Wall clock time and date at job start Tue Mar 31 2020 14:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47008 * 2 1 4 4 C 1.53004 * 109.47040 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46803 * 305.00019 * 4 3 2 6 6 O 1.42902 * 109.47378 * 64.99627 * 4 3 2 7 7 C 1.52992 * 109.47205 * 185.00194 * 4 3 2 8 8 N 1.46497 * 109.47339 * 179.97438 * 7 4 3 9 9 C 1.34780 * 120.00366 * 179.97438 * 8 7 4 10 10 O 1.21604 * 119.99709 * 0.02562 * 9 8 7 11 11 C 1.47429 * 119.99956 * 180.02562 * 9 8 7 12 12 C 1.39672 * 120.21756 * 0.25452 * 11 9 8 13 13 C 1.37810 * 119.93747 * 180.27711 * 12 11 9 14 14 C 1.38652 * 120.38325 * 359.72378 * 13 12 11 15 15 C 1.37911 * 120.43793 * 0.02562 * 14 13 12 16 16 C 1.39120 * 120.05120 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18970 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00220 * 353.15297 * 17 16 15 19 19 H 1.08001 * 119.99783 * 354.35202 * 18 17 16 20 20 C 1.38812 * 120.00190 * 174.34598 * 18 17 16 21 21 N 1.31553 * 119.99601 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47337 * 119.99683 * 22 20 18 25 25 H 1.48503 * 109.46956 * 240.00297 * 22 20 18 26 26 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46671 * 299.99727 * 1 2 3 28 28 H 1.09002 * 109.47246 * 59.99690 * 1 2 3 29 29 H 1.08997 * 109.46853 * 239.99955 * 2 1 3 30 30 H 1.08997 * 109.47047 * 119.99868 * 2 1 3 31 31 H 1.08997 * 109.47350 * 60.00259 * 3 2 1 32 32 H 1.08997 * 109.47108 * 299.99831 * 3 2 1 33 33 H 1.09006 * 109.47229 * 299.99956 * 5 4 3 34 34 H 1.08997 * 109.47696 * 59.99856 * 5 4 3 35 35 H 1.09001 * 109.47173 * 180.02562 * 5 4 3 36 36 H 0.96695 * 113.99481 * 60.00057 * 6 4 3 37 37 H 1.08998 * 109.47338 * 59.99498 * 7 4 3 38 38 H 1.09003 * 109.47438 * 299.99752 * 7 4 3 39 39 H 0.97001 * 120.00026 * 0.02562 * 8 7 4 40 40 H 1.08008 * 120.03189 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.80841 * 179.74372 * 13 12 11 42 42 H 1.07997 * 119.78260 * 180.02562 * 14 13 12 43 43 H 1.07999 * 119.98204 * 180.02562 * 15 14 13 44 44 H 0.97004 * 119.99870 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0805 0.6150 1.1807 6 8 4.0459 0.8733 -1.2219 7 6 4.0801 2.8794 0.1251 8 7 5.5451 2.8794 0.1251 9 6 6.2191 4.0422 0.2264 10 8 5.6111 5.0913 0.3182 11 6 7.6933 4.0422 0.2258 12 6 8.3962 2.8402 0.1152 13 6 9.7743 2.8463 0.1210 14 6 10.4698 4.0408 0.2304 15 6 9.7917 5.2371 0.3353 16 6 8.4006 5.2520 0.3313 17 16 7.5305 6.7782 0.4657 18 6 8.8766 7.8715 0.7773 19 1 9.8715 7.4761 0.9202 20 6 8.6586 9.2410 0.8390 21 7 7.4468 9.7225 0.6653 22 14 10.0859 10.4001 1.1686 23 1 11.3356 9.6138 1.3273 24 1 10.2335 11.3403 0.0286 25 1 9.8232 11.1676 2.4125 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7175 1.0491 2.1123 34 1 3.7171 -0.4088 1.0912 35 1 5.1705 0.6153 1.1805 36 1 3.7603 1.3478 -2.0145 37 1 3.7171 3.3136 1.0567 38 1 3.7165 3.4691 -0.7165 39 1 6.0301 2.0426 0.0515 40 1 7.8602 1.9064 0.0301 41 1 10.3156 1.9154 0.0396 42 1 11.5497 4.0343 0.2336 43 1 10.3409 6.1632 0.4197 44 1 7.2944 10.6796 0.7080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231687513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:21 Heat of formation + Delta-G solvation = -76.192698 kcal Electronic energy + Delta-G solvation = -24665.876620 eV Core-core repulsion = 21094.805183 eV Total energy + Delta-G solvation = -3571.071437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83644 -38.69399 -37.30234 -34.51623 -34.10382 -32.74514 -31.44862 -30.30379 -30.24224 -27.29376 -26.33704 -25.81613 -23.14873 -22.01954 -21.61741 -20.50331 -19.98083 -18.29855 -17.31396 -16.69222 -15.90208 -15.88765 -15.29940 -15.18593 -15.05677 -14.74752 -14.21403 -14.10231 -13.84953 -13.70587 -13.54128 -12.97547 -12.75923 -12.72664 -12.58384 -12.25958 -12.05339 -11.96066 -11.76104 -11.58289 -11.48306 -11.21273 -11.19680 -10.91107 -10.90631 -10.71638 -10.32617 -10.11478 -9.78498 -9.62142 -9.48724 -8.76282 -8.71024 -8.30926 -8.04876 -6.52123 -6.45568 -4.15730 1.55424 2.03847 3.11095 3.12358 3.20725 3.41384 3.48041 3.54435 4.05307 4.09428 4.40815 4.50947 4.57181 4.61707 4.86068 4.95294 4.95619 5.14467 5.18334 5.32648 5.35612 5.41782 5.47678 5.53165 5.58182 5.61970 5.70235 5.74768 5.78200 5.80733 5.87339 6.00175 6.05938 6.10724 6.14026 6.40679 6.61527 6.76673 6.87737 7.04896 7.15096 7.44258 7.45980 7.60815 7.94789 8.17440 8.81771 9.00896 10.57789 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.002950 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.029529 B = 9489.432004 C =10773.593959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.143 4.143 4 C 0.121 3.879 5 C -0.142 4.142 6 O -0.556 6.556 7 C 0.098 3.902 8 N -0.731 5.731 9 C 0.551 3.449 10 O -0.512 6.512 11 C -0.177 4.177 12 C -0.060 4.060 13 C -0.187 4.187 14 C -0.077 4.077 15 C -0.154 4.154 16 C -0.056 4.056 17 S 0.182 5.818 18 C -0.595 4.595 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.858 5.858 22 Si 0.919 3.081 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.378 0.622 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.398 0.602 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -18.675 -1.455 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.181 4.181 4 C 0.080 3.920 5 C -0.199 4.199 6 O -0.362 6.362 7 C -0.026 4.026 8 N -0.387 5.387 9 C 0.340 3.660 10 O -0.389 6.389 11 C -0.192 4.192 12 C -0.081 4.081 13 C -0.211 4.211 14 C -0.099 4.099 15 C -0.179 4.179 16 C -0.176 4.176 17 S 0.446 5.554 18 C -0.741 4.741 19 H 0.109 0.891 20 C -0.128 4.128 21 N -0.491 5.491 22 Si 0.745 3.255 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.225 0.775 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.115 -17.486 -1.025 19.746 hybrid contribution 2.210 0.448 -0.159 2.260 sum -6.905 -17.038 -1.184 18.422 Atomic orbital electron populations 1.21797 0.96039 1.01511 1.01777 1.21517 0.95379 0.96274 1.02712 1.22222 0.94582 0.98041 1.03262 1.21472 0.92765 0.91690 0.86100 1.21819 1.02021 1.00273 0.95800 1.86524 1.77183 1.57105 1.15368 1.21906 0.81623 0.96153 1.02952 1.45735 1.05993 1.09405 1.77546 1.18334 0.87547 0.83301 0.76814 1.90780 1.69261 1.30412 1.48444 1.19107 0.91519 0.93123 1.15428 1.20910 0.94414 0.95606 0.97127 1.20639 0.93829 0.97482 1.09168 1.21084 0.98960 0.92628 0.97226 1.21438 0.93387 0.98863 1.04189 1.23090 0.97172 1.00487 0.96878 1.84752 1.07303 0.89419 1.73891 1.24098 0.98762 0.94829 1.56435 0.89107 1.25103 0.96792 0.97585 0.93333 1.69988 1.20402 1.14483 1.44237 0.86098 0.81217 0.79918 0.78294 1.19153 1.20239 1.20245 0.92847 0.92790 0.92840 0.91394 0.91618 0.90671 0.91318 0.90900 0.91323 0.91812 0.77472 0.90858 0.91503 0.76540 0.87164 0.87068 0.87023 0.84376 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.86 5.34 -26.73 -0.14 -1.00 16 3 C -0.14 -1.09 4.48 -26.73 -0.12 -1.21 16 4 C 0.12 1.09 0.74 -90.62 -0.07 1.02 16 5 C -0.14 -1.24 8.18 37.16 0.30 -0.93 16 6 O -0.56 -5.14 12.26 -35.23 -0.43 -5.57 16 7 C 0.10 1.20 4.78 -4.05 -0.02 1.18 16 8 N -0.73 -10.52 5.10 -61.39 -0.31 -10.83 16 9 C 0.55 10.77 7.75 -12.52 -0.10 10.67 16 10 O -0.51 -12.01 13.77 5.27 0.07 -11.93 16 11 C -0.18 -3.54 5.89 -104.75 -0.62 -4.16 16 12 C -0.06 -0.98 9.53 -39.20 -0.37 -1.36 16 13 C -0.19 -2.93 10.02 -39.58 -0.40 -3.33 16 14 C -0.08 -1.33 10.03 -39.55 -0.40 -1.73 16 15 C -0.15 -3.25 9.22 -39.37 -0.36 -3.61 16 16 C -0.06 -1.30 6.15 -38.39 -0.24 -1.54 16 17 S 0.18 4.92 18.56 -107.50 -2.00 2.92 16 18 C -0.59 -16.49 9.00 30.94 0.28 -16.21 16 19 H 0.09 2.39 4.98 -52.49 -0.26 2.13 16 20 C 0.08 2.28 5.49 -17.46 -0.10 2.18 16 21 N -0.86 -24.83 13.22 55.49 0.73 -24.10 16 22 Si 0.92 20.77 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.52 7.82 -51.93 -0.41 0.11 16 30 H 0.07 0.46 6.35 -51.93 -0.33 0.13 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.54 6.35 -51.93 -0.33 0.21 16 35 H 0.06 0.59 6.86 -51.93 -0.36 0.23 16 36 H 0.38 2.59 9.04 45.56 0.41 3.00 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 4.95 5.22 -40.82 -0.21 4.74 16 40 H 0.11 1.41 6.40 -52.48 -0.34 1.07 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.14 3.04 5.04 -52.49 -0.26 2.78 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -32.39 367.92 -8.83 -41.22 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.45 Total: 7.64 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.97 Total: -20.64 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.42 Total: -34.93 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.36 Total: -17.51 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.00 Total: 2.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.39 -8.83 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231687513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.970 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds