99.99940 * 6.84043 * 18 17 16 20 20 H 1.07998 * 120.00270 * 5.65109 * 19 18 17 21 21 C 1.38809 * 120.00047 * 185.65490 * 19 18 17 22 22 N 1.31555 * 120.00018 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00216 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00065 * 23 21 19 25 25 H 1.48500 * 109.46864 * 209.99830 * 23 21 19 26 26 H 1.48502 * 109.47056 * 329.99897 * 23 21 19 27 27 H 1.09005 * 109.47388 * 300.00797 * 1 2 3 28 28 H 1.09003 * 109.47089 * 60.00172 * 1 2 3 29 29 H 1.08998 * 109.47551 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47089 * 239.98757 * 2 1 3 31 31 H 1.09002 * 109.46874 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46621 * 299.99491 * 3 2 1 33 33 H 1.08997 * 109.47372 * 59.99549 * 3 2 1 34 34 H 1.09003 * 109.47028 * 295.00450 * 6 4 2 35 35 H 1.09003 * 109.46737 * 54.99429 * 6 4 2 36 36 H 1.08998 * 109.47030 * 300.00593 * 7 6 4 37 37 H 1.09004 * 109.46887 * 59.99991 * 7 6 4 38 38 H 0.96702 * 113.99663 * 179.97438 * 8 7 6 39 39 H 0.97000 * 119.99614 * 95.00384 * 9 4 2 40 40 H 1.07997 * 120.03131 * 359.97438 * 13 12 10 41 41 H 1.08008 * 119.80557 * 180.02562 * 14 13 12 42 42 H 1.08001 * 119.78248 * 180.28485 * 15 14 13 43 43 H 1.07998 * 119.97190 * 179.97438 * 16 15 14 44 44 H 0.96996 * 120.00225 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7218 1.2491 7 6 4.0800 -1.3314 2.5565 8 8 5.5089 -1.3314 2.5565 9 7 1.5515 -2.1024 1.2495 10 6 0.3295 -2.3850 1.7428 11 8 -0.3675 -1.4936 2.1882 12 6 -0.1622 -3.7750 1.7423 13 6 0.6349 -4.8024 1.2324 14 6 0.1697 -6.0996 1.2353 15 6 -1.0873 -6.3928 1.7417 16 6 -1.8877 -5.3903 2.2481 17 6 -1.4363 -4.0745 2.2540 18 16 -2.4557 -2.7910 2.9007 19 6 -3.7770 -3.7524 3.5597 20 1 -3.7141 -4.8305 3.5567 21 6 -4.8989 -3.1241 4.0825 22 7 -4.9754 -1.8108 4.0865 23 14 -6.3002 -4.1434 4.7804 24 1 -6.0658 -4.3820 6.2273 25 1 -7.5807 -3.4134 4.6002 26 1 -6.3678 -5.4449 4.0686 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 3.1300 1.4423 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.9329 -1.3116 0.4073 35 1 3.9336 0.3018 1.1592 36 1 3.7169 -0.7417 3.3982 37 1 3.7162 -2.3550 2.6463 38 1 5.9022 -1.7043 3.3573 39 1 2.1076 -2.8135 0.8945 40 1 1.6147 -4.5804 0.8362 41 1 0.7880 -6.8925 0.8409 42 1 -1.4402 -7.4135 1.7434 43 1 -2.8657 -5.6270 2.6403 44 1 -5.7596 -1.3717 4.4514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223346130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:45 Heat of formation + Delta-G solvation = -72.957035 kcal Electronic energy + Delta-G solvation = -25353.366454 eV Core-core repulsion = 21782.435326 eV Total energy + Delta-G solvation = -3570.931128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97424 -38.07599 -37.12126 -36.10378 -33.26430 -32.76144 -31.36522 -30.28134 -30.14816 -26.85006 -25.83245 -25.61211 -23.14996 -21.99746 -21.58563 -20.21936 -20.02531 -18.22619 -17.53097 -16.98561 -16.34891 -15.70975 -15.27860 -15.14165 -15.12674 -14.49654 -14.23147 -14.09497 -13.76339 -13.69341 -13.09480 -13.01350 -12.91193 -12.55369 -12.36042 -12.05756 -11.86572 -11.59747 -11.53546 -11.28507 -11.21381 -11.19647 -10.99784 -10.91931 -10.61769 -10.54092 -10.32861 -10.11689 -9.80296 -9.61429 -9.49482 -8.75348 -8.67745 -8.33760 -8.05459 -6.53952 -6.47120 -4.17412 1.53007 2.00958 3.09662 3.12049 3.18715 3.40769 3.50157 3.53957 3.94157 4.05756 4.47568 4.82936 4.86481 4.93971 4.94703 5.12228 5.13707 5.18483 5.30288 5.34262 5.41234 5.47541 5.56973 5.59478 5.72357 5.82636 5.84666 5.95066 6.01788 6.10468 6.11436 6.14698 6.26487 6.38212 6.46898 6.58825 6.75955 6.84714 6.86380 7.02785 7.12736 7.41465 7.43861 7.58343 7.92397 8.15190 8.81642 8.99304 10.55999 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003810 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.029127 B = 7346.978101 C = 8368.312264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C -0.148 4.148 4 C 0.155 3.845 5 H 0.091 0.909 6 C -0.128 4.128 7 C 0.074 3.926 8 O -0.578 6.578 9 N -0.735 5.735 10 C 0.553 3.447 11 O -0.503 6.503 12 C -0.178 4.178 13 C -0.062 4.062 14 C -0.187 4.187 15 C -0.077 4.077 16 C -0.154 4.154 17 C -0.057 4.057 18 S 0.187 5.813 19 C -0.597 4.597 20 H 0.090 0.910 21 C 0.084 3.916 22 N -0.858 5.858 23 Si 0.918 3.082 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.268 1.268 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.379 0.621 39 H 0.393 0.607 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.138 0.862 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.796 -0.647 -6.023 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.206 4.206 4 C 0.050 3.950 5 H 0.109 0.891 6 C -0.166 4.166 7 C -0.004 4.004 8 O -0.384 6.384 9 N -0.389 5.389 10 C 0.343 3.657 11 O -0.380 6.380 12 C -0.193 4.193 13 C -0.082 4.082 14 C -0.212 4.212 15 C -0.099 4.099 16 C -0.179 4.179 17 C -0.177 4.177 18 S 0.452 5.548 19 C -0.744 4.744 20 H 0.108 0.892 21 C -0.127 4.127 22 N -0.490 5.490 23 Si 0.743 3.257 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.226 0.774 39 H 0.228 0.772 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.156 0.844 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.894 1.939 -6.037 16.188 hybrid contribution -0.693 -2.787 0.715 2.960 sum 14.201 -0.848 -5.321 15.189 Atomic orbital electron populations 1.21876 0.93560 1.02826 1.01487 1.21493 0.97368 0.95796 0.97567 1.21899 1.00574 0.95945 1.02140 1.20884 0.91507 0.83180 0.99407 0.89109 1.21873 0.94365 1.02922 0.97416 1.22213 0.80295 0.99984 0.97904 1.86432 1.20250 1.86418 1.45287 1.45960 1.18458 1.08804 1.65682 1.18228 0.80915 0.88725 0.77860 1.90792 1.54981 1.47243 1.44944 1.19143 0.95919 0.92526 1.11750 1.20895 0.97474 0.92821 0.97013 1.20631 0.97406 0.95948 1.07190 1.21084 0.94040 0.98342 0.96474 1.21439 1.01372 0.91873 1.03193 1.23099 0.96995 1.00235 0.97386 1.84717 1.11175 1.02809 1.56127 1.24068 1.06836 0.97076 1.46382 0.89205 1.25086 0.98002 0.95183 0.94417 1.69970 1.29721 1.08021 1.41322 0.86164 0.80034 0.79974 0.79484 1.19881 1.20474 1.19245 0.91455 0.93934 0.92171 0.91524 0.92599 0.92640 0.92356 0.90881 0.89488 0.93426 0.93231 0.77420 0.77218 0.87270 0.87151 0.87078 0.84428 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.72 37.15 0.29 -1.84 16 2 C -0.10 -1.22 2.69 -90.62 -0.24 -1.46 16 3 C -0.15 -1.49 8.85 37.16 0.33 -1.16 16 4 C 0.16 1.87 1.84 -67.93 -0.12 1.75 16 5 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 6 C -0.13 -1.25 4.91 -26.73 -0.13 -1.38 16 7 C 0.07 0.73 6.93 37.16 0.26 0.99 16 8 O -0.58 -5.62 13.66 -35.23 -0.48 -6.10 16 9 N -0.73 -9.81 4.37 -54.87 -0.24 -10.05 16 10 C 0.55 10.03 6.10 -12.52 -0.08 9.95 16 11 O -0.50 -10.85 10.89 5.27 0.06 -10.80 16 12 C -0.18 -3.39 5.89 -104.75 -0.62 -4.01 16 13 C -0.06 -0.95 9.53 -39.20 -0.37 -1.33 16 14 C -0.19 -2.84 10.02 -39.59 -0.40 -3.23 16 15 C -0.08 -1.30 10.03 -39.54 -0.40 -1.70 16 16 C -0.15 -3.17 9.22 -39.38 -0.36 -3.53 16 17 C -0.06 -1.28 6.14 -38.40 -0.24 -1.51 16 18 S 0.19 4.90 18.56 -107.50 -2.00 2.91 16 19 C -0.60 -16.29 9.00 30.94 0.28 -16.01 16 20 H 0.09 2.33 4.98 -52.49 -0.26 2.07 16 21 C 0.08 2.29 5.49 -17.46 -0.10 2.19 16 22 N -0.86 -24.48 13.22 55.49 0.73 -23.75 16 23 Si 0.92 20.54 29.55 -169.99 -5.02 15.52 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H 0.07 1.15 7.53 -51.93 -0.39 0.76 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.06 5.77 -51.93 -0.30 0.76 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.81 6.18 -51.93 -0.32 0.49 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.49 7.75 -51.93 -0.40 0.09 16 38 H 0.38 2.10 9.12 45.56 0.42 2.52 16 39 H 0.39 4.31 6.63 -40.82 -0.27 4.04 16 40 H 0.11 1.27 6.40 -52.49 -0.34 0.94 16 41 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.14 2.98 5.04 -52.49 -0.26 2.71 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -31.64 362.51 -8.76 -40.40 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.37 Total: 8.70 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -1.90 Total: -22.29 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.49 Total: -33.79 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.42 Total: -16.90 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -2.00 Total: 2.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.64 -8.76 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223346130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.561 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds