Wall clock time and date at job start Tue Mar 31 2020 14:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47088 * 2 1 4 4 C 1.52998 * 109.46820 * 120.00358 * 2 1 3 5 5 C 1.53000 * 109.47420 * 66.06929 * 4 2 1 6 6 H 1.08999 * 109.46921 * 302.76029 * 5 4 2 7 7 O 1.42892 * 109.47063 * 62.75838 * 5 4 2 8 8 C 1.53001 * 109.47199 * 182.76399 * 5 4 2 9 9 N 1.46502 * 109.47130 * 179.97438 * 8 5 4 10 10 C 1.34772 * 119.99931 * 179.97438 * 9 8 5 11 11 O 1.21615 * 119.99852 * 0.02562 * 10 9 8 12 12 C 1.47432 * 119.99954 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.21386 * 0.02562 * 12 10 9 14 14 C 1.37807 * 119.94180 * 180.02562 * 13 12 10 15 15 C 1.38662 * 120.37651 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43847 * 359.97438 * 15 14 13 17 17 C 1.39107 * 120.04875 * 359.71895 * 16 15 14 18 18 S 1.76202 * 120.18986 * 180.27768 * 17 16 15 19 19 C 1.76201 * 99.99821 * 352.64524 * 18 17 16 20 20 H 1.07999 * 120.00474 * 4.55001 * 19 18 17 21 21 C 1.38807 * 119.99956 * 184.55855 * 19 18 17 22 22 N 1.31560 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47111 * 59.99545 * 23 21 19 25 25 H 1.48497 * 109.47551 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47345 * 299.99831 * 23 21 19 27 27 H 1.09000 * 109.47178 * 300.00301 * 1 2 3 28 28 H 1.08999 * 109.46770 * 59.99520 * 1 2 3 29 29 H 1.08993 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46708 * 239.99699 * 2 1 3 31 31 H 1.08999 * 109.46818 * 184.93805 * 3 2 1 32 32 H 1.08993 * 109.47259 * 304.94013 * 3 2 1 33 33 H 1.09000 * 109.46980 * 64.94573 * 3 2 1 34 34 H 1.08998 * 109.47089 * 186.07350 * 4 2 1 35 35 H 1.09003 * 109.47000 * 306.06463 * 4 2 1 36 36 H 0.96703 * 114.00231 * 60.00660 * 7 5 4 37 37 H 1.09008 * 109.46831 * 299.99527 * 8 5 4 38 38 H 1.08994 * 109.47172 * 59.99520 * 8 5 4 39 39 H 0.96994 * 119.99647 * 0.02562 * 9 8 5 40 40 H 1.08006 * 120.03059 * 359.97438 * 13 12 10 41 41 H 1.07998 * 119.81359 * 180.02562 * 14 13 12 42 42 H 1.08001 * 119.78107 * 179.97438 * 15 14 13 43 43 H 1.08003 * 119.96987 * 180.02562 * 16 15 14 44 44 H 0.96998 * 119.99963 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6583 -2.2011 1.1752 6 1 0.5773 -2.2927 1.0699 7 8 2.2993 -2.8026 0.0487 8 6 2.1076 -2.9083 2.4555 9 7 1.7416 -4.3251 2.3849 10 6 2.0403 -5.1500 3.4079 11 8 2.6133 -4.7181 4.3899 12 6 1.6715 -6.5757 3.3372 13 6 1.0129 -7.0763 2.2118 14 6 0.6703 -8.4097 2.1518 15 6 0.9752 -9.2601 3.2038 16 6 1.6251 -8.7824 4.3225 17 6 1.9850 -7.4409 4.3993 18 16 2.8220 -6.8282 5.8236 19 6 2.7325 -8.2468 6.8649 20 1 2.3115 -9.1673 6.4885 21 6 3.2029 -8.1811 8.1692 22 7 3.7160 -7.0599 8.6278 23 14 3.1073 -9.6848 9.2734 24 1 3.8854 -10.7946 8.6668 25 1 3.6717 -9.3563 10.6071 26 1 1.6892 -10.0991 9.4240 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1264 1.4437 -0.0885 32 1 1.6063 1.9812 -0.8424 33 1 1.7508 1.9301 0.9310 34 1 3.1245 -0.6282 1.3053 35 1 1.5907 -0.2740 2.1359 36 1 3.2650 -2.7581 0.0754 37 1 3.1887 -2.8168 2.5608 38 1 1.6186 -2.4495 3.3147 39 1 1.2849 -4.6696 1.6015 40 1 0.7716 -6.4187 1.3897 41 1 0.1615 -8.7947 1.2805 42 1 0.7018 -10.3034 3.1468 43 1 1.8593 -9.4515 5.1373 44 1 4.0451 -7.0141 9.5391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230248148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:49 Heat of formation + Delta-G solvation = -103.550738 kcal Electronic energy + Delta-G solvation = -24349.386977 eV Core-core repulsion = 20777.129207 eV Total energy + Delta-G solvation = -3572.257771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05229 -39.50653 -38.75624 -36.25760 -35.25590 -34.76106 -32.42084 -31.78573 -30.77828 -27.99759 -27.84055 -27.16533 -24.47563 -23.44509 -22.78697 -21.65679 -20.79587 -19.96364 -18.84316 -17.56873 -17.41353 -17.18152 -17.04914 -16.56008 -16.03227 -15.85924 -15.45056 -15.44072 -15.26409 -14.82586 -14.68171 -14.58319 -14.23779 -13.94874 -13.50755 -13.29889 -13.15859 -12.97816 -12.95343 -12.89508 -12.60128 -12.55747 -12.22848 -12.05682 -11.93225 -11.51198 -11.49145 -11.39841 -11.36361 -11.33651 -10.83917 -10.42493 -10.14157 -9.90489 -9.75726 -8.46691 -8.44262 -6.24076 0.03828 0.53787 1.26432 1.37921 1.43757 1.64377 2.02408 2.15991 2.27589 2.87682 3.04558 3.24859 3.48171 3.63751 3.87576 3.98587 4.01617 4.05444 4.20408 4.25468 4.27507 4.46311 4.61247 4.61378 4.65480 4.78022 4.84512 4.86599 4.87792 5.00447 5.03915 5.10912 5.12258 5.17778 5.35147 5.36465 5.46110 5.49991 5.51536 5.57551 5.58098 5.67618 6.09928 6.16822 6.63273 6.79887 6.96126 7.36997 8.60588 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.002767 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.597559 B =10117.493815 C =11382.938422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.142 4.142 5 C 0.112 3.888 6 H 0.112 0.888 7 O -0.564 6.564 8 C 0.088 3.912 9 N -0.709 5.709 10 C 0.544 3.456 11 O -0.558 6.558 12 C -0.182 4.182 13 C -0.054 4.054 14 C -0.157 4.157 15 C -0.069 4.069 16 C -0.176 4.176 17 C -0.073 4.073 18 S 0.063 5.937 19 C -0.604 4.604 20 H 0.095 0.905 21 C 0.024 3.976 22 N -0.906 5.906 23 Si 0.993 3.007 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.261 1.261 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.387 0.613 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.413 0.587 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.120 0.880 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 9.098 -20.760 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.180 4.180 5 C 0.052 3.948 6 H 0.130 0.870 7 O -0.371 6.371 8 C -0.036 4.036 9 N -0.363 5.363 10 C 0.332 3.668 11 O -0.438 6.438 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.180 4.180 15 C -0.090 4.090 16 C -0.201 4.201 17 C -0.191 4.191 18 S 0.322 5.678 19 C -0.750 4.750 20 H 0.113 0.887 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.814 3.186 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.186 1.186 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.236 0.764 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.251 0.749 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.137 0.863 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.595 10.583 -19.561 23.198 hybrid contribution 0.156 -1.808 0.974 2.060 sum -6.439 8.775 -18.587 21.540 Atomic orbital electron populations 1.21916 0.95191 1.01845 1.01905 1.20992 0.95963 0.95999 0.97809 1.21846 1.01046 0.95716 1.01911 1.22261 1.02239 0.94124 0.99425 1.22095 0.98538 0.91222 0.82905 0.87034 1.86536 1.25419 1.81341 1.43780 1.22157 1.00638 0.80868 0.99984 1.45525 1.61499 1.09063 1.20198 1.18528 0.78873 0.86559 0.82800 1.90787 1.42931 1.77223 1.32906 1.19503 1.09886 0.92448 0.97703 1.21434 0.94110 0.96833 0.94998 1.21329 1.03641 0.92945 1.00118 1.21546 0.94460 1.01050 0.91957 1.21458 1.03693 0.94158 1.00760 1.22989 0.99392 0.97308 0.99403 1.84899 1.61223 1.17290 1.04426 1.24245 1.48140 1.01434 1.01205 0.88712 1.26155 0.92995 1.00463 0.98568 1.70129 1.38097 1.28038 1.17807 0.85083 0.79382 0.77360 0.76753 1.18459 1.19863 1.18595 0.92732 0.92370 0.92589 0.90742 0.92608 0.92273 0.92820 0.90768 0.90620 0.76371 0.92165 0.91890 0.74886 0.82449 0.81688 0.83198 0.86268 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.97 71.98 0.65 -1.16 16 2 C -0.09 -1.08 2.86 -10.79 -0.03 -1.11 16 3 C -0.15 -1.65 9.19 71.98 0.66 -0.98 16 4 C -0.14 -1.86 4.36 30.59 0.13 -1.73 16 5 C 0.11 1.71 2.91 30.59 0.09 1.80 16 6 H 0.11 1.63 6.48 -2.39 -0.02 1.62 16 7 O -0.56 -8.48 12.43 -148.98 -1.85 -10.33 16 8 C 0.09 2.03 5.34 86.38 0.46 2.49 16 9 N -0.71 -19.20 5.40 -466.35 -2.52 -21.72 16 10 C 0.54 21.46 7.75 86.67 0.67 22.13 16 11 O -0.56 -27.85 13.77 -4.08 -0.06 -27.90 16 12 C -0.18 -7.15 5.89 -19.95 -0.12 -7.26 16 13 C -0.05 -1.50 9.53 22.51 0.21 -1.28 16 14 C -0.16 -3.95 10.02 22.27 0.22 -3.73 16 15 C -0.07 -2.11 10.03 22.29 0.22 -1.88 16 16 C -0.18 -7.37 9.25 22.40 0.21 -7.16 16 17 C -0.07 -3.46 6.14 23.04 0.14 -3.32 16 18 S 0.06 3.68 18.56 -56.49 -1.05 2.64 16 19 C -0.60 -35.63 9.08 67.96 0.62 -35.01 16 20 H 0.10 5.25 4.84 -2.91 -0.01 5.24 16 21 C 0.02 1.37 5.49 84.87 0.47 1.84 16 22 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 23 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.69 6.54 -2.39 -0.02 0.67 16 30 H 0.07 0.98 7.59 -2.39 -0.02 0.96 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.39 4.14 9.05 -74.06 -0.67 3.47 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 8.60 6.38 -92.71 -0.59 8.01 16 40 H 0.16 2.93 6.40 -2.91 -0.02 2.91 16 41 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 43 H 0.12 5.39 4.97 -2.91 -0.01 5.37 16 44 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -78.88 371.03 1.22 -77.66 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.23 Total: 25.49 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 4.61 Total: -36.39 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.23 Total: -77.44 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.91 Total: -38.24 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.05 Total: 2.64 kcal Total: -78.88 1.22 -77.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230248148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.889 kcal (2) G-P(sol) polarization free energy of solvation -78.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds