Wall clock time and date at job start Tue Mar 31 2020 14:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47008 * 2 1 4 4 C 1.53004 * 109.47040 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46803 * 305.00019 * 4 3 2 6 6 O 1.42902 * 109.47378 * 64.99627 * 4 3 2 7 7 C 1.52992 * 109.47205 * 185.00194 * 4 3 2 8 8 N 1.46497 * 109.47339 * 179.97438 * 7 4 3 9 9 C 1.34780 * 120.00366 * 179.97438 * 8 7 4 10 10 O 1.21604 * 119.99709 * 0.02562 * 9 8 7 11 11 C 1.47429 * 119.99956 * 180.02562 * 9 8 7 12 12 C 1.39672 * 120.21756 * 0.25452 * 11 9 8 13 13 C 1.37810 * 119.93747 * 180.27711 * 12 11 9 14 14 C 1.38652 * 120.38325 * 359.72378 * 13 12 11 15 15 C 1.37911 * 120.43793 * 0.02562 * 14 13 12 16 16 C 1.39120 * 120.05120 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18970 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00220 * 353.15297 * 17 16 15 19 19 H 1.08001 * 119.99783 * 354.35202 * 18 17 16 20 20 C 1.38812 * 120.00190 * 174.34598 * 18 17 16 21 21 N 1.31553 * 119.99601 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47337 * 119.99683 * 22 20 18 25 25 H 1.48503 * 109.46956 * 240.00297 * 22 20 18 26 26 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46671 * 299.99727 * 1 2 3 28 28 H 1.09002 * 109.47246 * 59.99690 * 1 2 3 29 29 H 1.08997 * 109.46853 * 239.99955 * 2 1 3 30 30 H 1.08997 * 109.47047 * 119.99868 * 2 1 3 31 31 H 1.08997 * 109.47350 * 60.00259 * 3 2 1 32 32 H 1.08997 * 109.47108 * 299.99831 * 3 2 1 33 33 H 1.09006 * 109.47229 * 299.99956 * 5 4 3 34 34 H 1.08997 * 109.47696 * 59.99856 * 5 4 3 35 35 H 1.09001 * 109.47173 * 180.02562 * 5 4 3 36 36 H 0.96695 * 113.99481 * 60.00057 * 6 4 3 37 37 H 1.08998 * 109.47338 * 59.99498 * 7 4 3 38 38 H 1.09003 * 109.47438 * 299.99752 * 7 4 3 39 39 H 0.97001 * 120.00026 * 0.02562 * 8 7 4 40 40 H 1.08008 * 120.03189 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.80841 * 179.74372 * 13 12 11 42 42 H 1.07997 * 119.78260 * 180.02562 * 14 13 12 43 43 H 1.07999 * 119.98204 * 180.02562 * 15 14 13 44 44 H 0.97004 * 119.99870 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0805 0.6150 1.1807 6 8 4.0459 0.8733 -1.2219 7 6 4.0801 2.8794 0.1251 8 7 5.5451 2.8794 0.1251 9 6 6.2191 4.0422 0.2264 10 8 5.6111 5.0913 0.3182 11 6 7.6933 4.0422 0.2258 12 6 8.3962 2.8402 0.1152 13 6 9.7743 2.8463 0.1210 14 6 10.4698 4.0408 0.2304 15 6 9.7917 5.2371 0.3353 16 6 8.4006 5.2520 0.3313 17 16 7.5305 6.7782 0.4657 18 6 8.8766 7.8715 0.7773 19 1 9.8715 7.4761 0.9202 20 6 8.6586 9.2410 0.8390 21 7 7.4468 9.7225 0.6653 22 14 10.0859 10.4001 1.1686 23 1 11.3356 9.6138 1.3273 24 1 10.2335 11.3403 0.0286 25 1 9.8232 11.1676 2.4125 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7175 1.0491 2.1123 34 1 3.7171 -0.4088 1.0912 35 1 5.1705 0.6153 1.1805 36 1 3.7603 1.3478 -2.0145 37 1 3.7171 3.3136 1.0567 38 1 3.7165 3.4691 -0.7165 39 1 6.0301 2.0426 0.0515 40 1 7.8602 1.9064 0.0301 41 1 10.3156 1.9154 0.0396 42 1 11.5497 4.0343 0.2336 43 1 10.3409 6.1632 0.4197 44 1 7.2944 10.6796 0.7080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231687513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:20 Heat of formation + Delta-G solvation = -98.855925 kcal Electronic energy + Delta-G solvation = -24666.859371 eV Core-core repulsion = 21094.805183 eV Total energy + Delta-G solvation = -3572.054188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15005 -39.75359 -38.77211 -35.46570 -35.06259 -34.76615 -32.58578 -31.78871 -31.44851 -28.07060 -27.84299 -27.25859 -24.51107 -23.42116 -22.50052 -21.60405 -21.11410 -19.97603 -18.88446 -17.65432 -17.43145 -17.07026 -16.72915 -16.54519 -16.05271 -15.96891 -15.48005 -15.37089 -15.18708 -15.11186 -14.68911 -14.37270 -14.05557 -13.84179 -13.35637 -13.32067 -13.25420 -13.00979 -12.89365 -12.87330 -12.65573 -12.59672 -12.53035 -12.11767 -12.04834 -11.55154 -11.50525 -11.43307 -11.34708 -11.31681 -10.80450 -10.42041 -10.13531 -9.91150 -9.75906 -8.46697 -8.45506 -6.24374 0.03532 0.53360 1.26653 1.35053 1.45455 1.64815 2.02310 2.15538 2.27288 2.87286 3.04052 3.24656 3.33829 3.59591 3.83326 3.90872 3.97177 4.01683 4.23414 4.26802 4.34334 4.57193 4.59557 4.61422 4.65331 4.72447 4.84204 4.86667 4.89290 4.99527 5.02485 5.09331 5.11098 5.21022 5.31521 5.36367 5.45158 5.46163 5.49934 5.52673 5.57328 5.67174 6.09872 6.16262 6.62315 6.81021 6.95738 7.36516 8.60265 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.002950 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.029529 B = 9489.432004 C =10773.593959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.141 4.141 4 C 0.135 3.865 5 C -0.145 4.145 6 O -0.561 6.561 7 C 0.095 3.905 8 N -0.706 5.706 9 C 0.544 3.456 10 O -0.558 6.558 11 C -0.181 4.181 12 C -0.054 4.054 13 C -0.157 4.157 14 C -0.069 4.069 15 C -0.175 4.175 16 C -0.073 4.073 17 S 0.064 5.936 18 C -0.601 4.601 19 H 0.094 0.906 20 C 0.023 3.977 21 N -0.905 5.905 22 Si 0.994 3.006 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.271 1.271 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.388 0.612 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.412 0.588 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.119 0.881 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 -22.806 -1.653 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.179 4.179 4 C 0.093 3.907 5 C -0.202 4.202 6 O -0.369 6.369 7 C -0.030 4.030 8 N -0.361 5.361 9 C 0.333 3.667 10 O -0.438 6.438 11 C -0.195 4.195 12 C -0.074 4.074 13 C -0.180 4.180 14 C -0.090 4.090 15 C -0.200 4.200 16 C -0.191 4.191 17 S 0.322 5.678 18 C -0.748 4.748 19 H 0.112 0.888 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.815 3.185 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.196 1.196 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.237 0.763 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.137 0.863 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.270 -21.761 -1.244 22.977 hybrid contribution 1.675 1.280 -0.157 2.114 sum -5.594 -20.481 -1.401 21.277 Atomic orbital electron populations 1.21795 0.95597 1.01949 1.01792 1.21476 0.95732 0.95470 1.02723 1.22204 0.93398 0.98776 1.03496 1.21340 0.93509 0.89291 0.86518 1.21871 1.01825 1.00896 0.95609 1.86501 1.77393 1.57223 1.15781 1.22111 0.80044 0.98660 1.02154 1.45538 1.06984 1.08301 1.75239 1.18521 0.87784 0.83914 0.76515 1.90781 1.70008 1.32448 1.50590 1.19493 0.92179 0.93585 1.14224 1.21414 0.95203 0.95545 0.95261 1.21320 0.93608 0.98805 1.04262 1.21538 1.01006 0.91499 0.94970 1.21458 0.92689 1.00110 1.05747 1.22996 0.97954 0.99026 0.99091 1.84912 1.10024 0.93501 1.79341 1.24279 0.98541 0.95335 1.56601 0.88807 1.26159 0.99657 0.99260 0.93149 1.70138 1.22746 1.14747 1.46410 0.84979 0.77694 0.77462 0.78331 1.18069 1.19451 1.19588 0.92212 0.92788 0.92867 0.91634 0.91275 0.90699 0.90996 0.90605 0.90076 0.92112 0.76258 0.91879 0.92311 0.74960 0.82654 0.81696 0.83219 0.86314 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.40 5.34 30.60 0.16 -1.24 16 3 C -0.14 -1.92 4.48 30.60 0.14 -1.78 16 4 C 0.13 2.18 0.74 -10.79 -0.01 2.17 16 5 C -0.14 -2.15 8.18 71.98 0.59 -1.56 16 6 O -0.56 -8.90 12.26 -148.98 -1.83 -10.73 16 7 C 0.09 2.26 4.78 86.38 0.41 2.67 16 8 N -0.71 -19.41 5.10 -466.38 -2.38 -21.79 16 9 C 0.54 21.53 7.75 86.66 0.67 22.20 16 10 O -0.56 -27.84 13.77 -4.04 -0.06 -27.90 16 11 C -0.18 -7.14 5.89 -19.95 -0.12 -7.26 16 12 C -0.05 -1.52 9.53 22.52 0.21 -1.31 16 13 C -0.16 -3.97 10.02 22.27 0.22 -3.74 16 14 C -0.07 -2.12 10.03 22.29 0.22 -1.89 16 15 C -0.17 -7.37 9.22 22.40 0.21 -7.16 16 16 C -0.07 -3.46 6.15 23.04 0.14 -3.31 16 17 S 0.06 3.71 18.56 -56.49 -1.05 2.66 16 18 C -0.60 -35.45 9.00 67.96 0.61 -34.83 16 19 H 0.09 5.23 4.98 -2.91 -0.01 5.22 16 20 C 0.02 1.34 5.49 84.87 0.47 1.81 16 21 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 22 Si 0.99 44.28 29.55 68.60 2.03 46.31 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.84 7.82 -2.39 -0.02 0.82 16 30 H 0.07 0.79 6.35 -2.39 -0.02 0.78 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.08 1.03 6.35 -2.39 -0.02 1.01 16 35 H 0.06 0.93 6.86 -2.39 -0.02 0.91 16 36 H 0.39 4.46 9.04 -74.06 -0.67 3.79 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 8.91 5.22 -92.71 -0.48 8.42 16 40 H 0.16 2.97 6.40 -2.91 -0.02 2.95 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.12 5.41 5.04 -2.91 -0.01 5.40 16 44 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -78.52 367.92 1.53 -76.99 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.12 Total: 26.26 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 4.65 Total: -36.24 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.09 Total: -77.35 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.88 Total: -38.63 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.05 Total: 2.66 kcal Total: -78.52 1.53 -76.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231687513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.867 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds