Wall clock time and date at job start Tue Mar 31 2020 14:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46976 * 2 1 4 4 C 1.53001 * 109.47297 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46830 * 60.00294 * 4 3 2 6 6 O 1.42900 * 109.46931 * 300.00062 * 4 3 2 7 7 C 1.52997 * 109.47297 * 179.97438 * 4 3 2 8 8 N 1.46497 * 109.47467 * 184.99801 * 7 4 3 9 9 C 1.34769 * 120.00489 * 179.97438 * 8 7 4 10 10 O 1.21609 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.47428 * 120.00317 * 179.97438 * 9 8 7 12 12 C 1.39674 * 120.21524 * 359.96351 * 11 9 8 13 13 C 1.37807 * 119.94090 * 179.97438 * 12 11 9 14 14 C 1.38658 * 120.38211 * 0.02762 * 13 12 11 15 15 C 1.37909 * 120.43495 * 0.02562 * 14 13 12 16 16 C 1.39115 * 120.05286 * 359.96160 * 15 14 13 17 17 S 1.76200 * 120.18984 * 180.02562 * 16 15 14 18 18 C 1.76204 * 99.99758 * 6.84001 * 17 16 15 19 19 H 1.08002 * 120.00676 * 5.64968 * 18 17 16 20 20 C 1.38808 * 119.99589 * 185.65561 * 18 17 16 21 21 N 1.31559 * 120.00103 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00115 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47181 * 90.00235 * 22 20 18 24 24 H 1.48503 * 109.47208 * 209.99645 * 22 20 18 25 25 H 1.48493 * 109.47078 * 329.99930 * 22 20 18 26 26 H 1.09005 * 109.47418 * 299.99973 * 1 2 3 27 27 H 1.09003 * 109.47425 * 59.99846 * 1 2 3 28 28 H 1.09007 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47082 * 240.00218 * 2 1 3 30 30 H 1.08999 * 109.47026 * 119.99848 * 2 1 3 31 31 H 1.09006 * 109.47547 * 59.99817 * 3 2 1 32 32 H 1.09003 * 109.47169 * 300.00310 * 3 2 1 33 33 H 1.09001 * 109.46965 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47003 * 299.99912 * 5 4 3 35 35 H 1.08999 * 109.47741 * 60.00187 * 5 4 3 36 36 H 0.96696 * 114.00031 * 299.99524 * 6 4 3 37 37 H 1.09008 * 109.46994 * 65.00075 * 7 4 3 38 38 H 1.09002 * 109.47404 * 305.00267 * 7 4 3 39 39 H 0.97006 * 119.99907 * 0.02562 * 8 7 4 40 40 H 1.08005 * 120.02970 * 0.04053 * 12 11 9 41 41 H 1.08004 * 119.80645 * 180.29578 * 13 12 11 42 42 H 1.07994 * 119.77880 * 179.97438 * 14 13 12 43 43 H 1.07999 * 119.96976 * 179.97438 * 15 14 13 44 44 H 0.96998 * 120.00285 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0793 0.7216 -1.2502 6 8 4.0467 0.7688 1.1658 7 6 4.0799 2.8851 -0.0013 8 7 5.5398 2.8869 -0.1222 9 6 6.2127 4.0543 -0.1448 10 8 5.6081 5.1064 -0.0644 11 6 7.6820 4.0561 -0.2660 12 6 8.3813 2.8505 -0.3569 13 6 9.7547 2.8588 -0.4705 14 6 10.4491 4.0587 -0.4947 15 6 9.7746 5.2581 -0.4049 16 6 8.3882 5.2709 -0.2899 17 16 7.5227 6.8014 -0.1756 18 6 8.8493 7.9252 -0.4614 19 1 9.8268 7.5506 -0.7274 20 6 8.6382 9.2922 -0.3446 21 7 9.6288 10.1313 -0.5575 22 14 6.9476 9.9403 0.1148 23 1 6.8440 10.0494 1.5922 24 1 6.7481 11.2793 -0.4955 25 1 5.9068 9.0075 -0.3869 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9563 -0.8900 33 1 5.1694 0.7213 -1.2505 34 1 3.7161 -0.3061 -1.2503 35 1 3.7157 1.2355 -2.1400 36 1 3.7618 1.1722 1.9971 37 1 3.7919 3.3727 0.9301 38 1 3.6449 3.4239 -0.8431 39 1 6.0222 2.0478 -0.1868 40 1 7.8461 1.9125 -0.3392 41 1 10.2928 1.9253 -0.5454 42 1 11.5254 4.0538 -0.5836 43 1 10.3230 6.1883 -0.4241 44 1 9.4815 11.0865 -0.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231687517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:23 Heat of formation + Delta-G solvation = -97.333071 kcal Electronic energy + Delta-G solvation = -24743.882068 eV Core-core repulsion = 21171.893916 eV Total energy + Delta-G solvation = -3571.988152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20911 -39.78428 -38.83242 -35.51371 -35.03342 -34.82165 -32.63234 -31.86430 -31.48041 -28.10143 -27.98470 -27.27303 -24.58396 -23.50082 -22.50482 -21.63298 -21.15931 -20.09001 -18.87733 -17.66319 -17.55540 -17.15280 -16.77205 -16.59035 -16.09103 -15.99399 -15.59910 -15.27802 -15.20687 -15.16474 -14.91862 -14.29059 -14.03872 -13.89000 -13.67639 -13.39624 -13.26072 -13.12423 -13.05906 -12.89475 -12.64430 -12.62048 -12.49740 -12.27386 -12.09302 -11.58519 -11.55858 -11.45225 -11.34681 -11.32983 -10.82179 -10.59401 -10.17490 -10.05985 -9.81321 -8.67864 -8.59908 -6.31134 -0.04396 0.45658 0.99847 1.22724 1.39930 1.62664 1.96386 2.14069 2.17719 2.66707 2.77286 2.96876 3.32905 3.59235 3.82865 3.89235 3.91711 3.96123 4.22518 4.23798 4.34037 4.54580 4.57213 4.58104 4.63018 4.70880 4.78734 4.85831 4.88929 4.99575 5.01604 5.05490 5.09570 5.20839 5.31524 5.34207 5.45667 5.47234 5.48038 5.52681 5.60293 5.66153 6.03765 6.16025 6.57373 6.81959 6.83839 7.29714 8.51305 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.003288 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.850086 B = 8512.482755 C =10099.306595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.141 4.141 4 C 0.134 3.866 5 C -0.146 4.146 6 O -0.562 6.562 7 C 0.094 3.906 8 N -0.705 5.705 9 C 0.547 3.453 10 O -0.557 6.557 11 C -0.173 4.173 12 C -0.055 4.055 13 C -0.147 4.147 14 C -0.071 4.071 15 C -0.170 4.170 16 C -0.055 4.055 17 S 0.024 5.976 18 C -0.586 4.586 19 H 0.080 0.920 20 C 0.053 3.947 21 N -0.907 5.907 22 Si 0.907 3.093 23 H -0.258 1.258 24 H -0.252 1.252 25 H -0.240 1.240 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.388 0.612 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.412 0.588 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -24.937 1.011 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.179 4.179 4 C 0.093 3.907 5 C -0.203 4.203 6 O -0.369 6.369 7 C -0.030 4.030 8 N -0.359 5.359 9 C 0.336 3.664 10 O -0.437 6.437 11 C -0.186 4.186 12 C -0.075 4.075 13 C -0.169 4.169 14 C -0.092 4.092 15 C -0.195 4.195 16 C -0.172 4.172 17 S 0.279 5.721 18 C -0.732 4.732 19 H 0.097 0.903 20 C -0.154 4.154 21 N -0.543 5.543 22 Si 0.728 3.272 23 H -0.182 1.182 24 H -0.176 1.176 25 H -0.164 1.164 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.251 0.749 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.165 0.835 43 H 0.131 0.869 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.352 -23.852 0.834 27.849 hybrid contribution 1.172 1.163 0.285 1.675 sum -13.180 -22.689 1.119 26.263 Atomic orbital electron populations 1.21797 0.95642 1.01906 1.01808 1.21445 0.95654 0.95551 1.02695 1.22203 0.93428 0.98681 1.03568 1.21337 0.93482 0.88341 0.87577 1.21864 1.01865 1.01664 0.94897 1.86514 1.77371 1.56835 1.16223 1.22141 0.79976 0.98645 1.02210 1.45586 1.07605 1.07793 1.74956 1.18401 0.87409 0.84065 0.76518 1.90741 1.69830 1.32297 1.50871 1.19533 0.92551 0.93237 1.13294 1.21450 0.95086 0.95699 0.95233 1.21382 0.93807 0.98650 1.03097 1.21542 1.01040 0.91483 0.95134 1.21469 0.92970 1.00077 1.04937 1.22529 0.97267 0.97563 0.99854 1.84004 1.11644 0.94461 1.81990 1.23651 1.00193 0.95056 1.54300 0.90265 1.25592 1.00718 0.96020 0.93030 1.69987 1.33375 1.03870 1.47109 0.86015 0.80531 0.80227 0.80386 1.18218 1.17623 1.16429 0.92840 0.92760 0.92327 0.91471 0.91630 0.90989 0.90576 0.91967 0.90273 0.90520 0.76244 0.91985 0.91580 0.74872 0.82143 0.81361 0.83463 0.86920 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.24 5.44 30.59 0.17 -1.07 16 3 C -0.14 -1.65 4.45 30.59 0.14 -1.52 16 4 C 0.13 1.88 0.75 -10.80 -0.01 1.87 16 5 C -0.15 -1.88 8.26 71.98 0.59 -1.29 16 6 O -0.56 -7.88 12.25 -148.98 -1.83 -9.71 16 7 C 0.09 1.97 4.82 86.38 0.42 2.39 16 8 N -0.70 -17.29 5.14 -466.37 -2.40 -19.69 16 9 C 0.55 19.78 7.75 86.67 0.67 20.45 16 10 O -0.56 -25.19 13.77 -4.06 -0.06 -25.25 16 11 C -0.17 -6.39 5.89 -19.95 -0.12 -6.50 16 12 C -0.05 -1.42 9.53 22.51 0.21 -1.21 16 13 C -0.15 -3.56 10.02 22.27 0.22 -3.34 16 14 C -0.07 -2.21 10.03 22.29 0.22 -1.99 16 15 C -0.17 -7.28 9.22 22.40 0.21 -7.08 16 16 C -0.06 -2.53 6.14 23.04 0.14 -2.39 16 17 S 0.02 1.27 16.53 -56.49 -0.93 0.34 16 18 C -0.59 -35.44 9.54 67.96 0.65 -34.79 16 19 H 0.08 5.04 5.21 -2.91 -0.02 5.02 16 20 C 0.05 3.17 5.50 84.87 0.47 3.64 16 21 N -0.91 -55.95 13.96 21.65 0.30 -55.65 16 22 Si 0.91 45.56 27.74 68.60 1.90 47.46 16 23 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.25 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.24 -12.19 6.74 99.48 0.67 -11.52 16 26 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.07 0.70 6.43 -2.39 -0.02 0.68 16 30 H 0.06 0.75 7.68 -2.39 -0.02 0.74 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.81 6.57 -2.39 -0.02 0.79 16 34 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.39 3.69 9.05 -74.06 -0.67 3.02 16 37 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.41 7.79 5.02 -92.70 -0.47 7.32 16 40 H 0.16 2.66 6.40 -2.91 -0.02 2.65 16 41 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.11 5.58 5.03 -2.91 -0.01 5.56 16 44 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -77.25 365.00 1.55 -75.69 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.14 Total: 20.44 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 4.70 Total: -33.63 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -2.09 Total: -75.34 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.88 Total: -34.96 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -0.93 Total: 0.34 kcal Total: -77.25 1.55 -75.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231687517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.641 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds