Wall clock time and date at job start Tue Mar 31 2020 14:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46976 * 2 1 4 4 C 1.53001 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46830 * 60.00294 * 4 3 2 6 6 O 1.42900 * 109.46931 * 300.00062 * 4 3 2 7 7 C 1.52997 * 109.47297 * 179.97438 * 4 3 2 8 8 N 1.46497 * 109.47467 * 184.99801 * 7 4 3 9 9 C 1.34769 * 120.00489 * 179.97438 * 8 7 4 10 10 O 1.21609 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.47428 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.21524 * 359.96351 * 11 9 8 13 13 C 1.37807 * 119.94090 * 179.97438 * 12 11 9 14 14 C 1.38658 * 120.38211 * 0.02762 * 13 12 11 15 15 C 1.37909 * 120.43495 * 0.02562 * 14 13 12 16 16 C 1.39115 * 120.05286 * 359.96160 * 15 14 13 17 17 S 1.76200 * 120.18984 * 180.02562 * 16 15 14 18 18 C 1.76204 * 99.99758 * 6.84001 * 17 16 15 19 19 H 1.08002 * 120.00676 * 5.64968 * 18 17 16 20 20 C 1.38808 * 119.99589 * 185.65561 * 18 17 16 21 21 N 1.31559 * 120.00103 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00115 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47181 * 90.00235 * 22 20 18 24 24 H 1.48503 * 109.47208 * 209.99645 * 22 20 18 25 25 H 1.48493 * 109.47078 * 329.99930 * 22 20 18 26 26 H 1.09005 * 109.47418 * 299.99973 * 1 2 3 27 27 H 1.09003 * 109.47425 * 59.99846 * 1 2 3 28 28 H 1.09007 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47082 * 240.00218 * 2 1 3 30 30 H 1.08999 * 109.47026 * 119.99848 * 2 1 3 31 31 H 1.09006 * 109.47547 * 59.99817 * 3 2 1 32 32 H 1.09003 * 109.47169 * 300.00310 * 3 2 1 33 33 H 1.09001 * 109.46965 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47003 * 299.99912 * 5 4 3 35 35 H 1.08999 * 109.47741 * 60.00187 * 5 4 3 36 36 H 0.96696 * 114.00031 * 299.99524 * 6 4 3 37 37 H 1.09008 * 109.46994 * 65.00075 * 7 4 3 38 38 H 1.09002 * 109.47404 * 305.00267 * 7 4 3 39 39 H 0.97006 * 119.99907 * 0.02562 * 8 7 4 40 40 H 1.08005 * 120.02970 * 0.04053 * 12 11 9 41 41 H 1.08004 * 119.80645 * 180.29578 * 13 12 11 42 42 H 1.07994 * 119.77880 * 179.97438 * 14 13 12 43 43 H 1.07999 * 119.96976 * 179.97438 * 15 14 13 44 44 H 0.96998 * 120.00285 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0793 0.7216 -1.2502 6 8 4.0467 0.7688 1.1658 7 6 4.0799 2.8851 -0.0013 8 7 5.5398 2.8869 -0.1222 9 6 6.2127 4.0543 -0.1448 10 8 5.6081 5.1064 -0.0644 11 6 7.6820 4.0561 -0.2660 12 6 8.3813 2.8505 -0.3569 13 6 9.7547 2.8588 -0.4705 14 6 10.4491 4.0587 -0.4947 15 6 9.7746 5.2581 -0.4049 16 6 8.3882 5.2709 -0.2899 17 16 7.5227 6.8014 -0.1756 18 6 8.8493 7.9252 -0.4614 19 1 9.8268 7.5506 -0.7274 20 6 8.6382 9.2922 -0.3446 21 7 9.6288 10.1313 -0.5575 22 14 6.9476 9.9403 0.1148 23 1 6.8440 10.0494 1.5922 24 1 6.7481 11.2793 -0.4955 25 1 5.9068 9.0075 -0.3869 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9563 -0.8900 33 1 5.1694 0.7213 -1.2505 34 1 3.7161 -0.3061 -1.2503 35 1 3.7157 1.2355 -2.1400 36 1 3.7618 1.1722 1.9971 37 1 3.7919 3.3727 0.9301 38 1 3.6449 3.4239 -0.8431 39 1 6.0222 2.0478 -0.1868 40 1 7.8461 1.9125 -0.3392 41 1 10.2928 1.9253 -0.5454 42 1 11.5254 4.0538 -0.5836 43 1 10.3230 6.1883 -0.4241 44 1 9.4815 11.0865 -0.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231687517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:24 Heat of formation + Delta-G solvation = -74.357581 kcal Electronic energy + Delta-G solvation = -24742.885776 eV Core-core repulsion = 21171.893916 eV Total energy + Delta-G solvation = -3570.991860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.95782 -38.79782 -37.43095 -34.54448 -34.24770 -32.70687 -31.53503 -30.38761 -30.37090 -27.38073 -26.42608 -25.90064 -23.26813 -22.11225 -21.70495 -20.57461 -20.12088 -18.43921 -17.31629 -16.75504 -15.99899 -15.97519 -15.41375 -15.27266 -15.12568 -14.79258 -14.35289 -14.19631 -13.90254 -13.77510 -13.60260 -13.14159 -12.84772 -12.65600 -12.57468 -12.34169 -12.10371 -12.05038 -11.88718 -11.86538 -11.52635 -11.31730 -11.18573 -10.99284 -10.90407 -10.76950 -10.50205 -10.20134 -9.77771 -9.68509 -9.45399 -8.88290 -8.83123 -8.40731 -8.22072 -6.79466 -6.47658 -4.18658 1.42830 1.92667 2.87067 3.20419 3.34275 3.36680 3.41740 3.48266 3.98411 4.15273 4.33358 4.40062 4.50145 4.54421 4.65372 4.80944 4.88519 4.95392 5.11518 5.22948 5.27315 5.28681 5.41089 5.45567 5.51791 5.53532 5.63221 5.66701 5.69426 5.74757 5.81321 5.90633 6.01170 6.04419 6.07166 6.27434 6.51014 6.64160 6.76723 6.96652 7.06717 7.37539 7.46411 7.75729 7.81334 8.34875 8.66787 8.96522 10.59601 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.003288 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.850086 B = 8512.482755 C =10099.306595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.143 4.143 4 C 0.121 3.879 5 C -0.142 4.142 6 O -0.555 6.555 7 C 0.098 3.902 8 N -0.730 5.730 9 C 0.553 3.447 10 O -0.515 6.515 11 C -0.172 4.172 12 C -0.065 4.065 13 C -0.177 4.177 14 C -0.077 4.077 15 C -0.145 4.145 16 C -0.030 4.030 17 S 0.084 5.916 18 C -0.579 4.579 19 H 0.106 0.894 20 C 0.103 3.897 21 N -0.863 5.863 22 Si 0.850 3.150 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.234 1.234 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.377 0.623 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.399 0.601 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.204 -20.419 0.892 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.181 4.181 4 C 0.080 3.920 5 C -0.199 4.199 6 O -0.361 6.361 7 C -0.026 4.026 8 N -0.385 5.385 9 C 0.342 3.658 10 O -0.392 6.392 11 C -0.186 4.186 12 C -0.085 4.085 13 C -0.201 4.201 14 C -0.098 4.098 15 C -0.169 4.169 16 C -0.149 4.149 17 S 0.345 5.655 18 C -0.725 4.725 19 H 0.123 0.877 20 C -0.108 4.108 21 N -0.497 5.497 22 Si 0.674 3.326 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.158 1.158 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.225 0.775 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.164 0.836 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.603 -19.212 0.712 23.551 hybrid contribution 0.843 0.230 0.330 0.933 sum -12.761 -18.982 1.041 22.896 Atomic orbital electron populations 1.21798 0.96018 1.01552 1.01765 1.21486 0.95358 0.96172 1.02770 1.22225 0.94532 0.98122 1.03269 1.21463 0.92801 0.90564 0.87203 1.21806 1.01959 1.01048 0.95101 1.86536 1.77157 1.56762 1.15646 1.21928 0.81622 0.96311 1.02768 1.45772 1.06607 1.08879 1.77289 1.18305 0.87416 0.83365 0.76712 1.90758 1.69263 1.30436 1.48786 1.19165 0.91752 0.93051 1.14639 1.20910 0.94484 0.95555 0.97526 1.20729 0.93910 0.97588 1.07833 1.21143 0.99292 0.92399 0.97002 1.21576 0.93269 0.99363 1.02738 1.22523 0.96671 0.98384 0.97330 1.84113 1.11505 0.92157 1.77693 1.23532 1.00342 0.94068 1.54579 0.87668 1.24806 0.97361 0.95783 0.92853 1.69910 1.31516 1.03419 1.44829 0.86869 0.84760 0.80523 0.80460 1.18769 1.19398 1.15815 0.92837 0.92806 0.92806 0.91683 0.91330 0.91331 0.90680 0.91825 0.91298 0.90840 0.77487 0.91460 0.90821 0.76432 0.86962 0.86757 0.86597 0.83620 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.79 5.44 -26.73 -0.15 -0.94 16 3 C -0.14 -1.01 4.45 -26.73 -0.12 -1.13 16 4 C 0.12 1.01 0.75 -90.62 -0.07 0.94 16 5 C -0.14 -1.15 8.26 37.16 0.31 -0.84 16 6 O -0.55 -4.80 12.25 -35.23 -0.43 -5.23 16 7 C 0.10 1.12 4.82 -4.04 -0.02 1.10 16 8 N -0.73 -9.88 5.14 -61.38 -0.32 -10.20 16 9 C 0.55 10.26 7.75 -12.52 -0.10 10.17 16 10 O -0.51 -11.43 13.77 5.27 0.07 -11.36 16 11 C -0.17 -3.30 5.89 -104.75 -0.62 -3.92 16 12 C -0.06 -1.00 9.53 -39.20 -0.37 -1.37 16 13 C -0.18 -2.66 10.02 -39.58 -0.40 -3.06 16 14 C -0.08 -1.30 10.03 -39.55 -0.40 -1.70 16 15 C -0.14 -3.04 9.22 -39.38 -0.36 -3.41 16 16 C -0.03 -0.68 6.14 -38.39 -0.24 -0.91 16 17 S 0.08 2.17 16.53 -107.50 -1.78 0.39 16 18 C -0.58 -16.35 9.54 30.94 0.30 -16.06 16 19 H 0.11 3.06 5.21 -52.49 -0.27 2.79 16 20 C 0.10 2.92 5.50 -17.46 -0.10 2.83 16 21 N -0.86 -25.26 13.96 55.49 0.77 -24.48 16 22 Si 0.85 21.00 27.74 -169.99 -4.71 16.29 16 23 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.23 -5.80 6.74 56.52 0.38 -5.42 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 30 H 0.07 0.49 7.68 -51.93 -0.40 0.09 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 34 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.38 2.34 9.05 45.56 0.41 2.75 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 4.62 5.02 -40.82 -0.20 4.42 16 40 H 0.11 1.33 6.40 -52.48 -0.34 1.00 16 41 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.15 3.33 5.03 -52.49 -0.26 3.07 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -32.43 365.00 -8.31 -40.74 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.46 Total: 7.22 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.96 Total: -18.87 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.46 Total: -34.68 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.36 Total: -16.59 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.29 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.78 Total: 0.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.43 -8.31 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231687517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.621 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds