Wall clock time and date at job start Tue Mar 31 2020 14:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.53000 * 109.46970 * 119.99761 * 2 1 3 5 5 C 1.53001 * 109.46948 * 174.80890 * 4 2 1 6 6 H 1.08998 * 109.47286 * 54.66287 * 5 4 2 7 7 O 1.42901 * 109.46809 * 294.65982 * 5 4 2 8 8 C 1.53001 * 109.47123 * 174.65999 * 5 4 2 9 9 N 1.46498 * 109.46979 * 184.99865 * 8 5 4 10 10 C 1.34779 * 119.99604 * 180.02562 * 9 8 5 11 11 O 1.21612 * 120.00191 * 0.02562 * 10 9 8 12 12 C 1.47429 * 119.99471 * 179.72718 * 10 9 8 13 13 C 1.39675 * 120.21940 * 0.27291 * 12 10 9 14 14 C 1.37805 * 119.93925 * 180.02562 * 13 12 10 15 15 C 1.38653 * 120.38404 * 359.97438 * 14 13 12 16 16 C 1.37914 * 120.43715 * 0.02648 * 15 14 13 17 17 C 1.39106 * 120.04923 * 359.67303 * 16 15 14 18 18 S 1.76210 * 120.19161 * 180.29859 * 17 16 15 19 19 C 1.76202 * 99.99549 * 353.05886 * 18 17 16 20 20 H 1.07990 * 120.00442 * 3.67019 * 19 18 17 21 21 C 1.38807 * 119.99445 * 183.67454 * 19 18 17 22 22 N 1.31555 * 120.00078 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99868 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47484 * 59.99307 * 23 21 19 25 25 H 1.48500 * 109.47382 * 179.97438 * 23 21 19 26 26 H 1.48510 * 109.46988 * 299.99623 * 23 21 19 27 27 H 1.08994 * 109.47172 * 184.86783 * 1 2 3 28 28 H 1.08997 * 109.46981 * 304.86774 * 1 2 3 29 29 H 1.09004 * 109.46798 * 64.86142 * 1 2 3 30 30 H 1.08995 * 109.46830 * 239.99904 * 2 1 3 31 31 H 1.08996 * 109.46905 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46666 * 299.99940 * 3 2 1 33 33 H 1.08997 * 109.47259 * 59.99673 * 3 2 1 34 34 H 1.09002 * 109.46972 * 54.81011 * 4 2 1 35 35 H 1.09003 * 109.47317 * 294.80658 * 4 2 1 36 36 H 0.96695 * 113.99977 * 299.99709 * 7 5 4 37 37 H 1.09003 * 109.46618 * 65.00174 * 8 5 4 38 38 H 1.08995 * 109.47066 * 305.00054 * 8 5 4 39 39 H 0.96994 * 120.00423 * 0.02562 * 9 8 5 40 40 H 1.07996 * 120.03073 * 359.97438 * 13 12 10 41 41 H 1.07999 * 119.81134 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.78608 * 180.02562 * 15 14 13 43 43 H 1.08008 * 119.97566 * 180.02562 * 16 15 14 44 44 H 0.97000 * 119.99836 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5645 -0.8352 1.1857 6 1 3.9972 0.1549 1.0427 7 8 3.9338 -1.6790 0.0932 8 6 4.0859 -1.4356 2.4928 9 7 5.5508 -1.4347 2.4804 10 6 6.2339 -1.9208 3.5357 11 8 5.6343 -2.3607 4.4979 12 6 7.7081 -1.9253 3.5207 13 6 8.4015 -1.4217 2.4177 14 6 9.7795 -1.4293 2.4095 15 6 10.4845 -1.9340 3.4915 16 6 9.8158 -2.4352 4.5887 17 6 8.4251 -2.4307 4.6187 18 16 7.5670 -3.0628 6.0220 19 6 8.9200 -3.7291 6.9332 20 1 9.9294 -3.6031 6.5708 21 6 8.6882 -4.4161 8.1168 22 7 7.4586 -4.5693 8.5585 23 14 10.1225 -5.1219 9.0833 24 1 11.0406 -4.0240 9.4795 25 1 9.6122 -5.8032 10.3001 26 1 10.8553 -6.0994 8.2387 27 1 -0.3633 -1.0239 0.0872 28 1 -0.3633 0.5875 0.8432 29 1 -0.3633 0.4366 -0.9304 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6028 -1.7185 1.2970 35 1 1.7546 -0.1564 2.1368 36 1 3.5828 -2.5779 0.1543 37 1 3.7241 -2.4590 2.5923 38 1 3.7293 -0.8408 3.3336 39 1 6.0292 -1.0842 1.7129 40 1 7.8581 -1.0276 1.5717 41 1 10.3135 -1.0397 1.5554 42 1 11.5644 -1.9348 3.4750 43 1 10.3724 -2.8262 5.4276 44 1 7.2966 -5.0497 9.3855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230248153.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:52 Heat of formation + Delta-G solvation = -103.448141 kcal Electronic energy + Delta-G solvation = -24346.032973 eV Core-core repulsion = 20773.779652 eV Total energy + Delta-G solvation = -3572.253322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05243 -39.50456 -38.75825 -36.26039 -35.28604 -34.76233 -32.41921 -31.78687 -30.76046 -28.00434 -27.84149 -27.16861 -24.47472 -23.44660 -22.80485 -21.66207 -20.80001 -19.96366 -18.84287 -17.56240 -17.41854 -17.17638 -17.04757 -16.55858 -16.04555 -15.86072 -15.47167 -15.43140 -15.26072 -14.82512 -14.68016 -14.59510 -14.23894 -13.96018 -13.50281 -13.30264 -13.13251 -12.97898 -12.95532 -12.89582 -12.60823 -12.55822 -12.24317 -12.05660 -11.92315 -11.52069 -11.49904 -11.39201 -11.37180 -11.33606 -10.83658 -10.42351 -10.14441 -9.90569 -9.75920 -8.46852 -8.44450 -6.24056 0.03725 0.53745 1.26418 1.37939 1.43732 1.64286 2.02200 2.16069 2.27724 2.87632 3.04538 3.24741 3.46849 3.63843 3.87633 3.98453 4.01473 4.04863 4.19723 4.25207 4.27376 4.47102 4.61063 4.61302 4.64723 4.77669 4.84482 4.86439 4.87668 4.99459 5.04261 5.10818 5.12111 5.17717 5.35116 5.36383 5.46020 5.49436 5.51744 5.57169 5.57965 5.67593 6.09894 6.16797 6.62729 6.79851 6.96113 7.36627 8.60562 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002767 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.293282 B =10117.016427 C =11369.675516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.142 4.142 5 C 0.111 3.889 6 H 0.113 0.887 7 O -0.565 6.565 8 C 0.088 3.912 9 N -0.709 5.709 10 C 0.544 3.456 11 O -0.558 6.558 12 C -0.182 4.182 13 C -0.054 4.054 14 C -0.158 4.158 15 C -0.069 4.069 16 C -0.176 4.176 17 C -0.073 4.073 18 S 0.063 5.937 19 C -0.604 4.604 20 H 0.095 0.905 21 C 0.024 3.976 22 N -0.906 5.906 23 Si 0.993 3.007 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.261 1.261 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.387 0.613 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.412 0.588 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.120 0.880 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 10.320 -20.484 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.209 4.209 4 C -0.180 4.180 5 C 0.052 3.948 6 H 0.131 0.869 7 O -0.372 6.372 8 C -0.036 4.036 9 N -0.363 5.363 10 C 0.332 3.668 11 O -0.438 6.438 12 C -0.196 4.196 13 C -0.074 4.074 14 C -0.180 4.180 15 C -0.090 4.090 16 C -0.201 4.201 17 C -0.191 4.191 18 S 0.322 5.678 19 C -0.750 4.750 20 H 0.113 0.887 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.814 3.186 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.186 1.186 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.236 0.764 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.251 0.749 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.137 0.863 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.780 10.344 -19.280 23.222 hybrid contribution 1.647 -1.018 0.860 2.118 sum -6.134 9.327 -18.420 21.539 Atomic orbital electron populations 1.21849 0.94862 1.01866 1.01938 1.20997 0.95738 0.96287 0.97769 1.21922 1.01171 0.95846 1.01949 1.22268 0.94142 1.02179 0.99455 1.22120 0.94757 0.94638 0.83326 0.86902 1.86540 1.77896 1.27202 1.45570 1.22170 0.79856 1.01674 0.99909 1.45545 1.07065 1.64113 1.19606 1.18528 0.87763 0.77725 0.82736 1.90785 1.70506 1.47332 1.35208 1.19507 0.92158 1.10997 0.96898 1.21434 0.95288 0.95251 0.95405 1.21327 0.93573 1.03333 0.99804 1.21545 1.01045 0.94340 0.92077 1.21461 0.92739 1.04760 1.01124 1.22989 0.97939 0.99257 0.98905 1.84903 1.10350 1.61796 1.10764 1.24246 0.96933 1.41889 1.11974 0.88701 1.26153 0.99722 0.94854 0.97450 1.70127 1.21945 1.39730 1.22275 0.85085 0.77458 0.78737 0.77305 1.18463 1.19860 1.18590 0.92614 0.92768 0.92293 0.90830 0.92530 0.92346 0.92686 0.90727 0.90614 0.76371 0.92254 0.91760 0.74937 0.82437 0.81682 0.83196 0.86259 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.19 71.98 0.66 -0.98 16 2 C -0.09 -1.08 2.87 -10.79 -0.03 -1.11 16 3 C -0.15 -1.79 8.96 71.98 0.64 -1.15 16 4 C -0.14 -1.86 4.36 30.59 0.13 -1.73 16 5 C 0.11 1.70 2.87 30.59 0.09 1.79 16 6 H 0.11 1.63 6.34 -2.39 -0.02 1.62 16 7 O -0.56 -8.73 12.75 -148.98 -1.90 -10.63 16 8 C 0.09 2.04 5.31 86.38 0.46 2.49 16 9 N -0.71 -19.23 5.45 -466.37 -2.54 -21.77 16 10 C 0.54 21.46 7.75 86.66 0.67 22.13 16 11 O -0.56 -27.84 13.77 -4.07 -0.06 -27.89 16 12 C -0.18 -7.15 5.89 -19.95 -0.12 -7.27 16 13 C -0.05 -1.50 9.53 22.51 0.21 -1.28 16 14 C -0.16 -3.95 10.02 22.27 0.22 -3.73 16 15 C -0.07 -2.11 10.03 22.29 0.22 -1.88 16 16 C -0.18 -7.38 9.25 22.40 0.21 -7.17 16 17 C -0.07 -3.46 6.14 23.04 0.14 -3.32 16 18 S 0.06 3.70 18.56 -56.49 -1.05 2.65 16 19 C -0.60 -35.64 9.08 67.96 0.62 -35.02 16 20 H 0.10 5.26 4.84 -2.92 -0.01 5.24 16 21 C 0.02 1.38 5.49 84.87 0.47 1.84 16 22 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 23 Si 0.99 44.24 29.55 68.60 2.03 46.26 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.97 7.70 -2.39 -0.02 0.95 16 31 H 0.06 0.68 6.46 -2.39 -0.02 0.67 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.39 4.28 9.04 -74.06 -0.67 3.61 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.41 8.55 6.50 -92.71 -0.60 7.95 16 40 H 0.16 2.92 6.40 -2.91 -0.02 2.90 16 41 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 43 H 0.12 5.39 4.96 -2.91 -0.01 5.38 16 44 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -79.04 371.34 1.13 -77.91 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.24 Total: 25.57 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 4.60 Total: -36.39 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.26 Total: -77.48 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.96 Total: -38.52 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.05 Total: 2.65 kcal Total: -79.04 1.13 -77.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230248153.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.539 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds