Wall clock time and date at job start Tue Mar 31 2020 14:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47088 * 2 1 4 4 C 1.52998 * 109.46820 * 120.00358 * 2 1 3 5 5 C 1.53000 * 109.47420 * 66.06929 * 4 2 1 6 6 H 1.08999 * 109.46921 * 302.76029 * 5 4 2 7 7 O 1.42892 * 109.47063 * 62.75838 * 5 4 2 8 8 C 1.53001 * 109.47199 * 182.76399 * 5 4 2 9 9 N 1.46502 * 109.47130 * 179.97438 * 8 5 4 10 10 C 1.34772 * 119.99931 * 179.97438 * 9 8 5 11 11 O 1.21615 * 119.99852 * 0.02562 * 10 9 8 12 12 C 1.47432 * 119.99954 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.21386 * 0.02562 * 12 10 9 14 14 C 1.37807 * 119.94180 * 180.02562 * 13 12 10 15 15 C 1.38662 * 120.37651 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43847 * 359.97438 * 15 14 13 17 17 C 1.39107 * 120.04875 * 359.71895 * 16 15 14 18 18 S 1.76202 * 120.18986 * 180.27768 * 17 16 15 19 19 C 1.76201 * 99.99821 * 352.64524 * 18 17 16 20 20 H 1.07999 * 120.00474 * 4.55001 * 19 18 17 21 21 C 1.38807 * 119.99956 * 184.55855 * 19 18 17 22 22 N 1.31560 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47111 * 59.99545 * 23 21 19 25 25 H 1.48497 * 109.47551 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47345 * 299.99831 * 23 21 19 27 27 H 1.09000 * 109.47178 * 300.00301 * 1 2 3 28 28 H 1.08999 * 109.46770 * 59.99520 * 1 2 3 29 29 H 1.08993 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46708 * 239.99699 * 2 1 3 31 31 H 1.08999 * 109.46818 * 184.93805 * 3 2 1 32 32 H 1.08993 * 109.47259 * 304.94013 * 3 2 1 33 33 H 1.09000 * 109.46980 * 64.94573 * 3 2 1 34 34 H 1.08998 * 109.47089 * 186.07350 * 4 2 1 35 35 H 1.09003 * 109.47000 * 306.06463 * 4 2 1 36 36 H 0.96703 * 114.00231 * 60.00660 * 7 5 4 37 37 H 1.09008 * 109.46831 * 299.99527 * 8 5 4 38 38 H 1.08994 * 109.47172 * 59.99520 * 8 5 4 39 39 H 0.96994 * 119.99647 * 0.02562 * 9 8 5 40 40 H 1.08006 * 120.03059 * 359.97438 * 13 12 10 41 41 H 1.07998 * 119.81359 * 180.02562 * 14 13 12 42 42 H 1.08001 * 119.78107 * 179.97438 * 15 14 13 43 43 H 1.08003 * 119.96987 * 180.02562 * 16 15 14 44 44 H 0.96998 * 119.99963 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6583 -2.2011 1.1752 6 1 0.5773 -2.2927 1.0699 7 8 2.2993 -2.8026 0.0487 8 6 2.1076 -2.9083 2.4555 9 7 1.7416 -4.3251 2.3849 10 6 2.0403 -5.1500 3.4079 11 8 2.6133 -4.7181 4.3899 12 6 1.6715 -6.5757 3.3372 13 6 1.0129 -7.0763 2.2118 14 6 0.6703 -8.4097 2.1518 15 6 0.9752 -9.2601 3.2038 16 6 1.6251 -8.7824 4.3225 17 6 1.9850 -7.4409 4.3993 18 16 2.8220 -6.8282 5.8236 19 6 2.7325 -8.2468 6.8649 20 1 2.3115 -9.1673 6.4885 21 6 3.2029 -8.1811 8.1692 22 7 3.7160 -7.0599 8.6278 23 14 3.1073 -9.6848 9.2734 24 1 3.8854 -10.7946 8.6668 25 1 3.6717 -9.3563 10.6071 26 1 1.6892 -10.0991 9.4240 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1264 1.4437 -0.0885 32 1 1.6063 1.9812 -0.8424 33 1 1.7508 1.9301 0.9310 34 1 3.1245 -0.6282 1.3053 35 1 1.5907 -0.2740 2.1359 36 1 3.2650 -2.7581 0.0754 37 1 3.1887 -2.8168 2.5608 38 1 1.6186 -2.4495 3.3147 39 1 1.2849 -4.6696 1.6015 40 1 0.7716 -6.4187 1.3897 41 1 0.1615 -8.7947 1.2805 42 1 0.7018 -10.3034 3.1468 43 1 1.8593 -9.4515 5.1373 44 1 4.0451 -7.0141 9.5391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230248148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:50 Heat of formation + Delta-G solvation = -80.663123 kcal Electronic energy + Delta-G solvation = -24348.394496 eV Core-core repulsion = 20777.129207 eV Total energy + Delta-G solvation = -3571.265289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.65707 -38.55783 -37.33246 -35.55458 -34.02535 -32.73967 -31.08715 -30.25899 -29.79153 -27.47317 -26.20703 -25.81341 -23.12329 -22.12970 -21.71836 -20.46761 -19.87855 -18.26688 -17.27595 -16.63022 -16.37657 -15.85362 -15.37112 -15.21104 -14.97685 -14.57852 -14.28122 -14.14241 -14.00071 -13.73086 -13.64160 -13.04624 -12.97240 -12.74078 -12.57271 -12.37035 -12.04116 -11.77331 -11.59225 -11.55961 -11.33902 -11.19941 -11.17484 -10.94269 -10.92277 -10.73272 -10.32866 -10.18203 -9.79546 -9.58308 -9.52853 -8.77659 -8.71091 -8.31238 -8.05389 -6.52081 -6.44455 -4.15418 1.55095 2.03654 3.11274 3.14778 3.18699 3.40404 3.47323 3.53755 4.07270 4.20462 4.40347 4.51129 4.55622 4.62903 4.89097 4.94568 4.96253 5.09988 5.14640 5.32773 5.34284 5.40112 5.42608 5.45118 5.56913 5.60941 5.61507 5.66513 5.75339 5.85071 5.88677 5.99573 6.07584 6.12763 6.13574 6.40397 6.60816 6.75426 6.87286 7.03967 7.14535 7.40284 7.46353 7.60960 7.94038 8.17341 8.81093 9.01335 10.58586 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.002767 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.597559 B =10117.493815 C =11382.938422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.145 4.145 5 C 0.094 3.906 6 H 0.106 0.894 7 O -0.558 6.558 8 C 0.091 3.909 9 N -0.733 5.733 10 C 0.551 3.449 11 O -0.511 6.511 12 C -0.177 4.177 13 C -0.060 4.060 14 C -0.187 4.187 15 C -0.077 4.077 16 C -0.154 4.154 17 C -0.056 4.056 18 S 0.182 5.818 19 C -0.596 4.596 20 H 0.091 0.909 21 C 0.083 3.917 22 N -0.859 5.859 23 Si 0.919 3.081 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.270 1.270 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.376 0.624 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 10.274 -17.003 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.184 4.184 5 C 0.035 3.965 6 H 0.123 0.877 7 O -0.364 6.364 8 C -0.034 4.034 9 N -0.388 5.388 10 C 0.340 3.660 11 O -0.388 6.388 12 C -0.192 4.192 13 C -0.080 4.080 14 C -0.211 4.211 15 C -0.099 4.099 16 C -0.179 4.179 17 C -0.176 4.176 18 S 0.447 5.553 19 C -0.743 4.743 20 H 0.108 0.892 21 C -0.127 4.127 22 N -0.492 5.492 23 Si 0.744 3.256 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.195 1.195 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.224 0.776 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.234 0.766 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.402 11.765 -15.665 20.080 hybrid contribution -0.341 -2.201 0.241 2.241 sum -4.743 9.564 -15.423 18.758 Atomic orbital electron populations 1.21904 0.95321 1.01925 1.01615 1.21035 0.95895 0.95795 0.98452 1.21853 1.00890 0.96098 1.01722 1.22288 1.01876 0.95128 0.99067 1.22253 0.98380 0.91034 0.84831 0.87655 1.86560 1.24289 1.81323 1.44182 1.21955 1.01015 0.82206 0.98207 1.45710 1.63161 1.08591 1.21366 1.18337 0.79221 0.85997 0.82432 1.90787 1.40757 1.76539 1.30764 1.19109 1.10372 0.92303 0.97410 1.20918 0.96067 0.95476 0.95570 1.20643 1.06909 0.93853 0.99719 1.21089 0.96619 0.98753 0.93421 1.21430 1.02063 0.95109 0.99317 1.23074 0.98184 0.95866 1.00492 1.84731 1.55577 1.14832 1.00191 1.24029 1.48027 1.01548 1.00696 0.89176 1.25091 0.93388 0.97195 0.97070 1.69970 1.36131 1.25602 1.17450 0.86204 0.79031 0.81463 0.78882 1.19495 1.20565 1.19488 0.92763 0.92841 0.92365 0.90412 0.92782 0.92765 0.92736 0.91187 0.90573 0.77631 0.91454 0.90851 0.76581 0.87073 0.87053 0.87014 0.84402 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.97 37.16 0.33 -0.71 16 2 C -0.09 -0.65 2.86 -90.62 -0.26 -0.91 16 3 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 4 C -0.15 -1.07 4.36 -26.73 -0.12 -1.18 16 5 C 0.09 0.82 2.91 -26.73 -0.08 0.74 16 6 H 0.11 0.91 6.48 -51.93 -0.34 0.58 16 7 O -0.56 -4.98 12.43 -35.23 -0.44 -5.41 16 8 C 0.09 1.08 5.34 -4.04 -0.02 1.06 16 9 N -0.73 -10.48 5.40 -61.38 -0.33 -10.81 16 10 C 0.55 10.77 7.75 -12.52 -0.10 10.67 16 11 O -0.51 -12.01 13.77 5.26 0.07 -11.94 16 12 C -0.18 -3.54 5.89 -104.76 -0.62 -4.16 16 13 C -0.06 -0.98 9.53 -39.21 -0.37 -1.35 16 14 C -0.19 -2.93 10.02 -39.58 -0.40 -3.32 16 15 C -0.08 -1.32 10.03 -39.54 -0.40 -1.72 16 16 C -0.15 -3.25 9.25 -39.38 -0.36 -3.61 16 17 C -0.06 -1.30 6.14 -38.39 -0.24 -1.54 16 18 S 0.18 4.93 18.56 -107.50 -2.00 2.94 16 19 C -0.60 -16.55 9.08 30.94 0.28 -16.27 16 20 H 0.09 2.36 4.84 -52.49 -0.25 2.11 16 21 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 22 N -0.86 -24.90 13.22 55.49 0.73 -24.16 16 23 Si 0.92 20.77 29.55 -169.99 -5.02 15.75 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 30 H 0.08 0.60 7.59 -51.93 -0.39 0.20 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.38 2.47 9.05 45.56 0.41 2.88 16 37 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.40 4.86 6.38 -40.82 -0.26 4.59 16 40 H 0.11 1.40 6.40 -52.48 -0.34 1.07 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.14 3.01 4.97 -52.48 -0.26 2.75 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -32.47 371.03 -9.04 -41.51 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.56 Total: 7.26 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -2.10 Total: -20.72 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.40 Total: -34.98 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.37 Total: -17.35 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -2.00 Total: 2.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.47 -9.04 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230248148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.150 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds