Wall clock time and date at job start Tue Mar 31 2020 14:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47434 * 2 1 4 4 C 1.53004 * 109.46965 * 119.99726 * 2 1 3 5 5 H 1.09002 * 109.47312 * 299.99645 * 4 2 1 6 6 C 1.53000 * 109.47512 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47595 * 174.99833 * 6 4 2 8 8 O 1.42900 * 109.47281 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47237 * 59.99471 * 4 2 1 10 10 C 1.34774 * 120.00150 * 275.00170 * 9 4 2 11 11 O 1.21611 * 119.99964 * 359.97438 * 10 9 4 12 12 C 1.47433 * 119.99869 * 179.97438 * 10 9 4 13 13 C 1.39681 * 120.21363 * 0.02930 * 12 10 9 14 14 C 1.37805 * 119.93452 * 179.97438 * 13 12 10 15 15 C 1.38654 * 120.38625 * 0.02562 * 14 13 12 16 16 C 1.37919 * 120.43362 * 0.02562 * 15 14 13 17 17 C 1.39103 * 120.05168 * 359.97438 * 16 15 14 18 18 S 1.76206 * 120.18762 * 180.02562 * 17 16 15 19 19 C 1.76190 * 99.99940 * 6.84043 * 18 17 16 20 20 H 1.07998 * 120.00270 * 5.65109 * 19 18 17 21 21 C 1.38809 * 120.00047 * 185.65490 * 19 18 17 22 22 N 1.31555 * 120.00018 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00216 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00065 * 23 21 19 25 25 H 1.48500 * 109.46864 * 209.99830 * 23 21 19 26 26 H 1.48502 * 109.47056 * 329.99897 * 23 21 19 27 27 H 1.09005 * 109.47388 * 300.00797 * 1 2 3 28 28 H 1.09003 * 109.47089 * 60.00172 * 1 2 3 29 29 H 1.08998 * 109.47551 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47089 * 239.98757 * 2 1 3 31 31 H 1.09002 * 109.46874 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46621 * 299.99491 * 3 2 1 33 33 H 1.08997 * 109.47372 * 59.99549 * 3 2 1 34 34 H 1.09003 * 109.47028 * 295.00450 * 6 4 2 35 35 H 1.09003 * 109.46737 * 54.99429 * 6 4 2 36 36 H 1.08998 * 109.47030 * 300.00593 * 7 6 4 37 37 H 1.09004 * 109.46887 * 59.99991 * 7 6 4 38 38 H 0.96702 * 113.99663 * 179.97438 * 8 7 6 39 39 H 0.97000 * 119.99614 * 95.00384 * 9 4 2 40 40 H 1.07997 * 120.03131 * 359.97438 * 13 12 10 41 41 H 1.08008 * 119.80557 * 180.02562 * 14 13 12 42 42 H 1.08001 * 119.78248 * 180.28485 * 15 14 13 43 43 H 1.07998 * 119.97190 * 179.97438 * 16 15 14 44 44 H 0.96996 * 120.00225 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7218 1.2491 7 6 4.0800 -1.3314 2.5565 8 8 5.5089 -1.3314 2.5565 9 7 1.5515 -2.1024 1.2495 10 6 0.3295 -2.3850 1.7428 11 8 -0.3675 -1.4936 2.1882 12 6 -0.1622 -3.7750 1.7423 13 6 0.6349 -4.8024 1.2324 14 6 0.1697 -6.0996 1.2353 15 6 -1.0873 -6.3928 1.7417 16 6 -1.8877 -5.3903 2.2481 17 6 -1.4363 -4.0745 2.2540 18 16 -2.4557 -2.7910 2.9007 19 6 -3.7770 -3.7524 3.5597 20 1 -3.7141 -4.8305 3.5567 21 6 -4.8989 -3.1241 4.0825 22 7 -4.9754 -1.8108 4.0865 23 14 -6.3002 -4.1434 4.7804 24 1 -6.0658 -4.3820 6.2273 25 1 -7.5807 -3.4134 4.6002 26 1 -6.3678 -5.4449 4.0686 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 3.1300 1.4423 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.9329 -1.3116 0.4073 35 1 3.9336 0.3018 1.1592 36 1 3.7169 -0.7417 3.3982 37 1 3.7162 -2.3550 2.6463 38 1 5.9022 -1.7043 3.3573 39 1 2.1076 -2.8135 0.8945 40 1 1.6147 -4.5804 0.8362 41 1 0.7880 -6.8925 0.8409 42 1 -1.4402 -7.4135 1.7434 43 1 -2.8657 -5.6270 2.6403 44 1 -5.7596 -1.3717 4.4514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223346130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:44 Heat of formation + Delta-G solvation = -95.424307 kcal Electronic energy + Delta-G solvation = -25354.340708 eV Core-core repulsion = 21782.435326 eV Total energy + Delta-G solvation = -3571.905382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29750 -39.36973 -38.21620 -37.11422 -34.75936 -34.49001 -32.48248 -31.75916 -31.40713 -27.89549 -27.83104 -26.64944 -24.49973 -23.39886 -22.53871 -21.64991 -21.09792 -19.88080 -18.77454 -18.10555 -17.59676 -17.17546 -16.96399 -16.45208 -16.05023 -15.86988 -15.60099 -15.25675 -15.16358 -14.90705 -14.65988 -14.36009 -14.16305 -13.57183 -13.48476 -13.30423 -13.27043 -13.02732 -12.97977 -12.85820 -12.54193 -12.42720 -12.21043 -12.05165 -11.92910 -11.73267 -11.54332 -11.44488 -11.39043 -11.16589 -10.85615 -10.39720 -9.99018 -9.82441 -9.72524 -8.44900 -8.43694 -6.22635 0.07614 0.55439 1.26518 1.35408 1.44292 1.66671 2.09487 2.18728 2.32829 2.88377 3.07019 3.18148 3.26274 3.87839 3.97510 3.99974 4.05132 4.11449 4.19144 4.27385 4.33783 4.50218 4.59215 4.63155 4.65553 4.68818 4.82791 4.83266 4.88362 4.99560 5.03096 5.11115 5.12552 5.18980 5.26329 5.37615 5.41424 5.47108 5.53117 5.58837 5.68941 5.70989 6.10734 6.17459 6.71820 6.87591 6.96646 7.47299 8.60340 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003810 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.029127 B = 7346.978101 C = 8368.312264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.157 3.843 5 H 0.063 0.937 6 C -0.117 4.117 7 C 0.075 3.925 8 O -0.588 6.588 9 N -0.711 5.711 10 C 0.549 3.451 11 O -0.542 6.542 12 C -0.181 4.181 13 C -0.055 4.055 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.177 4.177 17 C -0.074 4.074 18 S 0.073 5.927 19 C -0.605 4.605 20 H 0.092 0.908 21 C 0.026 3.974 22 N -0.904 5.904 23 Si 0.990 3.010 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.258 1.258 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.051 0.949 38 H 0.397 0.603 39 H 0.409 0.591 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.147 0.853 43 H 0.116 0.884 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.490 -3.525 -8.018 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.202 4.202 4 C 0.052 3.948 5 H 0.081 0.919 6 C -0.155 4.155 7 C -0.003 4.003 8 O -0.397 6.397 9 N -0.365 5.365 10 C 0.338 3.662 11 O -0.422 6.422 12 C -0.194 4.194 13 C -0.075 4.075 14 C -0.182 4.182 15 C -0.093 4.093 16 C -0.202 4.202 17 C -0.192 4.192 18 S 0.332 5.668 19 C -0.751 4.751 20 H 0.110 0.890 21 C -0.180 4.180 22 N -0.539 5.539 23 Si 0.812 3.188 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.182 1.182 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.246 0.754 39 H 0.247 0.753 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.164 0.836 43 H 0.134 0.866 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.706 -1.016 -8.079 20.401 hybrid contribution -1.471 -2.066 1.155 2.787 sum 17.235 -3.082 -6.923 18.828 Atomic orbital electron populations 1.21787 0.96472 1.00570 1.00386 1.21461 0.94572 0.97457 0.98057 1.21873 1.01959 0.94314 1.02010 1.20930 0.93385 0.81963 0.98501 0.91898 1.21775 0.91698 1.03948 0.98074 1.22142 0.80711 0.99850 0.97619 1.86381 1.19786 1.86744 1.46741 1.45742 1.16767 1.10087 1.63932 1.18323 0.81963 0.88177 0.77754 1.90805 1.56408 1.48237 1.46718 1.19565 0.95086 0.94262 1.10505 1.21440 0.98788 0.91945 0.95331 1.21305 0.96432 0.97000 1.03418 1.21516 0.94229 0.98917 0.94637 1.21437 1.01586 0.92327 1.04836 1.23010 0.97679 0.99422 0.99078 1.84869 1.14185 1.06533 1.61263 1.24275 1.07155 0.97098 1.46594 0.88996 1.26104 1.00704 0.96315 0.94870 1.70123 1.30597 1.09877 1.43342 0.85077 0.76528 0.78432 0.78796 1.19155 1.19810 1.18221 0.94654 0.92903 0.94993 0.89495 0.90250 0.91861 0.93536 0.89108 0.88544 0.94350 0.93117 0.75380 0.75265 0.82290 0.81872 0.83562 0.86602 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.72 71.98 0.56 -3.71 16 2 C -0.10 -2.16 2.69 -10.80 -0.03 -2.18 16 3 C -0.14 -2.65 8.85 71.98 0.64 -2.01 16 4 C 0.16 3.61 1.84 44.99 0.08 3.69 16 5 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 6 C -0.12 -1.94 4.91 30.59 0.15 -1.79 16 7 C 0.07 1.29 6.93 71.98 0.50 1.79 16 8 O -0.59 -9.60 13.66 -148.98 -2.04 -11.64 16 9 N -0.71 -17.78 4.37 -445.77 -1.95 -19.73 16 10 C 0.55 20.22 6.10 86.67 0.53 20.75 16 11 O -0.54 -25.25 10.89 -4.06 -0.04 -25.30 16 12 C -0.18 -6.77 5.89 -19.95 -0.12 -6.89 16 13 C -0.06 -1.45 9.53 22.52 0.21 -1.23 16 14 C -0.16 -3.85 10.02 22.27 0.22 -3.63 16 15 C -0.07 -2.17 10.03 22.29 0.22 -1.95 16 16 C -0.18 -7.35 9.22 22.40 0.21 -7.14 16 17 C -0.07 -3.42 6.14 23.04 0.14 -3.28 16 18 S 0.07 4.16 18.56 -56.49 -1.05 3.11 16 19 C -0.60 -35.40 9.00 67.96 0.61 -34.79 16 20 H 0.09 5.10 4.98 -2.91 -0.01 5.08 16 21 C 0.03 1.48 5.49 84.87 0.47 1.95 16 22 N -0.90 -55.49 13.22 21.65 0.29 -55.21 16 23 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 H 0.03 1.31 7.53 -2.38 -0.02 1.30 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 1.17 5.77 -2.39 -0.01 1.15 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.11 6.32 -2.39 -0.02 1.09 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 1.48 6.18 -2.39 -0.01 1.46 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.86 7.75 -2.38 -0.02 0.84 16 38 H 0.40 3.27 9.12 -74.06 -0.68 2.60 16 39 H 0.41 7.31 6.63 -92.71 -0.61 6.69 16 40 H 0.16 2.60 6.40 -2.91 -0.02 2.58 16 41 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.12 5.26 5.04 -2.91 -0.01 5.25 16 44 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -78.73 362.51 1.38 -77.35 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.25 Total: 25.65 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.39 Total: -40.41 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.66 Total: -74.93 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -2.08 Total: -36.93 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.05 Total: 3.11 kcal Total: -78.73 1.38 -77.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223346130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.073 kcal (2) G-P(sol) polarization free energy of solvation -78.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds