Wall clock time and date at job start Tue Mar 31 2020 14:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.53000 * 109.46970 * 119.99761 * 2 1 3 5 5 C 1.53001 * 109.46948 * 174.80890 * 4 2 1 6 6 H 1.08998 * 109.47286 * 54.66287 * 5 4 2 7 7 O 1.42901 * 109.46809 * 294.65982 * 5 4 2 8 8 C 1.53001 * 109.47123 * 174.65999 * 5 4 2 9 9 N 1.46498 * 109.46979 * 184.99865 * 8 5 4 10 10 C 1.34779 * 119.99604 * 180.02562 * 9 8 5 11 11 O 1.21612 * 120.00191 * 0.02562 * 10 9 8 12 12 C 1.47429 * 119.99471 * 179.72718 * 10 9 8 13 13 C 1.39675 * 120.21940 * 0.27291 * 12 10 9 14 14 C 1.37805 * 119.93925 * 180.02562 * 13 12 10 15 15 C 1.38653 * 120.38404 * 359.97438 * 14 13 12 16 16 C 1.37914 * 120.43715 * 0.02648 * 15 14 13 17 17 C 1.39106 * 120.04923 * 359.67303 * 16 15 14 18 18 S 1.76210 * 120.19161 * 180.29859 * 17 16 15 19 19 C 1.76202 * 99.99549 * 353.05886 * 18 17 16 20 20 H 1.07990 * 120.00442 * 3.67019 * 19 18 17 21 21 C 1.38807 * 119.99445 * 183.67454 * 19 18 17 22 22 N 1.31555 * 120.00078 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99868 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47484 * 59.99307 * 23 21 19 25 25 H 1.48500 * 109.47382 * 179.97438 * 23 21 19 26 26 H 1.48510 * 109.46988 * 299.99623 * 23 21 19 27 27 H 1.08994 * 109.47172 * 184.86783 * 1 2 3 28 28 H 1.08997 * 109.46981 * 304.86774 * 1 2 3 29 29 H 1.09004 * 109.46798 * 64.86142 * 1 2 3 30 30 H 1.08995 * 109.46830 * 239.99904 * 2 1 3 31 31 H 1.08996 * 109.46905 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46666 * 299.99940 * 3 2 1 33 33 H 1.08997 * 109.47259 * 59.99673 * 3 2 1 34 34 H 1.09002 * 109.46972 * 54.81011 * 4 2 1 35 35 H 1.09003 * 109.47317 * 294.80658 * 4 2 1 36 36 H 0.96695 * 113.99977 * 299.99709 * 7 5 4 37 37 H 1.09003 * 109.46618 * 65.00174 * 8 5 4 38 38 H 1.08995 * 109.47066 * 305.00054 * 8 5 4 39 39 H 0.96994 * 120.00423 * 0.02562 * 9 8 5 40 40 H 1.07996 * 120.03073 * 359.97438 * 13 12 10 41 41 H 1.07999 * 119.81134 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.78608 * 180.02562 * 15 14 13 43 43 H 1.08008 * 119.97566 * 180.02562 * 16 15 14 44 44 H 0.97000 * 119.99836 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5645 -0.8352 1.1857 6 1 3.9972 0.1549 1.0427 7 8 3.9338 -1.6790 0.0932 8 6 4.0859 -1.4356 2.4928 9 7 5.5508 -1.4347 2.4804 10 6 6.2339 -1.9208 3.5357 11 8 5.6343 -2.3607 4.4979 12 6 7.7081 -1.9253 3.5207 13 6 8.4015 -1.4217 2.4177 14 6 9.7795 -1.4293 2.4095 15 6 10.4845 -1.9340 3.4915 16 6 9.8158 -2.4352 4.5887 17 6 8.4251 -2.4307 4.6187 18 16 7.5670 -3.0628 6.0220 19 6 8.9200 -3.7291 6.9332 20 1 9.9294 -3.6031 6.5708 21 6 8.6882 -4.4161 8.1168 22 7 7.4586 -4.5693 8.5585 23 14 10.1225 -5.1219 9.0833 24 1 11.0406 -4.0240 9.4795 25 1 9.6122 -5.8032 10.3001 26 1 10.8553 -6.0994 8.2387 27 1 -0.3633 -1.0239 0.0872 28 1 -0.3633 0.5875 0.8432 29 1 -0.3633 0.4366 -0.9304 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6028 -1.7185 1.2970 35 1 1.7546 -0.1564 2.1368 36 1 3.5828 -2.5779 0.1543 37 1 3.7241 -2.4590 2.5923 38 1 3.7293 -0.8408 3.3336 39 1 6.0292 -1.0842 1.7129 40 1 7.8581 -1.0276 1.5717 41 1 10.3135 -1.0397 1.5554 42 1 11.5644 -1.9348 3.4750 43 1 10.3724 -2.8262 5.4276 44 1 7.2966 -5.0497 9.3855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230248153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:53 Heat of formation + Delta-G solvation = -80.412807 kcal Electronic energy + Delta-G solvation = -24345.034086 eV Core-core repulsion = 20773.779652 eV Total energy + Delta-G solvation = -3571.254435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.65513 -38.55620 -37.33478 -35.56099 -34.04839 -32.74158 -31.08057 -30.26080 -29.77690 -27.48171 -26.21035 -25.81515 -23.12075 -22.14017 -21.72773 -20.47506 -19.88058 -18.26757 -17.27501 -16.61611 -16.37470 -15.85118 -15.38845 -15.21668 -14.97836 -14.58295 -14.28422 -14.13575 -14.00443 -13.72992 -13.64480 -13.05773 -12.97655 -12.74277 -12.55130 -12.37047 -12.04531 -11.77237 -11.60751 -11.56584 -11.32779 -11.20098 -11.17533 -10.94345 -10.93708 -10.72994 -10.32878 -10.18161 -9.79487 -9.58148 -9.53027 -8.77932 -8.71245 -8.31359 -8.05579 -6.52418 -6.44614 -4.15445 1.54930 2.03525 3.11264 3.14697 3.18654 3.40324 3.47647 3.53653 4.07237 4.19056 4.40335 4.51014 4.55543 4.62401 4.88882 4.93886 4.96106 5.10540 5.14476 5.32682 5.33977 5.39801 5.41996 5.44826 5.57032 5.60426 5.61321 5.66035 5.74488 5.85398 5.88349 5.99262 6.07538 6.12432 6.13151 6.40271 6.60645 6.75204 6.87102 7.03816 7.14435 7.40964 7.46274 7.60862 7.93253 8.17271 8.80761 9.01258 10.58490 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002767 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.293282 B =10117.016427 C =11369.675516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.145 4.145 5 C 0.094 3.906 6 H 0.106 0.894 7 O -0.558 6.558 8 C 0.091 3.909 9 N -0.733 5.733 10 C 0.551 3.449 11 O -0.511 6.511 12 C -0.177 4.177 13 C -0.060 4.060 14 C -0.187 4.187 15 C -0.077 4.077 16 C -0.154 4.154 17 C -0.056 4.056 18 S 0.183 5.817 19 C -0.597 4.597 20 H 0.091 0.909 21 C 0.083 3.917 22 N -0.859 5.859 23 Si 0.919 3.081 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.270 1.270 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.376 0.624 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.398 0.602 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 8.735 -16.703 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.183 4.183 5 C 0.034 3.966 6 H 0.124 0.876 7 O -0.364 6.364 8 C -0.033 4.033 9 N -0.388 5.388 10 C 0.340 3.660 11 O -0.388 6.388 12 C -0.192 4.192 13 C -0.080 4.080 14 C -0.211 4.211 15 C -0.099 4.099 16 C -0.179 4.179 17 C -0.176 4.176 18 S 0.447 5.553 19 C -0.743 4.743 20 H 0.108 0.892 21 C -0.127 4.127 22 N -0.492 5.492 23 Si 0.744 3.256 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.195 1.195 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.224 0.776 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.622 8.702 -15.363 20.108 hybrid contribution 2.181 -0.723 0.106 2.300 sum -7.441 7.979 -15.257 18.757 Atomic orbital electron populations 1.21856 0.95332 1.01707 1.01661 1.21040 0.95372 0.96350 0.98430 1.21910 1.01308 0.95923 1.01653 1.22295 0.95230 1.01729 0.99096 1.22268 0.94058 0.94853 0.85375 0.87608 1.86565 1.77630 1.26306 1.45889 1.21966 0.81495 1.01874 0.98004 1.45726 1.06026 1.66233 1.20862 1.18336 0.87503 0.77869 0.82268 1.90785 1.69758 1.45158 1.33135 1.19111 0.91501 1.11941 0.96658 1.20914 0.94468 0.96846 0.95801 1.20639 0.93797 1.07181 0.99512 1.21086 0.98963 0.96398 0.93426 1.21433 0.93464 1.03253 0.99779 1.23073 0.97106 0.97752 0.99686 1.84734 1.07660 1.56794 1.06096 1.24030 0.96998 1.41697 1.11594 0.89164 1.25089 0.96818 0.94442 0.96394 1.69968 1.19576 1.38032 1.21584 0.86205 0.81173 0.79349 0.78857 1.19494 1.20563 1.19483 0.92729 0.92739 0.92797 0.90458 0.92354 0.92817 0.92726 0.91165 0.90574 0.77625 0.91417 0.90864 0.76658 0.87094 0.87054 0.87011 0.84388 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.09 -0.66 2.87 -90.61 -0.26 -0.92 16 3 C -0.15 -1.04 8.96 37.16 0.33 -0.71 16 4 C -0.15 -1.07 4.36 -26.73 -0.12 -1.18 16 5 C 0.09 0.81 2.87 -26.73 -0.08 0.74 16 6 H 0.11 0.92 6.34 -51.93 -0.33 0.59 16 7 O -0.56 -5.06 12.75 -35.23 -0.45 -5.51 16 8 C 0.09 1.09 5.31 -4.04 -0.02 1.06 16 9 N -0.73 -10.50 5.45 -61.38 -0.33 -10.83 16 10 C 0.55 10.77 7.75 -12.52 -0.10 10.68 16 11 O -0.51 -12.01 13.77 5.27 0.07 -11.93 16 12 C -0.18 -3.55 5.89 -104.75 -0.62 -4.16 16 13 C -0.06 -0.97 9.53 -39.20 -0.37 -1.35 16 14 C -0.19 -2.92 10.02 -39.59 -0.40 -3.32 16 15 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 16 C -0.15 -3.25 9.25 -39.38 -0.36 -3.61 16 17 C -0.06 -1.30 6.14 -38.39 -0.24 -1.54 16 18 S 0.18 4.94 18.56 -107.50 -2.00 2.95 16 19 C -0.60 -16.56 9.08 30.94 0.28 -16.27 16 20 H 0.09 2.37 4.84 -52.49 -0.25 2.11 16 21 C 0.08 2.30 5.49 -17.46 -0.10 2.21 16 22 N -0.86 -24.89 13.22 55.49 0.73 -24.16 16 23 Si 0.92 20.76 29.55 -169.99 -5.02 15.74 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.60 7.70 -51.93 -0.40 0.20 16 31 H 0.06 0.42 6.46 -51.93 -0.34 0.09 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.38 2.50 9.04 45.56 0.41 2.92 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.40 4.83 6.50 -40.82 -0.27 4.57 16 40 H 0.11 1.40 6.40 -52.49 -0.34 1.06 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.14 3.02 4.96 -52.48 -0.26 2.76 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -32.54 371.34 -9.05 -41.59 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.55 Total: 7.27 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -2.10 Total: -20.71 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.40 Total: -34.99 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.38 Total: -17.45 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.54 -9.05 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230248153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.824 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds